Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04300 and HMPREF1058_RS04295 are separated by 107 nucleotides HMPREF1058_RS04295 and HMPREF1058_RS04290 are separated by 108 nucleotides
HMPREF1058_RS04300: HMPREF1058_RS04300 - 3-phosphoserine/phosphohydroxythreonine transaminase, at 70,933 to 72,003
_RS04300
HMPREF1058_RS04295: HMPREF1058_RS04295 - 3-phosphoglycerate dehydrogenase, at 72,111 to 73,031
_RS04295
HMPREF1058_RS04290: HMPREF1058_RS04290 - DUF1015 domain-containing protein, at 73,140 to 74,387
_RS04290
Position (kb) 72
73
74 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 71.138 kb on + strand, within HMPREF1058_RS04300 at 71.172 kb on + strand, within HMPREF1058_RS04300 at 71.173 kb on - strand, within HMPREF1058_RS04300 at 71.177 kb on + strand, within HMPREF1058_RS04300 at 71.177 kb on + strand, within HMPREF1058_RS04300 at 71.178 kb on - strand, within HMPREF1058_RS04300 at 71.302 kb on + strand, within HMPREF1058_RS04300 at 71.302 kb on + strand, within HMPREF1058_RS04300 at 71.303 kb on - strand, within HMPREF1058_RS04300 at 71.305 kb on - strand, within HMPREF1058_RS04300 at 71.430 kb on + strand, within HMPREF1058_RS04300 at 71.475 kb on + strand, within HMPREF1058_RS04300 at 71.481 kb on + strand at 71.676 kb on - strand, within HMPREF1058_RS04300 at 71.737 kb on + strand, within HMPREF1058_RS04300 at 71.834 kb on - strand, within HMPREF1058_RS04300 at 71.880 kb on + strand, within HMPREF1058_RS04300 at 71.940 kb on + strand at 72.004 kb on + strand at 72.005 kb on - strand at 72.008 kb on + strand at 72.158 kb on - strand at 72.158 kb on - strand at 72.217 kb on - strand, within HMPREF1058_RS04295 at 72.235 kb on + strand, within HMPREF1058_RS04295 at 72.236 kb on - strand, within HMPREF1058_RS04295 at 72.281 kb on + strand, within HMPREF1058_RS04295 at 72.331 kb on + strand, within HMPREF1058_RS04295 at 72.332 kb on - strand, within HMPREF1058_RS04295 at 72.581 kb on + strand, within HMPREF1058_RS04295 at 72.664 kb on - strand at 72.678 kb on - strand, within HMPREF1058_RS04295 at 72.729 kb on + strand, within HMPREF1058_RS04295 at 72.763 kb on + strand, within HMPREF1058_RS04295 at 72.838 kb on + strand, within HMPREF1058_RS04295 at 72.844 kb on - strand, within HMPREF1058_RS04295 at 72.844 kb on - strand, within HMPREF1058_RS04295 at 73.025 kb on + strand at 73.026 kb on - strand at 73.034 kb on - strand at 73.077 kb on - strand at 73.078 kb on + strand at 73.078 kb on + strand at 73.078 kb on + strand at 73.079 kb on - strand at 73.084 kb on - strand at 73.147 kb on + strand at 73.151 kb on - strand at 73.272 kb on + strand, within HMPREF1058_RS04290 at 73.272 kb on + strand, within HMPREF1058_RS04290 at 73.328 kb on + strand, within HMPREF1058_RS04290 at 73.329 kb on - strand, within HMPREF1058_RS04290 at 73.333 kb on + strand, within HMPREF1058_RS04290 at 73.333 kb on + strand, within HMPREF1058_RS04290 at 73.336 kb on - strand, within HMPREF1058_RS04290 at 73.408 kb on - strand, within HMPREF1058_RS04290 at 73.411 kb on - strand, within HMPREF1058_RS04290 at 73.415 kb on - strand, within HMPREF1058_RS04290 at 73.632 kb on - strand, within HMPREF1058_RS04290 at 73.715 kb on + strand, within HMPREF1058_RS04290 at 73.717 kb on + strand, within HMPREF1058_RS04290 at 73.852 kb on - strand, within HMPREF1058_RS04290 at 73.857 kb on + strand, within HMPREF1058_RS04290 at 73.857 kb on + strand, within HMPREF1058_RS04290 at 73.906 kb on - strand, within HMPREF1058_RS04290 at 74.004 kb on + strand, within HMPREF1058_RS04290
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 71,138 + HMPREF1058_RS04300 0.19 -4.4 71,172 + HMPREF1058_RS04300 0.22 -1.2 71,173 - HMPREF1058_RS04300 0.22 -1.8 71,177 + HMPREF1058_RS04300 0.23 -1.8 71,177 + HMPREF1058_RS04300 0.23 -0.3 71,178 - HMPREF1058_RS04300 0.23 -0.7 71,302 + HMPREF1058_RS04300 0.34 -2.7 71,302 + HMPREF1058_RS04300 0.34 -3.7 71,303 - HMPREF1058_RS04300 0.35 +0.7 71,305 - HMPREF1058_RS04300 0.35 -2.6 71,430 + HMPREF1058_RS04300 0.46 +0.1 71,475 + HMPREF1058_RS04300 0.51 -1.3 71,481 + +0.1 71,676 - HMPREF1058_RS04300 0.69 -0.3 71,737 + HMPREF1058_RS04300 0.75 -3.9 71,834 - HMPREF1058_RS04300 0.84 -0.3 71,880 + HMPREF1058_RS04300 0.88 -0.9 71,940 + -0.9 72,004 + -2.0 72,005 - -2.4 72,008 + -1.1 72,158 - +0.7 72,158 - -0.7 72,217 - HMPREF1058_RS04295 0.12 -0.9 72,235 + HMPREF1058_RS04295 0.13 -3.5 72,236 - HMPREF1058_RS04295 0.14 -5.0 72,281 + HMPREF1058_RS04295 0.18 +0.1 72,331 + HMPREF1058_RS04295 0.24 -2.9 72,332 - HMPREF1058_RS04295 0.24 -1.9 72,581 + HMPREF1058_RS04295 0.51 -3.8 72,664 - -0.7 72,678 - HMPREF1058_RS04295 0.62 -3.6 72,729 + HMPREF1058_RS04295 0.67 -2.7 72,763 + HMPREF1058_RS04295 0.71 -2.6 72,838 + HMPREF1058_RS04295 0.79 -1.3 72,844 - HMPREF1058_RS04295 0.80 -1.9 72,844 - HMPREF1058_RS04295 0.80 -0.7 73,025 + +0.9 73,026 - -1.5 73,034 - -0.3 73,077 - +0.9 73,078 + +0.0 73,078 + +2.7 73,078 + +0.5 73,079 - +0.7 73,084 - -0.5 73,147 + +1.1 73,151 - +1.1 73,272 + HMPREF1058_RS04290 0.11 -0.5 73,272 + HMPREF1058_RS04290 0.11 +0.0 73,328 + HMPREF1058_RS04290 0.15 +0.5 73,329 - HMPREF1058_RS04290 0.15 +0.3 73,333 + HMPREF1058_RS04290 0.15 +0.3 73,333 + HMPREF1058_RS04290 0.15 +1.3 73,336 - HMPREF1058_RS04290 0.16 +1.7 73,408 - HMPREF1058_RS04290 0.21 +0.5 73,411 - HMPREF1058_RS04290 0.22 -0.3 73,415 - HMPREF1058_RS04290 0.22 +0.3 73,632 - HMPREF1058_RS04290 0.39 -0.7 73,715 + HMPREF1058_RS04290 0.46 +0.4 73,717 + HMPREF1058_RS04290 0.46 -0.6 73,852 - HMPREF1058_RS04290 0.57 +0.3 73,857 + HMPREF1058_RS04290 0.57 +1.0 73,857 + HMPREF1058_RS04290 0.57 +0.4 73,906 - HMPREF1058_RS04290 0.61 +1.0 74,004 + HMPREF1058_RS04290 0.69 +1.1
Or see this region's nucleotide sequence