Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS03970

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
147,524	+				+0.9
148,192	-		HMPREF1058_RS03975	0.69	-1.8
148,218	-				-0.9
148,477	-				-1.3
148,606	-		HMPREF1058_RS03970	0.19	-2.3
148,606	-		HMPREF1058_RS03970	0.19	-1.7
148,624	+		HMPREF1058_RS03970	0.21	-1.7
148,629	-		HMPREF1058_RS03970	0.22	-1.5
148,666	+		HMPREF1058_RS03970	0.26	-1.4
148,666	+				+0.1
148,667	-		HMPREF1058_RS03970	0.26	-2.2
148,688	+		HMPREF1058_RS03970	0.29	-0.7
148,753	+				-0.7
148,753	+		HMPREF1058_RS03970	0.37	+0.1
149,093	+				-1.3
149,279	-				+0.7
149,299	+				-0.0
149,320	-				-0.1
149,797	-				-3.4
149,919	+				-2.1