Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03515 and HMPREF1058_RS03510 are separated by 33 nucleotides HMPREF1058_RS03510 and HMPREF1058_RS03505 are separated by 1 nucleotides HMPREF1058_RS03505 and HMPREF1058_RS03500 are separated by 115 nucleotides
HMPREF1058_RS03515: HMPREF1058_RS03515 - phenylalanine--tRNA ligase subunit beta, at 262,781 to 265,243
_RS03515
HMPREF1058_RS03510: HMPREF1058_RS03510 - YebC/PmpR family DNA-binding transcriptional regulator, at 265,277 to 266,017
_RS03510
HMPREF1058_RS03505: HMPREF1058_RS03505 - TIGR03905 family TSCPD domain-containing protein, at 266,019 to 266,264
_RS03505
HMPREF1058_RS03500: HMPREF1058_RS03500 - DEAD/DEAH box helicase, at 266,380 to 268,743
_RS03500
Position (kb) 265
266
267 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 265.241 kb on + strand at 265.241 kb on + strand at 265.241 kb on + strand at 265.262 kb on + strand at 265.262 kb on + strand at 265.269 kb on - strand at 265.297 kb on + strand at 265.371 kb on + strand, within HMPREF1058_RS03510 at 265.372 kb on - strand, within HMPREF1058_RS03510 at 265.432 kb on + strand, within HMPREF1058_RS03510 at 265.433 kb on - strand, within HMPREF1058_RS03510 at 265.438 kb on + strand, within HMPREF1058_RS03510 at 265.438 kb on + strand, within HMPREF1058_RS03510 at 265.527 kb on - strand, within HMPREF1058_RS03510 at 265.558 kb on - strand, within HMPREF1058_RS03510 at 265.643 kb on - strand, within HMPREF1058_RS03510 at 265.676 kb on - strand, within HMPREF1058_RS03510 at 265.747 kb on + strand, within HMPREF1058_RS03510 at 265.748 kb on - strand, within HMPREF1058_RS03510 at 265.753 kb on - strand, within HMPREF1058_RS03510 at 265.790 kb on - strand, within HMPREF1058_RS03510 at 265.800 kb on - strand, within HMPREF1058_RS03510 at 265.817 kb on + strand, within HMPREF1058_RS03510 at 265.880 kb on + strand, within HMPREF1058_RS03510 at 265.880 kb on + strand, within HMPREF1058_RS03510 at 265.881 kb on - strand, within HMPREF1058_RS03510 at 265.982 kb on - strand at 265.982 kb on - strand at 266.032 kb on - strand at 266.034 kb on - strand at 266.074 kb on + strand, within HMPREF1058_RS03505 at 266.128 kb on + strand, within HMPREF1058_RS03505 at 266.128 kb on + strand, within HMPREF1058_RS03505 at 266.135 kb on + strand, within HMPREF1058_RS03505 at 266.233 kb on + strand, within HMPREF1058_RS03505 at 266.233 kb on + strand, within HMPREF1058_RS03505 at 266.262 kb on + strand at 266.286 kb on + strand at 266.322 kb on - strand at 266.323 kb on + strand at 266.323 kb on + strand at 266.323 kb on + strand at 266.324 kb on - strand at 266.324 kb on - strand at 266.326 kb on + strand at 266.326 kb on + strand at 266.326 kb on + strand at 266.327 kb on - strand at 266.557 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 265,241 + -0.2 265,241 + -0.7 265,241 + +1.5 265,262 + +0.9 265,262 + +0.5 265,269 - +1.7 265,297 + -0.3 265,371 + HMPREF1058_RS03510 0.13 -2.1 265,372 - HMPREF1058_RS03510 0.13 -1.7 265,432 + HMPREF1058_RS03510 0.21 -3.1 265,433 - HMPREF1058_RS03510 0.21 +0.1 265,438 + HMPREF1058_RS03510 0.22 -0.3 265,438 + HMPREF1058_RS03510 0.22 -1.7 265,527 - HMPREF1058_RS03510 0.34 -1.3 265,558 - HMPREF1058_RS03510 0.38 -1.9 265,643 - HMPREF1058_RS03510 0.49 -2.7 265,676 - HMPREF1058_RS03510 0.54 -1.9 265,747 + HMPREF1058_RS03510 0.63 -1.9 265,748 - HMPREF1058_RS03510 0.64 -1.1 265,753 - HMPREF1058_RS03510 0.64 -2.1 265,790 - HMPREF1058_RS03510 0.69 -2.1 265,800 - HMPREF1058_RS03510 0.71 -0.9 265,817 + HMPREF1058_RS03510 0.73 -1.9 265,880 + HMPREF1058_RS03510 0.81 -1.1 265,880 + HMPREF1058_RS03510 0.81 -3.2 265,881 - HMPREF1058_RS03510 0.82 -0.9 265,982 - -2.0 265,982 - -3.3 266,032 - +0.1 266,034 - +0.7 266,074 + HMPREF1058_RS03505 0.22 +0.7 266,128 + HMPREF1058_RS03505 0.44 +0.2 266,128 + HMPREF1058_RS03505 0.44 +1.7 266,135 + HMPREF1058_RS03505 0.47 +1.1 266,233 + HMPREF1058_RS03505 0.87 +0.5 266,233 + HMPREF1058_RS03505 0.87 +0.2 266,262 + +0.8 266,286 + +1.4 266,322 - -0.2 266,323 + +0.9 266,323 + +1.7 266,323 + +0.7 266,324 - -0.3 266,324 - +0.1 266,326 + +0.9 266,326 + +1.2 266,326 + +0.6 266,327 - +0.7 266,557 - -0.1
Or see this region's nucleotide sequence