Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03295 and HMPREF1058_RS03290 overlap by 11 nucleotides HMPREF1058_RS03290 and HMPREF1058_RS03285 are separated by 17 nucleotides HMPREF1058_RS03285 and HMPREF1058_RS03280 are separated by 8 nucleotides
HMPREF1058_RS03295: HMPREF1058_RS03295 - sulfur carrier protein ThiS, at 313,624 to 313,824
_RS03295
HMPREF1058_RS03290: HMPREF1058_RS03290 - thiamine phosphate synthase, at 313,814 to 314,440
_RS03290
HMPREF1058_RS03285: HMPREF1058_RS03285 - thiazole synthase, at 314,458 to 315,231
_RS03285
HMPREF1058_RS03280: HMPREF1058_RS03280 - phosphomethylpyrimidine synthase ThiC, at 315,240 to 316,940
_RS03280
Position (kb) 314
315
316 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 313.461 kb on + strand at 313.462 kb on - strand at 313.505 kb on + strand at 313.507 kb on + strand at 313.507 kb on + strand at 313.550 kb on + strand at 313.618 kb on + strand at 313.619 kb on - strand at 313.620 kb on + strand at 313.621 kb on - strand at 313.621 kb on - strand at 313.623 kb on + strand at 313.659 kb on - strand, within HMPREF1058_RS03295 at 313.754 kb on + strand, within HMPREF1058_RS03295 at 313.865 kb on + strand at 313.866 kb on - strand at 313.866 kb on - strand at 313.866 kb on - strand at 313.871 kb on + strand at 313.875 kb on - strand at 313.924 kb on - strand, within HMPREF1058_RS03290 at 314.106 kb on + strand, within HMPREF1058_RS03290 at 314.107 kb on - strand, within HMPREF1058_RS03290 at 314.155 kb on - strand, within HMPREF1058_RS03290 at 314.183 kb on + strand, within HMPREF1058_RS03290 at 314.184 kb on - strand, within HMPREF1058_RS03290 at 314.388 kb on + strand at 314.389 kb on - strand at 314.441 kb on + strand at 314.455 kb on - strand at 314.455 kb on - strand at 314.475 kb on - strand at 314.490 kb on + strand at 314.623 kb on - strand, within HMPREF1058_RS03285 at 314.634 kb on + strand, within HMPREF1058_RS03285 at 314.651 kb on + strand, within HMPREF1058_RS03285 at 314.652 kb on - strand, within HMPREF1058_RS03285 at 314.652 kb on - strand, within HMPREF1058_RS03285 at 314.657 kb on + strand at 314.668 kb on - strand, within HMPREF1058_RS03285 at 314.829 kb on - strand, within HMPREF1058_RS03285 at 314.865 kb on + strand, within HMPREF1058_RS03285 at 314.865 kb on + strand, within HMPREF1058_RS03285 at 314.866 kb on - strand, within HMPREF1058_RS03285 at 314.866 kb on - strand, within HMPREF1058_RS03285 at 315.000 kb on - strand, within HMPREF1058_RS03285 at 315.003 kb on - strand, within HMPREF1058_RS03285 at 315.075 kb on + strand, within HMPREF1058_RS03285 at 315.117 kb on - strand, within HMPREF1058_RS03285 at 315.168 kb on - strand at 315.224 kb on + strand at 315.239 kb on + strand at 315.293 kb on + strand at 315.294 kb on - strand at 315.316 kb on - strand at 315.326 kb on - strand at 315.364 kb on + strand at 315.407 kb on + strand at 315.495 kb on - strand, within HMPREF1058_RS03280 at 315.682 kb on - strand, within HMPREF1058_RS03280 at 315.685 kb on + strand, within HMPREF1058_RS03280 at 315.763 kb on + strand, within HMPREF1058_RS03280 at 315.781 kb on + strand, within HMPREF1058_RS03280 at 315.782 kb on - strand, within HMPREF1058_RS03280 at 315.782 kb on - strand, within HMPREF1058_RS03280 at 315.818 kb on + strand, within HMPREF1058_RS03280 at 316.020 kb on - strand, within HMPREF1058_RS03280 at 316.028 kb on + strand, within HMPREF1058_RS03280 at 316.029 kb on - strand, within HMPREF1058_RS03280 at 316.032 kb on + strand, within HMPREF1058_RS03280 at 316.087 kb on - strand, within HMPREF1058_RS03280 at 316.095 kb on - strand, within HMPREF1058_RS03280 at 316.129 kb on - strand, within HMPREF1058_RS03280
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 313,461 + -0.0 313,462 - -3.2 313,505 + +0.2 313,507 + +0.7 313,507 + -0.3 313,550 + +0.8 313,618 + +0.6 313,619 - -0.6 313,620 + -3.4 313,621 - -2.6 313,621 - -0.9 313,623 + -0.9 313,659 - HMPREF1058_RS03295 0.17 -2.3 313,754 + HMPREF1058_RS03295 0.65 -3.6 313,865 + -0.9 313,866 - -1.1 313,866 - -3.0 313,866 - -1.3 313,871 + -0.6 313,875 - -1.1 313,924 - HMPREF1058_RS03290 0.18 -0.1 314,106 + HMPREF1058_RS03290 0.47 -2.7 314,107 - HMPREF1058_RS03290 0.47 -3.0 314,155 - HMPREF1058_RS03290 0.54 -2.2 314,183 + HMPREF1058_RS03290 0.59 -2.0 314,184 - HMPREF1058_RS03290 0.59 -2.0 314,388 + +0.3 314,389 - -2.7 314,441 + +1.0 314,455 - -4.0 314,455 - -1.7 314,475 - -2.0 314,490 + -1.4 314,623 - HMPREF1058_RS03285 0.21 -0.3 314,634 + HMPREF1058_RS03285 0.23 -1.9 314,651 + HMPREF1058_RS03285 0.25 -2.3 314,652 - HMPREF1058_RS03285 0.25 -2.2 314,652 - HMPREF1058_RS03285 0.25 -1.8 314,657 + +0.1 314,668 - HMPREF1058_RS03285 0.27 -2.5 314,829 - HMPREF1058_RS03285 0.48 -2.8 314,865 + HMPREF1058_RS03285 0.53 -2.4 314,865 + HMPREF1058_RS03285 0.53 -1.5 314,866 - HMPREF1058_RS03285 0.53 -3.7 314,866 - HMPREF1058_RS03285 0.53 -1.5 315,000 - HMPREF1058_RS03285 0.70 +0.3 315,003 - HMPREF1058_RS03285 0.70 -1.3 315,075 + HMPREF1058_RS03285 0.80 -0.7 315,117 - HMPREF1058_RS03285 0.85 -2.6 315,168 - -2.7 315,224 + +0.5 315,239 + +0.4 315,293 + -1.7 315,294 - -3.5 315,316 - -2.8 315,326 - -3.6 315,364 + -1.8 315,407 + -0.3 315,495 - HMPREF1058_RS03280 0.15 -3.7 315,682 - HMPREF1058_RS03280 0.26 +0.2 315,685 + HMPREF1058_RS03280 0.26 -0.1 315,763 + HMPREF1058_RS03280 0.31 -1.0 315,781 + HMPREF1058_RS03280 0.32 -3.9 315,782 - HMPREF1058_RS03280 0.32 -1.5 315,782 - HMPREF1058_RS03280 0.32 -1.6 315,818 + HMPREF1058_RS03280 0.34 -2.7 316,020 - HMPREF1058_RS03280 0.46 -0.3 316,028 + HMPREF1058_RS03280 0.46 -1.6 316,029 - HMPREF1058_RS03280 0.46 -1.4 316,032 + HMPREF1058_RS03280 0.47 -2.2 316,087 - HMPREF1058_RS03280 0.50 -1.2 316,095 - HMPREF1058_RS03280 0.50 -0.7 316,129 - HMPREF1058_RS03280 0.52 -1.8
Or see this region's nucleotide sequence