Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03275 and HMPREF1058_RS03270 overlap by 1 nucleotides HMPREF1058_RS03270 and HMPREF1058_RS03265 are separated by 85 nucleotides HMPREF1058_RS03265 and HMPREF1058_RS03260 are separated by 78 nucleotides HMPREF1058_RS03260 and HMPREF1058_RS03255 are separated by 112 nucleotides
HMPREF1058_RS03275: HMPREF1058_RS03275 - hypothetical protein, at 316,962 to 317,477
_RS03275
HMPREF1058_RS03270: HMPREF1058_RS03270 - flavodoxin family protein, at 317,477 to 318,049
_RS03270
HMPREF1058_RS03265: HMPREF1058_RS03265 - 2-iminoacetate synthase ThiH, at 318,135 to 319,265
_RS03265
HMPREF1058_RS03260: HMPREF1058_RS03260 - HesA/MoeB/ThiF family protein, at 319,344 to 320,036
_RS03260
HMPREF1058_RS03255: HMPREF1058_RS03255 - glutathionylspermidine synthase family protein, at 320,149 to 321,273
_RS03255
Position (kb) 318
319
320 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 317.350 kb on - strand, within HMPREF1058_RS03275 at 317.421 kb on + strand, within HMPREF1058_RS03275 at 317.425 kb on - strand, within HMPREF1058_RS03275 at 317.476 kb on - strand at 317.484 kb on + strand at 317.601 kb on - strand, within HMPREF1058_RS03270 at 317.694 kb on + strand, within HMPREF1058_RS03270 at 317.764 kb on - strand, within HMPREF1058_RS03270 at 317.884 kb on + strand, within HMPREF1058_RS03270 at 317.914 kb on - strand, within HMPREF1058_RS03270 at 318.033 kb on + strand at 318.084 kb on + strand at 318.094 kb on + strand at 318.095 kb on - strand at 318.119 kb on + strand at 318.367 kb on - strand, within HMPREF1058_RS03265 at 318.367 kb on - strand, within HMPREF1058_RS03265 at 318.368 kb on + strand, within HMPREF1058_RS03265 at 318.399 kb on + strand, within HMPREF1058_RS03265 at 318.434 kb on + strand, within HMPREF1058_RS03265 at 318.469 kb on - strand, within HMPREF1058_RS03265 at 318.550 kb on - strand, within HMPREF1058_RS03265 at 318.601 kb on + strand, within HMPREF1058_RS03265 at 318.607 kb on + strand, within HMPREF1058_RS03265 at 318.631 kb on - strand, within HMPREF1058_RS03265 at 318.685 kb on - strand, within HMPREF1058_RS03265 at 318.701 kb on + strand, within HMPREF1058_RS03265 at 318.702 kb on - strand, within HMPREF1058_RS03265 at 318.706 kb on + strand, within HMPREF1058_RS03265 at 318.706 kb on + strand, within HMPREF1058_RS03265 at 318.707 kb on - strand, within HMPREF1058_RS03265 at 318.707 kb on - strand, within HMPREF1058_RS03265 at 318.708 kb on + strand, within HMPREF1058_RS03265 at 318.802 kb on + strand, within HMPREF1058_RS03265 at 318.802 kb on + strand, within HMPREF1058_RS03265 at 318.856 kb on + strand, within HMPREF1058_RS03265 at 318.892 kb on - strand, within HMPREF1058_RS03265 at 318.892 kb on - strand, within HMPREF1058_RS03265 at 319.012 kb on + strand, within HMPREF1058_RS03265 at 319.016 kb on + strand, within HMPREF1058_RS03265 at 319.023 kb on + strand, within HMPREF1058_RS03265 at 319.069 kb on + strand, within HMPREF1058_RS03265 at 319.119 kb on + strand, within HMPREF1058_RS03265 at 319.119 kb on + strand, within HMPREF1058_RS03265 at 319.120 kb on - strand, within HMPREF1058_RS03265 at 319.120 kb on - strand, within HMPREF1058_RS03265 at 319.120 kb on - strand, within HMPREF1058_RS03265 at 319.121 kb on + strand, within HMPREF1058_RS03265 at 319.121 kb on + strand, within HMPREF1058_RS03265 at 319.121 kb on + strand, within HMPREF1058_RS03265 at 319.122 kb on - strand, within HMPREF1058_RS03265 at 319.167 kb on - strand at 319.259 kb on - strand at 319.263 kb on + strand at 319.298 kb on + strand at 319.300 kb on + strand at 319.300 kb on + strand at 319.301 kb on - strand at 319.424 kb on + strand, within HMPREF1058_RS03260 at 319.425 kb on - strand, within HMPREF1058_RS03260 at 319.483 kb on + strand, within HMPREF1058_RS03260 at 319.516 kb on + strand, within HMPREF1058_RS03260 at 319.621 kb on + strand, within HMPREF1058_RS03260 at 319.683 kb on + strand, within HMPREF1058_RS03260 at 319.696 kb on + strand, within HMPREF1058_RS03260 at 319.697 kb on - strand at 319.730 kb on + strand, within HMPREF1058_RS03260 at 319.731 kb on - strand, within HMPREF1058_RS03260 at 319.739 kb on + strand, within HMPREF1058_RS03260 at 319.740 kb on - strand, within HMPREF1058_RS03260 at 319.768 kb on + strand, within HMPREF1058_RS03260 at 319.768 kb on + strand, within HMPREF1058_RS03260 at 319.769 kb on - strand, within HMPREF1058_RS03260 at 319.770 kb on + strand, within HMPREF1058_RS03260 at 319.770 kb on + strand, within HMPREF1058_RS03260 at 319.898 kb on - strand, within HMPREF1058_RS03260 at 319.919 kb on - strand, within HMPREF1058_RS03260 at 319.919 kb on - strand, within HMPREF1058_RS03260 at 319.919 kb on - strand, within HMPREF1058_RS03260 at 319.919 kb on - strand, within HMPREF1058_RS03260 at 319.952 kb on + strand, within HMPREF1058_RS03260 at 319.962 kb on + strand, within HMPREF1058_RS03260 at 319.987 kb on + strand at 320.002 kb on + strand at 320.068 kb on + strand at 320.160 kb on + strand at 320.160 kb on + strand at 320.160 kb on + strand at 320.161 kb on - strand at 320.161 kb on - strand at 320.161 kb on - strand at 320.239 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 317,350 - HMPREF1058_RS03275 0.75 -1.2 317,421 + HMPREF1058_RS03275 0.89 +0.4 317,425 - HMPREF1058_RS03275 0.90 -1.3 317,476 - -1.3 317,484 + -0.2 317,601 - HMPREF1058_RS03270 0.22 -2.0 317,694 + HMPREF1058_RS03270 0.38 +0.9 317,764 - HMPREF1058_RS03270 0.50 -1.7 317,884 + HMPREF1058_RS03270 0.71 -0.7 317,914 - HMPREF1058_RS03270 0.76 -3.6 318,033 + -0.9 318,084 + +0.4 318,094 + +0.0 318,095 - -2.8 318,119 + +1.1 318,367 - HMPREF1058_RS03265 0.21 -3.0 318,367 - HMPREF1058_RS03265 0.21 -1.6 318,368 + HMPREF1058_RS03265 0.21 -3.0 318,399 + HMPREF1058_RS03265 0.23 -1.1 318,434 + HMPREF1058_RS03265 0.26 -2.5 318,469 - HMPREF1058_RS03265 0.30 -3.1 318,550 - HMPREF1058_RS03265 0.37 -0.8 318,601 + HMPREF1058_RS03265 0.41 +0.7 318,607 + HMPREF1058_RS03265 0.42 -0.0 318,631 - HMPREF1058_RS03265 0.44 -2.9 318,685 - HMPREF1058_RS03265 0.49 -2.2 318,701 + HMPREF1058_RS03265 0.50 -2.3 318,702 - HMPREF1058_RS03265 0.50 -3.2 318,706 + HMPREF1058_RS03265 0.50 -1.5 318,706 + HMPREF1058_RS03265 0.50 -3.2 318,707 - HMPREF1058_RS03265 0.51 -2.1 318,707 - HMPREF1058_RS03265 0.51 -1.7 318,708 + HMPREF1058_RS03265 0.51 -1.3 318,802 + HMPREF1058_RS03265 0.59 -3.8 318,802 + HMPREF1058_RS03265 0.59 -2.0 318,856 + HMPREF1058_RS03265 0.64 -1.5 318,892 - HMPREF1058_RS03265 0.67 -2.0 318,892 - HMPREF1058_RS03265 0.67 -1.5 319,012 + HMPREF1058_RS03265 0.78 -3.3 319,016 + HMPREF1058_RS03265 0.78 -2.7 319,023 + HMPREF1058_RS03265 0.79 -1.5 319,069 + HMPREF1058_RS03265 0.83 -2.0 319,119 + HMPREF1058_RS03265 0.87 -1.3 319,119 + HMPREF1058_RS03265 0.87 -1.1 319,120 - HMPREF1058_RS03265 0.87 +0.1 319,120 - HMPREF1058_RS03265 0.87 -3.2 319,120 - HMPREF1058_RS03265 0.87 -1.5 319,121 + HMPREF1058_RS03265 0.87 -2.5 319,121 + HMPREF1058_RS03265 0.87 -1.1 319,121 + HMPREF1058_RS03265 0.87 -1.3 319,122 - HMPREF1058_RS03265 0.87 -1.7 319,167 - -1.5 319,259 - -1.3 319,263 + +0.4 319,298 + +0.3 319,300 + -0.3 319,300 + +0.3 319,301 - -2.7 319,424 + HMPREF1058_RS03260 0.12 -0.7 319,425 - HMPREF1058_RS03260 0.12 -0.8 319,483 + HMPREF1058_RS03260 0.20 -1.1 319,516 + HMPREF1058_RS03260 0.25 -3.5 319,621 + HMPREF1058_RS03260 0.40 -0.9 319,683 + HMPREF1058_RS03260 0.49 -1.6 319,696 + HMPREF1058_RS03260 0.51 -0.7 319,697 - -0.9 319,730 + HMPREF1058_RS03260 0.56 -2.4 319,731 - HMPREF1058_RS03260 0.56 -2.7 319,739 + HMPREF1058_RS03260 0.57 +0.1 319,740 - HMPREF1058_RS03260 0.57 -0.4 319,768 + HMPREF1058_RS03260 0.61 -2.4 319,768 + HMPREF1058_RS03260 0.61 -1.4 319,769 - HMPREF1058_RS03260 0.61 -1.9 319,770 + HMPREF1058_RS03260 0.61 -1.8 319,770 + HMPREF1058_RS03260 0.61 -0.1 319,898 - HMPREF1058_RS03260 0.80 -1.6 319,919 - HMPREF1058_RS03260 0.83 -1.0 319,919 - HMPREF1058_RS03260 0.83 -1.7 319,919 - HMPREF1058_RS03260 0.83 -1.8 319,919 - HMPREF1058_RS03260 0.83 -1.8 319,952 + HMPREF1058_RS03260 0.88 -1.5 319,962 + HMPREF1058_RS03260 0.89 -2.8 319,987 + -3.3 320,002 + -1.2 320,068 + -1.6 320,160 + -0.0 320,160 + -0.2 320,160 + -0.3 320,161 - -0.2 320,161 - +1.0 320,161 - -2.0 320,239 + -0.3
Or see this region's nucleotide sequence