Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS03080 and HMPREF1058_RS03075 are separated by 157 nucleotides HMPREF1058_RS03075 and HMPREF1058_RS03070 are separated by 138 nucleotides
HMPREF1058_RS03080: HMPREF1058_RS03080 - ATP-dependent Clp protease ATP-binding subunit ClpX, at 15,353 to 16,603
_RS03080
HMPREF1058_RS03075: HMPREF1058_RS03075 - DNA helicase RecQ, at 16,761 to 18,941
_RS03075
HMPREF1058_RS03070: HMPREF1058_RS03070 - tetratricopeptide repeat protein, at 19,080 to 20,843
_RS03070
Position (kb) 16
17
18
19 Strain fitness (log2 ratio) -2
-1
0
1 at 15.872 kb on - strand, within HMPREF1058_RS03080 at 15.940 kb on + strand, within HMPREF1058_RS03080 at 15.952 kb on + strand, within HMPREF1058_RS03080 at 15.978 kb on + strand, within HMPREF1058_RS03080 at 15.978 kb on + strand, within HMPREF1058_RS03080 at 15.978 kb on + strand, within HMPREF1058_RS03080 at 16.158 kb on + strand, within HMPREF1058_RS03080 at 16.191 kb on + strand, within HMPREF1058_RS03080 at 16.214 kb on + strand, within HMPREF1058_RS03080 at 16.216 kb on + strand, within HMPREF1058_RS03080 at 16.217 kb on - strand, within HMPREF1058_RS03080 at 16.286 kb on + strand, within HMPREF1058_RS03080 at 16.286 kb on + strand, within HMPREF1058_RS03080 at 16.321 kb on + strand, within HMPREF1058_RS03080 at 16.364 kb on - strand, within HMPREF1058_RS03080 at 16.420 kb on + strand, within HMPREF1058_RS03080 at 16.420 kb on + strand, within HMPREF1058_RS03080 at 16.420 kb on + strand, within HMPREF1058_RS03080 at 16.425 kb on + strand, within HMPREF1058_RS03080 at 16.435 kb on + strand, within HMPREF1058_RS03080 at 16.442 kb on + strand, within HMPREF1058_RS03080 at 16.445 kb on - strand, within HMPREF1058_RS03080 at 16.601 kb on + strand at 16.601 kb on + strand at 16.655 kb on + strand at 16.692 kb on + strand at 16.719 kb on + strand at 16.757 kb on + strand at 16.952 kb on + strand at 17.062 kb on + strand, within HMPREF1058_RS03075 at 17.062 kb on + strand, within HMPREF1058_RS03075 at 17.109 kb on + strand, within HMPREF1058_RS03075 at 17.255 kb on + strand, within HMPREF1058_RS03075 at 17.266 kb on + strand, within HMPREF1058_RS03075 at 17.444 kb on + strand, within HMPREF1058_RS03075 at 17.474 kb on + strand, within HMPREF1058_RS03075 at 17.474 kb on + strand, within HMPREF1058_RS03075 at 17.478 kb on + strand, within HMPREF1058_RS03075 at 17.573 kb on + strand, within HMPREF1058_RS03075 at 17.573 kb on + strand, within HMPREF1058_RS03075 at 17.612 kb on + strand, within HMPREF1058_RS03075 at 17.626 kb on + strand, within HMPREF1058_RS03075 at 17.680 kb on + strand, within HMPREF1058_RS03075 at 17.680 kb on + strand, within HMPREF1058_RS03075 at 17.685 kb on + strand, within HMPREF1058_RS03075 at 17.885 kb on + strand, within HMPREF1058_RS03075 at 17.928 kb on + strand, within HMPREF1058_RS03075 at 18.058 kb on + strand, within HMPREF1058_RS03075 at 18.962 kb on + strand at 18.967 kb on - strand at 19.015 kb on - strand at 19.017 kb on - strand at 19.022 kb on - strand at 19.051 kb on - strand at 19.053 kb on - strand at 19.176 kb on + strand at 19.308 kb on - strand, within HMPREF1058_RS03070 at 19.308 kb on - strand, within HMPREF1058_RS03070 at 19.390 kb on - strand, within HMPREF1058_RS03070 at 19.404 kb on + strand, within HMPREF1058_RS03070 at 19.443 kb on + strand, within HMPREF1058_RS03070 at 19.488 kb on + strand, within HMPREF1058_RS03070 at 19.489 kb on - strand, within HMPREF1058_RS03070 at 19.563 kb on + strand, within HMPREF1058_RS03070 at 19.565 kb on + strand, within HMPREF1058_RS03070 at 19.565 kb on + strand, within HMPREF1058_RS03070 at 19.565 kb on + strand, within HMPREF1058_RS03070 at 19.566 kb on - strand, within HMPREF1058_RS03070 at 19.595 kb on - strand, within HMPREF1058_RS03070 at 19.618 kb on + strand, within HMPREF1058_RS03070 at 19.648 kb on + strand, within HMPREF1058_RS03070 at 19.667 kb on + strand, within HMPREF1058_RS03070 at 19.680 kb on + strand, within HMPREF1058_RS03070 at 19.681 kb on - strand, within HMPREF1058_RS03070 at 19.697 kb on - strand, within HMPREF1058_RS03070 at 19.760 kb on + strand, within HMPREF1058_RS03070 at 19.760 kb on + strand, within HMPREF1058_RS03070 at 19.801 kb on + strand, within HMPREF1058_RS03070 at 19.805 kb on - strand, within HMPREF1058_RS03070 at 19.823 kb on + strand, within HMPREF1058_RS03070 at 19.824 kb on - strand, within HMPREF1058_RS03070 at 19.825 kb on + strand, within HMPREF1058_RS03070 at 19.825 kb on + strand, within HMPREF1058_RS03070 at 19.825 kb on + strand, within HMPREF1058_RS03070 at 19.826 kb on - strand, within HMPREF1058_RS03070 at 19.867 kb on + strand, within HMPREF1058_RS03070 at 19.868 kb on - strand, within HMPREF1058_RS03070 at 19.868 kb on - strand, within HMPREF1058_RS03070 at 19.870 kb on - strand, within HMPREF1058_RS03070 at 19.870 kb on - strand, within HMPREF1058_RS03070 at 19.873 kb on + strand, within HMPREF1058_RS03070 at 19.873 kb on + strand, within HMPREF1058_RS03070 at 19.873 kb on + strand, within HMPREF1058_RS03070 at 19.874 kb on - strand, within HMPREF1058_RS03070 at 19.874 kb on - strand, within HMPREF1058_RS03070 at 19.900 kb on + strand, within HMPREF1058_RS03070 at 19.903 kb on - strand, within HMPREF1058_RS03070 at 19.903 kb on - strand, within HMPREF1058_RS03070 at 19.903 kb on - strand, within HMPREF1058_RS03070 at 19.915 kb on - strand, within HMPREF1058_RS03070 at 19.918 kb on + strand, within HMPREF1058_RS03070 at 19.919 kb on - strand, within HMPREF1058_RS03070
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 15,872 - HMPREF1058_RS03080 0.41 +0.8 15,940 + HMPREF1058_RS03080 0.47 -0.0 15,952 + HMPREF1058_RS03080 0.48 +0.4 15,978 + HMPREF1058_RS03080 0.50 +0.4 15,978 + HMPREF1058_RS03080 0.50 -1.1 15,978 + HMPREF1058_RS03080 0.50 +0.3 16,158 + HMPREF1058_RS03080 0.64 +1.0 16,191 + HMPREF1058_RS03080 0.67 -0.2 16,214 + HMPREF1058_RS03080 0.69 -0.6 16,216 + HMPREF1058_RS03080 0.69 -1.8 16,217 - HMPREF1058_RS03080 0.69 -1.4 16,286 + HMPREF1058_RS03080 0.75 +0.1 16,286 + HMPREF1058_RS03080 0.75 -1.6 16,321 + HMPREF1058_RS03080 0.77 +1.6 16,364 - HMPREF1058_RS03080 0.81 -1.4 16,420 + HMPREF1058_RS03080 0.85 +1.1 16,420 + HMPREF1058_RS03080 0.85 -0.1 16,420 + HMPREF1058_RS03080 0.85 -0.9 16,425 + HMPREF1058_RS03080 0.86 -0.8 16,435 + HMPREF1058_RS03080 0.86 +0.5 16,442 + HMPREF1058_RS03080 0.87 -0.3 16,445 - HMPREF1058_RS03080 0.87 +0.1 16,601 + +0.1 16,601 + -1.3 16,655 + +0.1 16,692 + +0.4 16,719 + -0.6 16,757 + -0.4 16,952 + -1.2 17,062 + HMPREF1058_RS03075 0.14 -1.2 17,062 + HMPREF1058_RS03075 0.14 -2.6 17,109 + HMPREF1058_RS03075 0.16 -1.2 17,255 + HMPREF1058_RS03075 0.23 -0.6 17,266 + HMPREF1058_RS03075 0.23 +0.1 17,444 + HMPREF1058_RS03075 0.31 -1.2 17,474 + HMPREF1058_RS03075 0.33 -2.6 17,474 + HMPREF1058_RS03075 0.33 -1.2 17,478 + HMPREF1058_RS03075 0.33 -0.4 17,573 + HMPREF1058_RS03075 0.37 -0.9 17,573 + HMPREF1058_RS03075 0.37 -2.6 17,612 + HMPREF1058_RS03075 0.39 -1.2 17,626 + HMPREF1058_RS03075 0.40 -1.4 17,680 + HMPREF1058_RS03075 0.42 -1.2 17,680 + HMPREF1058_RS03075 0.42 -1.2 17,685 + HMPREF1058_RS03075 0.42 +1.1 17,885 + HMPREF1058_RS03075 0.52 +0.1 17,928 + HMPREF1058_RS03075 0.54 -2.3 18,058 + HMPREF1058_RS03075 0.59 +0.1 18,962 + +1.3 18,967 - +1.7 19,015 - +0.8 19,017 - +0.6 19,022 - -0.1 19,051 - +0.3 19,053 - +0.9 19,176 + +0.1 19,308 - HMPREF1058_RS03070 0.13 -0.4 19,308 - HMPREF1058_RS03070 0.13 -0.3 19,390 - HMPREF1058_RS03070 0.18 +0.9 19,404 + HMPREF1058_RS03070 0.18 +0.3 19,443 + HMPREF1058_RS03070 0.21 +0.0 19,488 + HMPREF1058_RS03070 0.23 +0.5 19,489 - HMPREF1058_RS03070 0.23 +1.1 19,563 + HMPREF1058_RS03070 0.27 +0.0 19,565 + HMPREF1058_RS03070 0.27 -0.2 19,565 + HMPREF1058_RS03070 0.27 -2.2 19,565 + HMPREF1058_RS03070 0.27 +0.5 19,566 - HMPREF1058_RS03070 0.28 -0.2 19,595 - HMPREF1058_RS03070 0.29 +0.9 19,618 + HMPREF1058_RS03070 0.30 -0.2 19,648 + HMPREF1058_RS03070 0.32 +0.6 19,667 + HMPREF1058_RS03070 0.33 +0.6 19,680 + HMPREF1058_RS03070 0.34 +0.2 19,681 - HMPREF1058_RS03070 0.34 -0.1 19,697 - HMPREF1058_RS03070 0.35 -0.4 19,760 + HMPREF1058_RS03070 0.39 +0.5 19,760 + HMPREF1058_RS03070 0.39 +0.7 19,801 + HMPREF1058_RS03070 0.41 +0.8 19,805 - HMPREF1058_RS03070 0.41 -1.5 19,823 + HMPREF1058_RS03070 0.42 +0.6 19,824 - HMPREF1058_RS03070 0.42 -0.3 19,825 + HMPREF1058_RS03070 0.42 +0.4 19,825 + HMPREF1058_RS03070 0.42 +0.3 19,825 + HMPREF1058_RS03070 0.42 +1.4 19,826 - HMPREF1058_RS03070 0.42 +0.5 19,867 + HMPREF1058_RS03070 0.45 +0.8 19,868 - HMPREF1058_RS03070 0.45 -0.9 19,868 - HMPREF1058_RS03070 0.45 -0.4 19,870 - HMPREF1058_RS03070 0.45 +0.6 19,870 - HMPREF1058_RS03070 0.45 -0.8 19,873 + HMPREF1058_RS03070 0.45 +0.0 19,873 + HMPREF1058_RS03070 0.45 +0.4 19,873 + HMPREF1058_RS03070 0.45 -0.2 19,874 - HMPREF1058_RS03070 0.45 +0.8 19,874 - HMPREF1058_RS03070 0.45 -0.1 19,900 + HMPREF1058_RS03070 0.46 -0.1 19,903 - HMPREF1058_RS03070 0.47 -0.8 19,903 - HMPREF1058_RS03070 0.47 +0.5 19,903 - HMPREF1058_RS03070 0.47 +0.1 19,915 - HMPREF1058_RS03070 0.47 +0.1 19,918 + HMPREF1058_RS03070 0.48 +1.1 19,919 - HMPREF1058_RS03070 0.48 +0.6
Or see this region's nucleotide sequence