Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS02760 and HMPREF1058_RS02755 are separated by 709 nucleotides HMPREF1058_RS02755 and HMPREF1058_RS02750 overlap by 4 nucleotides
HMPREF1058_RS02760: HMPREF1058_RS02760 - peptidylprolyl isomerase, at 100,304 to 101,149
_RS02760
HMPREF1058_RS02755: HMPREF1058_RS02755 - translocation/assembly module TamB domain-containing protein, at 101,859 to 106,508
_RS02755
HMPREF1058_RS02750: HMPREF1058_RS02750 - BamA/TamA family outer membrane protein, at 106,505 to 108,862
_RS02750
Position (kb) 101
102
103
104
105
106
107 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 100.936 kb on - strand, within HMPREF1058_RS02760 at 100.937 kb on + strand, within HMPREF1058_RS02760 at 100.938 kb on - strand, within HMPREF1058_RS02760 at 100.991 kb on - strand, within HMPREF1058_RS02760 at 100.992 kb on + strand, within HMPREF1058_RS02760 at 101.124 kb on - strand at 101.127 kb on - strand at 101.197 kb on + strand at 101.251 kb on + strand at 101.320 kb on - strand at 101.425 kb on - strand at 101.475 kb on + strand at 101.556 kb on + strand at 101.561 kb on + strand at 101.711 kb on - strand at 101.711 kb on - strand at 101.926 kb on + strand at 101.932 kb on + strand at 101.983 kb on + strand at 102.068 kb on - strand at 102.092 kb on + strand at 102.201 kb on - strand at 102.421 kb on + strand, within HMPREF1058_RS02755 at 102.523 kb on - strand, within HMPREF1058_RS02755 at 102.680 kb on + strand, within HMPREF1058_RS02755 at 102.692 kb on - strand, within HMPREF1058_RS02755 at 102.897 kb on - strand, within HMPREF1058_RS02755 at 103.287 kb on - strand, within HMPREF1058_RS02755 at 103.287 kb on - strand, within HMPREF1058_RS02755 at 104.036 kb on + strand, within HMPREF1058_RS02755 at 104.086 kb on + strand, within HMPREF1058_RS02755 at 104.203 kb on - strand, within HMPREF1058_RS02755 at 104.257 kb on + strand, within HMPREF1058_RS02755 at 104.257 kb on + strand, within HMPREF1058_RS02755 at 104.414 kb on - strand, within HMPREF1058_RS02755 at 104.415 kb on + strand, within HMPREF1058_RS02755 at 104.415 kb on + strand, within HMPREF1058_RS02755 at 104.417 kb on + strand, within HMPREF1058_RS02755 at 104.418 kb on - strand, within HMPREF1058_RS02755 at 104.489 kb on - strand, within HMPREF1058_RS02755 at 104.522 kb on + strand, within HMPREF1058_RS02755 at 104.599 kb on - strand, within HMPREF1058_RS02755 at 104.731 kb on - strand, within HMPREF1058_RS02755 at 104.732 kb on + strand, within HMPREF1058_RS02755 at 104.749 kb on - strand, within HMPREF1058_RS02755 at 104.871 kb on + strand, within HMPREF1058_RS02755 at 104.872 kb on - strand, within HMPREF1058_RS02755 at 104.872 kb on - strand, within HMPREF1058_RS02755 at 104.960 kb on - strand, within HMPREF1058_RS02755 at 105.421 kb on + strand, within HMPREF1058_RS02755 at 105.444 kb on + strand, within HMPREF1058_RS02755 at 105.590 kb on + strand, within HMPREF1058_RS02755 at 105.643 kb on - strand, within HMPREF1058_RS02755 at 106.060 kb on - strand at 106.331 kb on - strand at 106.424 kb on - strand at 106.493 kb on + strand at 106.493 kb on + strand at 106.539 kb on + strand at 106.539 kb on + strand at 106.551 kb on + strand at 106.552 kb on - strand at 106.620 kb on + strand at 106.622 kb on + strand at 106.721 kb on - strand at 106.860 kb on - strand at 106.860 kb on - strand, within HMPREF1058_RS02750 at 107.082 kb on - strand, within HMPREF1058_RS02750 at 107.297 kb on + strand, within HMPREF1058_RS02750 at 107.299 kb on + strand, within HMPREF1058_RS02750 at 107.309 kb on - strand, within HMPREF1058_RS02750 at 107.309 kb on - strand, within HMPREF1058_RS02750 at 107.309 kb on - strand, within HMPREF1058_RS02750 at 107.319 kb on - strand, within HMPREF1058_RS02750 at 107.386 kb on + strand, within HMPREF1058_RS02750
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 100,936 - HMPREF1058_RS02760 0.75 -0.7 100,937 + HMPREF1058_RS02760 0.75 -0.4 100,938 - HMPREF1058_RS02760 0.75 +0.1 100,991 - HMPREF1058_RS02760 0.81 +0.4 100,992 + HMPREF1058_RS02760 0.81 -0.0 101,124 - +0.5 101,127 - +0.1 101,197 + +2.7 101,251 + -0.8 101,320 - +1.1 101,425 - -0.8 101,475 + -0.4 101,556 + -0.1 101,561 + +0.7 101,711 - -1.0 101,711 - +0.1 101,926 + -1.2 101,932 + -2.2 101,983 + -1.2 102,068 - -1.9 102,092 + -2.0 102,201 - -1.4 102,421 + HMPREF1058_RS02755 0.12 -0.4 102,523 - HMPREF1058_RS02755 0.14 -0.4 102,680 + HMPREF1058_RS02755 0.18 -1.9 102,692 - HMPREF1058_RS02755 0.18 -2.2 102,897 - HMPREF1058_RS02755 0.22 -0.4 103,287 - HMPREF1058_RS02755 0.31 -1.2 103,287 - HMPREF1058_RS02755 0.31 -1.9 104,036 + HMPREF1058_RS02755 0.47 -2.3 104,086 + HMPREF1058_RS02755 0.48 -2.3 104,203 - HMPREF1058_RS02755 0.50 -2.8 104,257 + HMPREF1058_RS02755 0.52 -1.2 104,257 + HMPREF1058_RS02755 0.52 -2.0 104,414 - HMPREF1058_RS02755 0.55 -2.7 104,415 + HMPREF1058_RS02755 0.55 -1.7 104,415 + HMPREF1058_RS02755 0.55 -2.0 104,417 + HMPREF1058_RS02755 0.55 -1.4 104,418 - HMPREF1058_RS02755 0.55 -1.2 104,489 - HMPREF1058_RS02755 0.57 -0.9 104,522 + HMPREF1058_RS02755 0.57 -1.2 104,599 - HMPREF1058_RS02755 0.59 -1.2 104,731 - HMPREF1058_RS02755 0.62 -2.2 104,732 + HMPREF1058_RS02755 0.62 -3.9 104,749 - HMPREF1058_RS02755 0.62 -1.7 104,871 + HMPREF1058_RS02755 0.65 -1.4 104,872 - HMPREF1058_RS02755 0.65 -1.2 104,872 - HMPREF1058_RS02755 0.65 -2.9 104,960 - HMPREF1058_RS02755 0.67 -2.0 105,421 + HMPREF1058_RS02755 0.77 -3.0 105,444 + HMPREF1058_RS02755 0.77 -2.7 105,590 + HMPREF1058_RS02755 0.80 -1.4 105,643 - HMPREF1058_RS02755 0.81 -3.2 106,060 - -1.7 106,331 - -0.9 106,424 - +0.1 106,493 + -1.3 106,493 + +0.2 106,539 + -2.6 106,539 + -1.2 106,551 + -0.2 106,552 - -2.3 106,620 + -1.2 106,622 + -0.9 106,721 - -1.4 106,860 - -1.4 106,860 - HMPREF1058_RS02750 0.15 -3.1 107,082 - HMPREF1058_RS02750 0.24 -1.2 107,297 + HMPREF1058_RS02750 0.34 -3.0 107,299 + HMPREF1058_RS02750 0.34 -1.9 107,309 - HMPREF1058_RS02750 0.34 -1.4 107,309 - HMPREF1058_RS02750 0.34 -2.2 107,309 - HMPREF1058_RS02750 0.34 -0.9 107,319 - HMPREF1058_RS02750 0.35 -2.8 107,386 + HMPREF1058_RS02750 0.37 -2.3
Or see this region's nucleotide sequence