Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02750

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
105,590	+		HMPREF1058_RS02755	0.80	-1.4
105,643	-		HMPREF1058_RS02755	0.81	-3.2
106,060	-				-1.7
106,331	-				-0.9
106,424	-				+0.1
106,493	+				-1.3
106,493	+				+0.2
106,539	+				-2.6
106,539	+				-1.2
106,551	+				-0.2
106,552	-				-2.3
106,620	+				-1.2
106,622	+				-0.9
106,721	-				-1.4
106,860	-				-1.4
106,860	-		HMPREF1058_RS02750	0.15	-3.1
107,082	-		HMPREF1058_RS02750	0.24	-1.2
107,297	+		HMPREF1058_RS02750	0.34	-3.0
107,299	+		HMPREF1058_RS02750	0.34	-1.9
107,309	-		HMPREF1058_RS02750	0.34	-1.4
107,309	-		HMPREF1058_RS02750	0.34	-2.2
107,309	-		HMPREF1058_RS02750	0.34	-0.9
107,319	-		HMPREF1058_RS02750	0.35	-2.8
107,386	+		HMPREF1058_RS02750	0.37	-2.3
107,546	-		HMPREF1058_RS02750	0.44	-0.4
107,564	-		HMPREF1058_RS02750	0.45	-0.4
107,604	-		HMPREF1058_RS02750	0.47	+0.1
107,790	-				-0.9
108,035	-		HMPREF1058_RS02750	0.65	-1.4
108,037	+		HMPREF1058_RS02750	0.65	-1.4
108,037	+		HMPREF1058_RS02750	0.65	-0.4
108,037	+		HMPREF1058_RS02750	0.65	-1.7
108,121	+		HMPREF1058_RS02750	0.69	+1.1
108,122	-		HMPREF1058_RS02750	0.69	-1.2
108,128	-		HMPREF1058_RS02750	0.69	-1.7
108,216	-		HMPREF1058_RS02750	0.73	-1.9
108,369	-		HMPREF1058_RS02750	0.79	-1.4
108,501	-		HMPREF1058_RS02750	0.85	-0.9
108,646	-				-1.7
108,800	+				-0.6
108,806	-				-1.2
108,812	-				-3.2
108,860	+				-0.1
108,861	-				-1.9
108,866	+				-0.2