Strain Fitness in Phocaeicola vulgatus CL09T03C04 around HMPREF1058_RS02115

Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1058_RS02120 and HMPREF1058_RS02115 are separated by 301 nucleotidesHMPREF1058_RS02115 and HMPREF1058_RS02110 are separated by 466 nucleotides HMPREF1058_RS02120: HMPREF1058_RS02120 - PCMD domain-containing protein, at 280,620 to 281,711 _RS02120 HMPREF1058_RS02115: HMPREF1058_RS02115 - NADP-specific glutamate dehydrogenase, at 282,013 to 283,347 _RS02115 HMPREF1058_RS02110: HMPREF1058_RS02110 - NADP-dependent malic enzyme, at 283,814 to 286,099 _RS02110 Position (kb) 282 283 284Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 281.013 kb on - strand, within HMPREF1058_RS02120at 281.013 kb on - strand, within HMPREF1058_RS02120at 281.015 kb on - strand, within HMPREF1058_RS02120at 281.015 kb on - strand, within HMPREF1058_RS02120at 281.067 kb on - strand, within HMPREF1058_RS02120at 281.079 kb on - strand, within HMPREF1058_RS02120at 281.079 kb on - strand, within HMPREF1058_RS02120at 281.157 kb on + strand, within HMPREF1058_RS02120at 281.211 kb on - strand, within HMPREF1058_RS02120at 281.222 kb on + strand, within HMPREF1058_RS02120at 281.223 kb on - strand, within HMPREF1058_RS02120at 281.236 kb on - strand, within HMPREF1058_RS02120at 281.243 kb on + strand, within HMPREF1058_RS02120at 281.251 kb on + strand, within HMPREF1058_RS02120at 281.297 kb on + strand, within HMPREF1058_RS02120at 281.297 kb on + strand, within HMPREF1058_RS02120at 281.308 kb on + strand, within HMPREF1058_RS02120at 281.311 kb on - strand, within HMPREF1058_RS02120at 281.378 kb on + strand, within HMPREF1058_RS02120at 281.378 kb on + strand, within HMPREF1058_RS02120at 281.379 kb on - strand, within HMPREF1058_RS02120at 281.380 kb on + strand, within HMPREF1058_RS02120at 281.380 kb on + strand, within HMPREF1058_RS02120at 281.381 kb on - strand, within HMPREF1058_RS02120at 281.381 kb on - strand, within HMPREF1058_RS02120at 281.430 kb on - strand, within HMPREF1058_RS02120at 281.431 kb on + strand, within HMPREF1058_RS02120at 281.431 kb on + strand, within HMPREF1058_RS02120at 281.554 kb on - strand, within HMPREF1058_RS02120at 281.574 kb on - strand, within HMPREF1058_RS02120at 281.574 kb on - strand, within HMPREF1058_RS02120at 281.574 kb on - strand, within HMPREF1058_RS02120at 281.587 kb on - strand, within HMPREF1058_RS02120at 281.634 kb on - strandat 281.634 kb on - strandat 281.670 kb on + strandat 281.679 kb on + strandat 281.684 kb on + strandat 281.694 kb on + strandat 281.695 kb on - strandat 281.742 kb on + strandat 281.753 kb on + strandat 281.861 kb on - strandat 281.940 kb on + strandat 281.988 kb on + strandat 281.991 kb on - strandat 281.991 kb on - strandat 281.991 kb on - strandat 281.991 kb on - strandat 281.993 kb on + strandat 282.012 kb on - strandat 282.036 kb on + strandat 282.064 kb on + strandat 282.065 kb on - strandat 282.083 kb on + strandat 282.088 kb on + strandat 282.088 kb on + strandat 282.088 kb on + strandat 282.119 kb on - strandat 282.148 kb on - strand, within HMPREF1058_RS02115at 282.230 kb on - strand, within HMPREF1058_RS02115at 282.337 kb on + strand, within HMPREF1058_RS02115at 282.338 kb on - strand, within HMPREF1058_RS02115at 282.446 kb on - strand, within HMPREF1058_RS02115at 282.449 kb on + strand, within HMPREF1058_RS02115at 282.449 kb on + strand, within HMPREF1058_RS02115at 282.554 kb on + strand, within HMPREF1058_RS02115at 282.554 kb on + strand, within HMPREF1058_RS02115at 282.555 kb on - strand, within HMPREF1058_RS02115at 282.560 kb on + strand, within HMPREF1058_RS02115at 282.561 kb on - strand, within HMPREF1058_RS02115at 282.583 kb on - strand, within HMPREF1058_RS02115at 282.587 kb on - strand, within HMPREF1058_RS02115at 282.591 kb on + strand, within HMPREF1058_RS02115at 282.632 kb on - strand, within HMPREF1058_RS02115at 282.710 kb on + strand, within HMPREF1058_RS02115at 282.710 kb on + strand, within HMPREF1058_RS02115at 282.711 kb on - strand, within HMPREF1058_RS02115at 282.832 kb on + strand, within HMPREF1058_RS02115at 282.848 kb on - strand, within HMPREF1058_RS02115at 282.868 kb on + strand, within HMPREF1058_RS02115at 282.869 kb on - strand, within HMPREF1058_RS02115at 283.000 kb on - strand, within HMPREF1058_RS02115at 283.057 kb on + strand, within HMPREF1058_RS02115at 283.108 kb on - strand, within HMPREF1058_RS02115at 283.108 kb on - strand, within HMPREF1058_RS02115at 283.289 kb on + strandat 283.336 kb on - strandat 283.352 kb on + strandat 283.363 kb on - strandat 283.376 kb on - strandat 283.378 kb on + strandat 283.533 kb on + strandat 283.619 kb on - strandat 283.685 kb on + strandat 283.686 kb on - strandat 283.688 kb on + strandat 283.736 kb on - strandat 283.743 kb on + strandat 283.773 kb on - strandat 283.784 kb on + strandat 283.784 kb on + strandat 283.790 kb on + strandat 283.812 kb on - strandat 283.875 kb on - strandat 283.967 kb on - strandat 284.015 kb on + strandat 284.028 kb on - strandat 284.114 kb on + strand, within HMPREF1058_RS02110at 284.115 kb on - strand, within HMPREF1058_RS02110at 284.143 kb on + strand, within HMPREF1058_RS02110at 284.143 kb on + strand, within HMPREF1058_RS02110at 284.144 kb on - strand, within HMPREF1058_RS02110at 284.163 kb on - strand, within HMPREF1058_RS02110at 284.168 kb on - strand, within HMPREF1058_RS02110at 284.185 kb on + strand, within HMPREF1058_RS02110at 284.328 kb on + strand, within HMPREF1058_RS02110at 284.328 kb on + strand, within HMPREF1058_RS02110at 284.328 kb on + strand, within HMPREF1058_RS02110

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Per-strain Table

Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
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281,013 - HMPREF1058_RS02120 0.36 -0.6
281,013 - HMPREF1058_RS02120 0.36 -1.2
281,015 - HMPREF1058_RS02120 0.36 +0.5
281,015 - HMPREF1058_RS02120 0.36 -1.4
281,067 - HMPREF1058_RS02120 0.41 +0.3
281,079 - HMPREF1058_RS02120 0.42 -2.2
281,079 - HMPREF1058_RS02120 0.42 +0.1
281,157 + HMPREF1058_RS02120 0.49 -1.2
281,211 - HMPREF1058_RS02120 0.54 +0.8
281,222 + HMPREF1058_RS02120 0.55 -0.2
281,223 - HMPREF1058_RS02120 0.55 +0.6
281,236 - HMPREF1058_RS02120 0.56 +1.6
281,243 + HMPREF1058_RS02120 0.57 -0.5
281,251 + HMPREF1058_RS02120 0.58 +0.6
281,297 + HMPREF1058_RS02120 0.62 -0.3
281,297 + HMPREF1058_RS02120 0.62 +2.1
281,308 + HMPREF1058_RS02120 0.63 +0.6
281,311 - HMPREF1058_RS02120 0.63 +0.2
281,378 + HMPREF1058_RS02120 0.69 -0.9
281,378 + HMPREF1058_RS02120 0.69 -0.5
281,379 - HMPREF1058_RS02120 0.70 +0.1
281,380 + HMPREF1058_RS02120 0.70 -1.1
281,380 + HMPREF1058_RS02120 0.70 -0.5
281,381 - HMPREF1058_RS02120 0.70 -2.7
281,381 - HMPREF1058_RS02120 0.70 +1.3
281,430 - HMPREF1058_RS02120 0.74 -1.2
281,431 + HMPREF1058_RS02120 0.74 -0.3
281,431 + HMPREF1058_RS02120 0.74 -0.4
281,554 - HMPREF1058_RS02120 0.86 +1.0
281,574 - HMPREF1058_RS02120 0.87 -0.4
281,574 - HMPREF1058_RS02120 0.87 +0.5
281,574 - HMPREF1058_RS02120 0.87 +0.6
281,587 - HMPREF1058_RS02120 0.89 +1.2
281,634 - +0.1
281,634 - -0.2
281,670 + +1.1
281,679 + +0.1
281,684 + +0.3
281,694 + -0.4
281,695 - -0.9
281,742 + -0.4
281,753 + -0.4
281,861 - +0.8
281,940 + +0.2
281,988 + -0.4
281,991 - +0.4
281,991 - +0.4
281,991 - +0.3
281,991 - -0.1
281,993 + -1.4
282,012 - +0.3
282,036 + -2.7
282,064 + -3.9
282,065 - -2.4
282,083 + -0.9
282,088 + -2.3
282,088 + -1.3
282,088 + -2.3
282,119 - -1.4
282,148 - HMPREF1058_RS02115 0.10 -1.5
282,230 - HMPREF1058_RS02115 0.16 -1.7
282,337 + HMPREF1058_RS02115 0.24 -3.2
282,338 - HMPREF1058_RS02115 0.24 -1.9
282,446 - HMPREF1058_RS02115 0.32 -0.3
282,449 + HMPREF1058_RS02115 0.33 -2.9
282,449 + HMPREF1058_RS02115 0.33 -2.9
282,554 + HMPREF1058_RS02115 0.41 -1.4
282,554 + HMPREF1058_RS02115 0.41 -1.2
282,555 - HMPREF1058_RS02115 0.41 -1.8
282,560 + HMPREF1058_RS02115 0.41 -0.9
282,561 - HMPREF1058_RS02115 0.41 -1.2
282,583 - HMPREF1058_RS02115 0.43 -2.3
282,587 - HMPREF1058_RS02115 0.43 -0.9
282,591 + HMPREF1058_RS02115 0.43 -2.8
282,632 - HMPREF1058_RS02115 0.46 -2.5
282,710 + HMPREF1058_RS02115 0.52 -2.3
282,710 + HMPREF1058_RS02115 0.52 -2.4
282,711 - HMPREF1058_RS02115 0.52 -2.6
282,832 + HMPREF1058_RS02115 0.61 -0.8
282,848 - HMPREF1058_RS02115 0.63 -2.9
282,868 + HMPREF1058_RS02115 0.64 -2.3
282,869 - HMPREF1058_RS02115 0.64 -1.7
283,000 - HMPREF1058_RS02115 0.74 -1.1
283,057 + HMPREF1058_RS02115 0.78 -2.3
283,108 - HMPREF1058_RS02115 0.82 -2.5
283,108 - HMPREF1058_RS02115 0.82 -2.7
283,289 + -0.9
283,336 - -2.8
283,352 + -0.4
283,363 - -1.2
283,376 - +0.0
283,378 + -1.6
283,533 + -0.6
283,619 - +1.0
283,685 + -0.2
283,686 - +0.2
283,688 + +0.1
283,736 - -0.9
283,743 + +0.9
283,773 - +0.2
283,784 + +0.9
283,784 + +0.1
283,790 + +0.7
283,812 - +0.3
283,875 - -0.0
283,967 - -0.3
284,015 + -1.5
284,028 - +0.1
284,114 + HMPREF1058_RS02110 0.13 -1.8
284,115 - HMPREF1058_RS02110 0.13 -1.3
284,143 + HMPREF1058_RS02110 0.14 -1.0
284,143 + HMPREF1058_RS02110 0.14 -1.3
284,144 - HMPREF1058_RS02110 0.14 -0.3
284,163 - HMPREF1058_RS02110 0.15 -0.9
284,168 - HMPREF1058_RS02110 0.15 -0.9
284,185 + HMPREF1058_RS02110 0.16 -1.9
284,328 + HMPREF1058_RS02110 0.22 -0.8
284,328 + HMPREF1058_RS02110 0.22 -1.4
284,328 + HMPREF1058_RS02110 0.22 -0.3

Or see this region's nucleotide sequence