Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01710 and HMPREF1058_RS01705 are separated by 176 nucleotides HMPREF1058_RS01705 and HMPREF1058_RS01700 are separated by 145 nucleotides
HMPREF1058_RS01710: HMPREF1058_RS01710 - DUF4373 domain-containing protein, at 60,758 to 61,609
_RS01710
HMPREF1058_RS01705: HMPREF1058_RS01705 - Na+/H+ antiporter NhaC family protein, at 61,786 to 63,090
_RS01705
HMPREF1058_RS01700: HMPREF1058_RS01700 - altronate dehydratase, at 63,236 to 64,726
_RS01700
Position (kb) 61
62
63
64 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 60.858 kb on + strand, within HMPREF1058_RS01710 at 60.858 kb on + strand, within HMPREF1058_RS01710 at 60.859 kb on - strand, within HMPREF1058_RS01710 at 60.861 kb on - strand, within HMPREF1058_RS01710 at 60.874 kb on - strand, within HMPREF1058_RS01710 at 60.900 kb on - strand, within HMPREF1058_RS01710 at 61.151 kb on - strand, within HMPREF1058_RS01710 at 61.151 kb on - strand, within HMPREF1058_RS01710 at 61.357 kb on + strand, within HMPREF1058_RS01710 at 61.493 kb on + strand, within HMPREF1058_RS01710 at 61.493 kb on + strand, within HMPREF1058_RS01710 at 61.594 kb on - strand at 61.764 kb on + strand at 61.765 kb on - strand at 61.869 kb on + strand at 61.969 kb on - strand, within HMPREF1058_RS01705 at 62.148 kb on + strand, within HMPREF1058_RS01705 at 62.149 kb on - strand, within HMPREF1058_RS01705 at 62.150 kb on + strand, within HMPREF1058_RS01705 at 62.151 kb on - strand, within HMPREF1058_RS01705 at 62.766 kb on + strand at 62.975 kb on + strand at 63.016 kb on + strand at 63.017 kb on - strand at 63.073 kb on + strand at 63.140 kb on + strand at 63.141 kb on - strand at 63.149 kb on - strand at 63.149 kb on - strand at 63.151 kb on - strand at 63.238 kb on - strand at 63.277 kb on - strand at 63.326 kb on - strand at 63.326 kb on - strand at 63.327 kb on + strand at 63.328 kb on - strand at 63.328 kb on - strand at 63.328 kb on - strand at 63.332 kb on + strand at 63.332 kb on + strand at 63.670 kb on + strand, within HMPREF1058_RS01700 at 63.732 kb on + strand, within HMPREF1058_RS01700 at 63.733 kb on - strand, within HMPREF1058_RS01700 at 63.758 kb on + strand, within HMPREF1058_RS01700 at 63.758 kb on + strand, within HMPREF1058_RS01700 at 63.884 kb on - strand at 64.000 kb on - strand, within HMPREF1058_RS01700 at 64.067 kb on + strand, within HMPREF1058_RS01700
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 60,858 + HMPREF1058_RS01710 0.12 +0.7 60,858 + HMPREF1058_RS01710 0.12 +0.1 60,859 - HMPREF1058_RS01710 0.12 -2.5 60,861 - HMPREF1058_RS01710 0.12 +0.1 60,874 - HMPREF1058_RS01710 0.14 -3.1 60,900 - HMPREF1058_RS01710 0.17 -0.5 61,151 - HMPREF1058_RS01710 0.46 -0.5 61,151 - HMPREF1058_RS01710 0.46 -0.6 61,357 + HMPREF1058_RS01710 0.70 +0.3 61,493 + HMPREF1058_RS01710 0.86 -0.4 61,493 + HMPREF1058_RS01710 0.86 +3.2 61,594 - -0.8 61,764 + +0.1 61,765 - +0.4 61,869 + -0.1 61,969 - HMPREF1058_RS01705 0.14 -0.6 62,148 + HMPREF1058_RS01705 0.28 -2.4 62,149 - HMPREF1058_RS01705 0.28 -1.9 62,150 + HMPREF1058_RS01705 0.28 -1.3 62,151 - HMPREF1058_RS01705 0.28 +0.7 62,766 + -1.6 62,975 + -2.2 63,016 + -1.6 63,017 - -0.9 63,073 + -1.1 63,140 + -2.7 63,141 - -1.3 63,149 - -0.5 63,149 - -1.1 63,151 - -2.8 63,238 - +0.2 63,277 - -2.3 63,326 - +0.4 63,326 - -2.3 63,327 + -3.8 63,328 - -1.1 63,328 - -4.1 63,328 - -1.3 63,332 + -0.7 63,332 + -1.5 63,670 + HMPREF1058_RS01700 0.29 +0.1 63,732 + HMPREF1058_RS01700 0.33 -0.6 63,733 - HMPREF1058_RS01700 0.33 -3.1 63,758 + HMPREF1058_RS01700 0.35 -2.4 63,758 + HMPREF1058_RS01700 0.35 -2.3 63,884 - +0.1 64,000 - HMPREF1058_RS01700 0.51 -1.1 64,067 + HMPREF1058_RS01700 0.56 -1.8
Or see this region's nucleotide sequence