Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01705 and HMPREF1058_RS01700 are separated by 145 nucleotides HMPREF1058_RS01700 and HMPREF1058_RS01695 are separated by 21 nucleotides
HMPREF1058_RS01705: HMPREF1058_RS01705 - Na+/H+ antiporter NhaC family protein, at 61,786 to 63,090
_RS01705
HMPREF1058_RS01700: HMPREF1058_RS01700 - altronate dehydratase, at 63,236 to 64,726
_RS01700
HMPREF1058_RS01695: HMPREF1058_RS01695 - LacI family DNA-binding transcriptional regulator, at 64,748 to 65,821
_RS01695
Position (kb) 63
64
65 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 62.766 kb on + strand at 62.975 kb on + strand at 63.016 kb on + strand at 63.017 kb on - strand at 63.073 kb on + strand at 63.140 kb on + strand at 63.141 kb on - strand at 63.149 kb on - strand at 63.149 kb on - strand at 63.151 kb on - strand at 63.238 kb on - strand at 63.277 kb on - strand at 63.326 kb on - strand at 63.326 kb on - strand at 63.327 kb on + strand at 63.328 kb on - strand at 63.328 kb on - strand at 63.328 kb on - strand at 63.332 kb on + strand at 63.332 kb on + strand at 63.670 kb on + strand, within HMPREF1058_RS01700 at 63.732 kb on + strand, within HMPREF1058_RS01700 at 63.733 kb on - strand, within HMPREF1058_RS01700 at 63.758 kb on + strand, within HMPREF1058_RS01700 at 63.758 kb on + strand, within HMPREF1058_RS01700 at 63.884 kb on - strand at 64.000 kb on - strand, within HMPREF1058_RS01700 at 64.067 kb on + strand, within HMPREF1058_RS01700 at 64.368 kb on - strand, within HMPREF1058_RS01700 at 64.447 kb on - strand, within HMPREF1058_RS01700 at 64.548 kb on + strand, within HMPREF1058_RS01700 at 64.549 kb on - strand, within HMPREF1058_RS01700 at 64.675 kb on + strand at 64.686 kb on - strand at 64.713 kb on + strand at 64.730 kb on + strand at 64.812 kb on + strand at 64.812 kb on + strand at 64.813 kb on - strand at 64.952 kb on + strand, within HMPREF1058_RS01695 at 64.953 kb on - strand, within HMPREF1058_RS01695 at 65.001 kb on + strand, within HMPREF1058_RS01695 at 65.001 kb on + strand, within HMPREF1058_RS01695 at 65.002 kb on - strand, within HMPREF1058_RS01695 at 65.047 kb on + strand, within HMPREF1058_RS01695 at 65.129 kb on + strand, within HMPREF1058_RS01695 at 65.353 kb on + strand, within HMPREF1058_RS01695 at 65.354 kb on - strand, within HMPREF1058_RS01695 at 65.357 kb on + strand, within HMPREF1058_RS01695 at 65.357 kb on + strand, within HMPREF1058_RS01695 at 65.357 kb on + strand, within HMPREF1058_RS01695 at 65.358 kb on - strand, within HMPREF1058_RS01695 at 65.359 kb on + strand, within HMPREF1058_RS01695 at 65.361 kb on + strand, within HMPREF1058_RS01695 at 65.361 kb on + strand, within HMPREF1058_RS01695 at 65.488 kb on - strand, within HMPREF1058_RS01695 at 65.505 kb on + strand, within HMPREF1058_RS01695 at 65.506 kb on - strand at 65.655 kb on + strand, within HMPREF1058_RS01695 at 65.656 kb on - strand, within HMPREF1058_RS01695 at 65.660 kb on - strand, within HMPREF1058_RS01695 at 65.660 kb on - strand, within HMPREF1058_RS01695
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 62,766 + -1.6 62,975 + -2.2 63,016 + -1.6 63,017 - -0.9 63,073 + -1.1 63,140 + -2.7 63,141 - -1.3 63,149 - -0.5 63,149 - -1.1 63,151 - -2.8 63,238 - +0.2 63,277 - -2.3 63,326 - +0.4 63,326 - -2.3 63,327 + -3.8 63,328 - -1.1 63,328 - -4.1 63,328 - -1.3 63,332 + -0.7 63,332 + -1.5 63,670 + HMPREF1058_RS01700 0.29 +0.1 63,732 + HMPREF1058_RS01700 0.33 -0.6 63,733 - HMPREF1058_RS01700 0.33 -3.1 63,758 + HMPREF1058_RS01700 0.35 -2.4 63,758 + HMPREF1058_RS01700 0.35 -2.3 63,884 - +0.1 64,000 - HMPREF1058_RS01700 0.51 -1.1 64,067 + HMPREF1058_RS01700 0.56 -1.8 64,368 - HMPREF1058_RS01700 0.76 -1.2 64,447 - HMPREF1058_RS01700 0.81 -1.9 64,548 + HMPREF1058_RS01700 0.88 -1.4 64,549 - HMPREF1058_RS01700 0.88 -1.4 64,675 + -1.6 64,686 - -1.7 64,713 + -2.2 64,730 + -2.6 64,812 + -1.3 64,812 + +0.4 64,813 - +0.5 64,952 + HMPREF1058_RS01695 0.19 -3.7 64,953 - HMPREF1058_RS01695 0.19 +0.3 65,001 + HMPREF1058_RS01695 0.24 -1.1 65,001 + HMPREF1058_RS01695 0.24 -1.5 65,002 - HMPREF1058_RS01695 0.24 +1.4 65,047 + HMPREF1058_RS01695 0.28 -1.2 65,129 + HMPREF1058_RS01695 0.35 -1.5 65,353 + HMPREF1058_RS01695 0.56 -1.1 65,354 - HMPREF1058_RS01695 0.56 -1.3 65,357 + HMPREF1058_RS01695 0.57 +0.4 65,357 + HMPREF1058_RS01695 0.57 +2.7 65,357 + HMPREF1058_RS01695 0.57 -1.5 65,358 - HMPREF1058_RS01695 0.57 +3.7 65,359 + HMPREF1058_RS01695 0.57 -1.1 65,361 + HMPREF1058_RS01695 0.57 -0.9 65,361 + HMPREF1058_RS01695 0.57 +0.7 65,488 - HMPREF1058_RS01695 0.69 -0.2 65,505 + HMPREF1058_RS01695 0.70 -1.1 65,506 - +0.1 65,655 + HMPREF1058_RS01695 0.84 -3.1 65,656 - HMPREF1058_RS01695 0.85 -0.3 65,660 - HMPREF1058_RS01695 0.85 +0.1 65,660 - HMPREF1058_RS01695 0.85 +0.7
Or see this region's nucleotide sequence