Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS01275 and HMPREF1058_RS01270 are separated by 8 nucleotides HMPREF1058_RS01270 and HMPREF1058_RS01265 are separated by 4 nucleotides HMPREF1058_RS01265 and HMPREF1058_RS01260 are separated by 15 nucleotides
HMPREF1058_RS01275: HMPREF1058_RS01275 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 166,090 to 167,127
_RS01275
HMPREF1058_RS01270: HMPREF1058_RS01270 - bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase, at 167,136 to 167,645
_RS01270
HMPREF1058_RS01265: HMPREF1058_RS01265 - FHA domain-containing protein, at 167,650 to 168,174
_RS01265
HMPREF1058_RS01260: HMPREF1058_RS01260 - SPOR domain-containing protein, at 168,190 to 169,320
_RS01260
Position (kb) 167
168
169 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 166.750 kb on + strand, within HMPREF1058_RS01275 at 166.751 kb on - strand, within HMPREF1058_RS01275 at 166.756 kb on - strand, within HMPREF1058_RS01275 at 166.779 kb on - strand, within HMPREF1058_RS01275 at 166.813 kb on + strand, within HMPREF1058_RS01275 at 166.813 kb on + strand, within HMPREF1058_RS01275 at 166.821 kb on + strand, within HMPREF1058_RS01275 at 166.927 kb on + strand, within HMPREF1058_RS01275 at 166.928 kb on - strand at 166.930 kb on + strand, within HMPREF1058_RS01275 at 166.930 kb on + strand, within HMPREF1058_RS01275 at 166.933 kb on - strand, within HMPREF1058_RS01275 at 166.954 kb on + strand, within HMPREF1058_RS01275 at 167.075 kb on - strand at 167.131 kb on - strand at 167.173 kb on + strand at 167.174 kb on - strand at 167.175 kb on + strand at 167.196 kb on + strand, within HMPREF1058_RS01270 at 167.196 kb on + strand, within HMPREF1058_RS01270 at 167.200 kb on + strand, within HMPREF1058_RS01270 at 167.271 kb on + strand, within HMPREF1058_RS01270 at 167.272 kb on - strand, within HMPREF1058_RS01270 at 167.356 kb on - strand, within HMPREF1058_RS01270 at 167.387 kb on + strand, within HMPREF1058_RS01270 at 167.388 kb on - strand, within HMPREF1058_RS01270 at 167.394 kb on + strand, within HMPREF1058_RS01270 at 167.418 kb on + strand, within HMPREF1058_RS01270 at 167.418 kb on + strand, within HMPREF1058_RS01270 at 167.419 kb on - strand, within HMPREF1058_RS01270 at 167.419 kb on - strand, within HMPREF1058_RS01270 at 167.464 kb on - strand, within HMPREF1058_RS01270 at 167.464 kb on - strand, within HMPREF1058_RS01270 at 167.543 kb on + strand, within HMPREF1058_RS01270 at 167.544 kb on - strand, within HMPREF1058_RS01270 at 167.548 kb on - strand, within HMPREF1058_RS01270 at 167.552 kb on - strand, within HMPREF1058_RS01270 at 167.634 kb on - strand at 167.651 kb on + strand at 167.790 kb on + strand at 167.793 kb on - strand, within HMPREF1058_RS01265 at 167.832 kb on + strand, within HMPREF1058_RS01265 at 167.938 kb on + strand, within HMPREF1058_RS01265 at 167.939 kb on - strand, within HMPREF1058_RS01265 at 167.939 kb on - strand, within HMPREF1058_RS01265 at 167.948 kb on + strand, within HMPREF1058_RS01265 at 168.114 kb on + strand, within HMPREF1058_RS01265 at 168.117 kb on - strand, within HMPREF1058_RS01265 at 168.137 kb on - strand at 168.137 kb on - strand at 168.139 kb on - strand at 168.139 kb on - strand at 168.141 kb on - strand at 168.192 kb on - strand at 168.270 kb on + strand at 168.326 kb on - strand, within HMPREF1058_RS01260 at 168.357 kb on + strand, within HMPREF1058_RS01260 at 168.408 kb on - strand, within HMPREF1058_RS01260 at 168.408 kb on - strand, within HMPREF1058_RS01260 at 168.408 kb on - strand, within HMPREF1058_RS01260 at 168.411 kb on - strand, within HMPREF1058_RS01260 at 168.411 kb on - strand, within HMPREF1058_RS01260 at 168.528 kb on + strand, within HMPREF1058_RS01260 at 168.709 kb on + strand, within HMPREF1058_RS01260 at 168.723 kb on + strand, within HMPREF1058_RS01260 at 168.723 kb on + strand, within HMPREF1058_RS01260 at 168.737 kb on + strand, within HMPREF1058_RS01260 at 168.738 kb on - strand, within HMPREF1058_RS01260 at 168.738 kb on - strand, within HMPREF1058_RS01260 at 168.738 kb on - strand, within HMPREF1058_RS01260 at 168.779 kb on - strand, within HMPREF1058_RS01260 at 168.785 kb on - strand, within HMPREF1058_RS01260 at 168.904 kb on + strand, within HMPREF1058_RS01260 at 168.927 kb on + strand, within HMPREF1058_RS01260 at 168.928 kb on - strand, within HMPREF1058_RS01260 at 168.928 kb on - strand, within HMPREF1058_RS01260 at 168.928 kb on - strand, within HMPREF1058_RS01260 at 168.938 kb on - strand, within HMPREF1058_RS01260 at 168.980 kb on + strand, within HMPREF1058_RS01260 at 168.981 kb on - strand, within HMPREF1058_RS01260 at 168.981 kb on - strand, within HMPREF1058_RS01260 at 168.993 kb on + strand, within HMPREF1058_RS01260 at 168.997 kb on - strand, within HMPREF1058_RS01260 at 169.003 kb on + strand, within HMPREF1058_RS01260 at 169.046 kb on - strand, within HMPREF1058_RS01260 at 169.078 kb on + strand, within HMPREF1058_RS01260 at 169.079 kb on - strand, within HMPREF1058_RS01260 at 169.151 kb on - strand, within HMPREF1058_RS01260
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 166,750 + HMPREF1058_RS01275 0.64 -0.6 166,751 - HMPREF1058_RS01275 0.64 -0.7 166,756 - HMPREF1058_RS01275 0.64 +0.7 166,779 - HMPREF1058_RS01275 0.66 -0.6 166,813 + HMPREF1058_RS01275 0.70 -0.3 166,813 + HMPREF1058_RS01275 0.70 -0.9 166,821 + HMPREF1058_RS01275 0.70 +0.5 166,927 + HMPREF1058_RS01275 0.81 -2.8 166,928 - -0.3 166,930 + HMPREF1058_RS01275 0.81 -0.3 166,930 + HMPREF1058_RS01275 0.81 -2.2 166,933 - HMPREF1058_RS01275 0.81 -1.1 166,954 + HMPREF1058_RS01275 0.83 -0.9 167,075 - -0.6 167,131 - -0.1 167,173 + -2.4 167,174 - -1.1 167,175 + -1.1 167,196 + HMPREF1058_RS01270 0.12 -1.0 167,196 + HMPREF1058_RS01270 0.12 -1.2 167,200 + HMPREF1058_RS01270 0.13 -1.5 167,271 + HMPREF1058_RS01270 0.26 -0.3 167,272 - HMPREF1058_RS01270 0.27 -0.5 167,356 - HMPREF1058_RS01270 0.43 -1.3 167,387 + HMPREF1058_RS01270 0.49 -2.0 167,388 - HMPREF1058_RS01270 0.49 -1.5 167,394 + HMPREF1058_RS01270 0.51 -1.3 167,418 + HMPREF1058_RS01270 0.55 -1.3 167,418 + HMPREF1058_RS01270 0.55 -2.5 167,419 - HMPREF1058_RS01270 0.55 -1.0 167,419 - HMPREF1058_RS01270 0.55 -1.9 167,464 - HMPREF1058_RS01270 0.64 -0.4 167,464 - HMPREF1058_RS01270 0.64 +2.1 167,543 + HMPREF1058_RS01270 0.80 -0.3 167,544 - HMPREF1058_RS01270 0.80 +0.2 167,548 - HMPREF1058_RS01270 0.81 -2.0 167,552 - HMPREF1058_RS01270 0.82 -1.1 167,634 - -1.0 167,651 + -1.9 167,790 + +0.1 167,793 - HMPREF1058_RS01265 0.27 -1.1 167,832 + HMPREF1058_RS01265 0.35 -0.3 167,938 + HMPREF1058_RS01265 0.55 -0.6 167,939 - HMPREF1058_RS01265 0.55 -1.8 167,939 - HMPREF1058_RS01265 0.55 -0.6 167,948 + HMPREF1058_RS01265 0.57 -0.3 168,114 + HMPREF1058_RS01265 0.88 -0.9 168,117 - HMPREF1058_RS01265 0.89 -1.5 168,137 - -2.6 168,137 - +0.7 168,139 - -2.6 168,139 - -2.2 168,141 - -1.1 168,192 - +0.8 168,270 + -1.9 168,326 - HMPREF1058_RS01260 0.12 -0.3 168,357 + HMPREF1058_RS01260 0.15 +0.1 168,408 - HMPREF1058_RS01260 0.19 +0.1 168,408 - HMPREF1058_RS01260 0.19 -0.8 168,408 - HMPREF1058_RS01260 0.19 -1.6 168,411 - HMPREF1058_RS01260 0.20 -0.7 168,411 - HMPREF1058_RS01260 0.20 +1.9 168,528 + HMPREF1058_RS01260 0.30 -2.0 168,709 + HMPREF1058_RS01260 0.46 -2.6 168,723 + HMPREF1058_RS01260 0.47 -0.3 168,723 + HMPREF1058_RS01260 0.47 -3.7 168,737 + HMPREF1058_RS01260 0.48 -0.9 168,738 - HMPREF1058_RS01260 0.48 +0.9 168,738 - HMPREF1058_RS01260 0.48 +0.3 168,738 - HMPREF1058_RS01260 0.48 +0.1 168,779 - HMPREF1058_RS01260 0.52 -0.3 168,785 - HMPREF1058_RS01260 0.53 +0.9 168,904 + HMPREF1058_RS01260 0.63 -1.5 168,927 + HMPREF1058_RS01260 0.65 -1.3 168,928 - HMPREF1058_RS01260 0.65 -0.1 168,928 - HMPREF1058_RS01260 0.65 +0.2 168,928 - HMPREF1058_RS01260 0.65 +1.0 168,938 - HMPREF1058_RS01260 0.66 -0.2 168,980 + HMPREF1058_RS01260 0.70 -1.6 168,981 - HMPREF1058_RS01260 0.70 -0.4 168,981 - HMPREF1058_RS01260 0.70 -0.1 168,993 + HMPREF1058_RS01260 0.71 -0.3 168,997 - HMPREF1058_RS01260 0.71 +0.9 169,003 + HMPREF1058_RS01260 0.72 -0.9 169,046 - HMPREF1058_RS01260 0.76 +0.9 169,078 + HMPREF1058_RS01260 0.79 -2.0 169,079 - HMPREF1058_RS01260 0.79 +2.7 169,151 - HMPREF1058_RS01260 0.85 -0.3
Or see this region's nucleotide sequence