Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS16540 and HMPREF1058_RS16535 are separated by 17 nucleotides HMPREF1058_RS16535 and HMPREF1058_RS16530 are separated by 5 nucleotides HMPREF1058_RS16530 and HMPREF1058_RS16525 overlap by 1 nucleotides HMPREF1058_RS16525 and HMPREF1058_RS16520 are separated by 2 nucleotides HMPREF1058_RS16520 and HMPREF1058_RS16515 are separated by 45 nucleotides
HMPREF1058_RS16540: HMPREF1058_RS16540 - septum formation protein Maf, at 650,009 to 650,590
_RS16540
HMPREF1058_RS16535: HMPREF1058_RS16535 - HAD-IIIA family hydrolase, at 650,608 to 651,126
_RS16535
HMPREF1058_RS16530: HMPREF1058_RS16530 - Rossmann-like and DUF2520 domain-containing protein, at 651,132 to 651,938
_RS16530
HMPREF1058_RS16525: HMPREF1058_RS16525 - hypothetical protein, at 651,938 to 652,264
_RS16525
HMPREF1058_RS16520: HMPREF1058_RS16520 - nitroreductase family protein, at 652,267 to 652,803
_RS16520
HMPREF1058_RS16515: HMPREF1058_RS16515 - GNAT family N-acetyltransferase, at 652,849 to 653,871
_RS16515
Position (kb) 651
652 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 650.159 kb on - strand, within HMPREF1058_RS16540 at 650.160 kb on + strand, within HMPREF1058_RS16540 at 650.198 kb on + strand, within HMPREF1058_RS16540 at 650.351 kb on + strand, within HMPREF1058_RS16540 at 650.351 kb on + strand, within HMPREF1058_RS16540 at 650.351 kb on + strand, within HMPREF1058_RS16540 at 650.351 kb on + strand, within HMPREF1058_RS16540 at 650.352 kb on - strand, within HMPREF1058_RS16540 at 650.426 kb on + strand, within HMPREF1058_RS16540 at 650.426 kb on + strand, within HMPREF1058_RS16540 at 650.427 kb on - strand, within HMPREF1058_RS16540 at 650.427 kb on - strand, within HMPREF1058_RS16540 at 650.430 kb on + strand, within HMPREF1058_RS16540 at 650.430 kb on + strand, within HMPREF1058_RS16540 at 650.458 kb on + strand, within HMPREF1058_RS16540 at 650.513 kb on + strand, within HMPREF1058_RS16540 at 650.514 kb on - strand, within HMPREF1058_RS16540 at 651.134 kb on - strand at 651.400 kb on - strand, within HMPREF1058_RS16530 at 651.407 kb on - strand, within HMPREF1058_RS16530 at 651.567 kb on - strand, within HMPREF1058_RS16530 at 651.606 kb on - strand, within HMPREF1058_RS16530 at 651.646 kb on - strand, within HMPREF1058_RS16530 at 651.660 kb on - strand, within HMPREF1058_RS16530 at 651.672 kb on - strand, within HMPREF1058_RS16530 at 651.748 kb on - strand, within HMPREF1058_RS16530 at 651.753 kb on - strand, within HMPREF1058_RS16530 at 651.755 kb on - strand, within HMPREF1058_RS16530 at 651.755 kb on - strand, within HMPREF1058_RS16530 at 651.775 kb on - strand, within HMPREF1058_RS16530 at 651.853 kb on - strand, within HMPREF1058_RS16530 at 652.026 kb on - strand, within HMPREF1058_RS16525 at 652.056 kb on - strand, within HMPREF1058_RS16525 at 652.056 kb on - strand, within HMPREF1058_RS16525 at 652.120 kb on - strand, within HMPREF1058_RS16525 at 652.236 kb on + strand at 652.237 kb on - strand at 652.237 kb on - strand at 652.241 kb on - strand at 652.363 kb on - strand, within HMPREF1058_RS16520 at 652.405 kb on - strand, within HMPREF1058_RS16520 at 652.405 kb on - strand at 652.571 kb on - strand, within HMPREF1058_RS16520 at 652.579 kb on - strand, within HMPREF1058_RS16520 at 652.678 kb on - strand, within HMPREF1058_RS16520 at 652.724 kb on - strand, within HMPREF1058_RS16520 at 652.807 kb on - strand at 652.807 kb on - strand at 652.807 kb on - strand at 652.807 kb on - strand at 652.840 kb on - strand at 652.846 kb on - strand at 652.886 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 650,159 - HMPREF1058_RS16540 0.26 +1.4 650,160 + HMPREF1058_RS16540 0.26 +0.4 650,198 + HMPREF1058_RS16540 0.32 +0.2 650,351 + HMPREF1058_RS16540 0.59 +0.5 650,351 + HMPREF1058_RS16540 0.59 +0.9 650,351 + HMPREF1058_RS16540 0.59 -1.0 650,351 + HMPREF1058_RS16540 0.59 -0.6 650,352 - HMPREF1058_RS16540 0.59 +1.4 650,426 + HMPREF1058_RS16540 0.72 -0.3 650,426 + HMPREF1058_RS16540 0.72 -0.2 650,427 - HMPREF1058_RS16540 0.72 +0.1 650,427 - HMPREF1058_RS16540 0.72 +0.5 650,430 + HMPREF1058_RS16540 0.72 -0.4 650,430 + HMPREF1058_RS16540 0.72 -0.6 650,458 + HMPREF1058_RS16540 0.77 -0.5 650,513 + HMPREF1058_RS16540 0.87 -1.4 650,514 - HMPREF1058_RS16540 0.87 -0.4 651,134 - +0.3 651,400 - HMPREF1058_RS16530 0.33 -2.3 651,407 - HMPREF1058_RS16530 0.34 -0.6 651,567 - HMPREF1058_RS16530 0.54 -4.2 651,606 - HMPREF1058_RS16530 0.59 -1.6 651,646 - HMPREF1058_RS16530 0.64 -1.4 651,660 - HMPREF1058_RS16530 0.65 -3.3 651,672 - HMPREF1058_RS16530 0.67 -1.2 651,748 - HMPREF1058_RS16530 0.76 -2.3 651,753 - HMPREF1058_RS16530 0.77 +1.4 651,755 - HMPREF1058_RS16530 0.77 -0.6 651,755 - HMPREF1058_RS16530 0.77 -1.5 651,775 - HMPREF1058_RS16530 0.80 -1.6 651,853 - HMPREF1058_RS16530 0.89 -1.5 652,026 - HMPREF1058_RS16525 0.27 +0.1 652,056 - HMPREF1058_RS16525 0.36 -1.6 652,056 - HMPREF1058_RS16525 0.36 +0.7 652,120 - HMPREF1058_RS16525 0.56 -1.1 652,236 + +0.4 652,237 - +0.3 652,237 - -0.5 652,241 - -0.5 652,363 - HMPREF1058_RS16520 0.18 +1.2 652,405 - HMPREF1058_RS16520 0.26 -0.4 652,405 - -0.6 652,571 - HMPREF1058_RS16520 0.57 +0.4 652,579 - HMPREF1058_RS16520 0.58 -0.7 652,678 - HMPREF1058_RS16520 0.77 +0.3 652,724 - HMPREF1058_RS16520 0.85 +0.9 652,807 - +0.1 652,807 - -1.1 652,807 - -0.1 652,807 - +0.9 652,840 - +1.2 652,846 - -0.4 652,886 + -0.2
Or see this region's nucleotide sequence