Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS08075 and HMPREF1058_RS08070 are separated by 177 nucleotides HMPREF1058_RS08070 and HMPREF1058_RS08065 are separated by 8 nucleotides HMPREF1058_RS08065 and HMPREF1058_RS08060 are separated by 51 nucleotides
HMPREF1058_RS08075: HMPREF1058_RS08075 - hypothetical protein, at 59,954 to 60,727
_RS08075
HMPREF1058_RS08070: HMPREF1058_RS08070 - alpha-L-fucosidase, at 60,905 to 62,944
_RS08070
HMPREF1058_RS08065: HMPREF1058_RS08065 - tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA, at 62,953 to 63,855
_RS08065
HMPREF1058_RS08060: HMPREF1058_RS08060 - hypothetical protein, at 63,907 to 64,470
_RS08060
Position (kb) 60
61
62
63 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 59.914 kb on + strand at 59.914 kb on + strand at 59.914 kb on + strand at 59.916 kb on + strand at 59.923 kb on - strand at 59.936 kb on + strand at 60.068 kb on + strand, within HMPREF1058_RS08075 at 60.142 kb on + strand, within HMPREF1058_RS08075 at 60.143 kb on - strand, within HMPREF1058_RS08075 at 60.144 kb on + strand, within HMPREF1058_RS08075 at 60.164 kb on - strand, within HMPREF1058_RS08075 at 60.248 kb on - strand, within HMPREF1058_RS08075 at 60.248 kb on - strand, within HMPREF1058_RS08075 at 60.347 kb on - strand, within HMPREF1058_RS08075 at 60.430 kb on + strand, within HMPREF1058_RS08075 at 60.430 kb on + strand, within HMPREF1058_RS08075 at 60.499 kb on - strand, within HMPREF1058_RS08075 at 60.499 kb on - strand, within HMPREF1058_RS08075 at 60.678 kb on + strand at 60.678 kb on + strand at 60.682 kb on - strand at 60.744 kb on - strand at 60.767 kb on - strand at 60.795 kb on - strand at 60.798 kb on - strand at 60.827 kb on + strand at 60.829 kb on + strand at 60.877 kb on + strand at 60.890 kb on - strand at 61.036 kb on + strand at 61.232 kb on + strand, within HMPREF1058_RS08070 at 61.232 kb on + strand, within HMPREF1058_RS08070 at 61.232 kb on + strand, within HMPREF1058_RS08070 at 61.246 kb on + strand, within HMPREF1058_RS08070 at 61.464 kb on - strand, within HMPREF1058_RS08070 at 61.514 kb on + strand, within HMPREF1058_RS08070 at 61.527 kb on - strand, within HMPREF1058_RS08070 at 61.553 kb on - strand, within HMPREF1058_RS08070 at 61.554 kb on + strand, within HMPREF1058_RS08070 at 61.555 kb on - strand, within HMPREF1058_RS08070 at 61.555 kb on - strand, within HMPREF1058_RS08070 at 61.603 kb on - strand, within HMPREF1058_RS08070 at 61.612 kb on + strand, within HMPREF1058_RS08070 at 61.651 kb on + strand, within HMPREF1058_RS08070 at 61.651 kb on + strand, within HMPREF1058_RS08070 at 61.790 kb on - strand, within HMPREF1058_RS08070 at 61.837 kb on + strand, within HMPREF1058_RS08070 at 61.945 kb on - strand, within HMPREF1058_RS08070 at 62.206 kb on - strand, within HMPREF1058_RS08070 at 62.262 kb on - strand, within HMPREF1058_RS08070 at 62.266 kb on + strand, within HMPREF1058_RS08070 at 62.446 kb on + strand, within HMPREF1058_RS08070 at 62.475 kb on - strand, within HMPREF1058_RS08070 at 62.537 kb on + strand, within HMPREF1058_RS08070 at 62.575 kb on + strand, within HMPREF1058_RS08070 at 62.907 kb on - strand at 62.931 kb on - strand at 62.931 kb on - strand at 62.934 kb on - strand at 62.973 kb on + strand at 62.974 kb on - strand at 63.123 kb on - strand, within HMPREF1058_RS08065 at 63.140 kb on + strand, within HMPREF1058_RS08065 at 63.181 kb on + strand, within HMPREF1058_RS08065 at 63.182 kb on - strand, within HMPREF1058_RS08065 at 63.182 kb on - strand, within HMPREF1058_RS08065 at 63.182 kb on - strand, within HMPREF1058_RS08065 at 63.249 kb on - strand, within HMPREF1058_RS08065 at 63.350 kb on + strand, within HMPREF1058_RS08065 at 63.350 kb on + strand, within HMPREF1058_RS08065 at 63.350 kb on + strand, within HMPREF1058_RS08065 at 63.356 kb on - strand, within HMPREF1058_RS08065 at 63.370 kb on + strand, within HMPREF1058_RS08065 at 63.370 kb on + strand, within HMPREF1058_RS08065 at 63.371 kb on - strand, within HMPREF1058_RS08065 at 63.520 kb on + strand, within HMPREF1058_RS08065 at 63.541 kb on + strand, within HMPREF1058_RS08065 at 63.541 kb on + strand, within HMPREF1058_RS08065 at 63.541 kb on + strand, within HMPREF1058_RS08065 at 63.542 kb on - strand, within HMPREF1058_RS08065 at 63.542 kb on - strand, within HMPREF1058_RS08065 at 63.542 kb on - strand, within HMPREF1058_RS08065 at 63.543 kb on + strand, within HMPREF1058_RS08065 at 63.545 kb on + strand, within HMPREF1058_RS08065 at 63.545 kb on + strand, within HMPREF1058_RS08065 at 63.546 kb on - strand, within HMPREF1058_RS08065 at 63.546 kb on - strand, within HMPREF1058_RS08065 at 63.546 kb on - strand, within HMPREF1058_RS08065 at 63.546 kb on - strand, within HMPREF1058_RS08065 at 63.568 kb on + strand, within HMPREF1058_RS08065 at 63.571 kb on + strand, within HMPREF1058_RS08065 at 63.572 kb on - strand, within HMPREF1058_RS08065 at 63.613 kb on + strand, within HMPREF1058_RS08065 at 63.626 kb on + strand, within HMPREF1058_RS08065 at 63.674 kb on + strand, within HMPREF1058_RS08065 at 63.722 kb on - strand, within HMPREF1058_RS08065 at 63.799 kb on + strand at 63.814 kb on + strand at 63.815 kb on - strand at 63.887 kb on - strand at 63.908 kb on + strand at 63.927 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 59,914 + -0.1 59,914 + -0.4 59,914 + +1.0 59,916 + +0.4 59,923 - +0.6 59,936 + +0.3 60,068 + HMPREF1058_RS08075 0.15 +0.5 60,142 + HMPREF1058_RS08075 0.24 +0.4 60,143 - HMPREF1058_RS08075 0.24 +1.8 60,144 + HMPREF1058_RS08075 0.25 +1.0 60,164 - HMPREF1058_RS08075 0.27 -1.0 60,248 - HMPREF1058_RS08075 0.38 +1.7 60,248 - HMPREF1058_RS08075 0.38 +1.2 60,347 - HMPREF1058_RS08075 0.51 +0.7 60,430 + HMPREF1058_RS08075 0.61 +0.1 60,430 + HMPREF1058_RS08075 0.61 +0.5 60,499 - HMPREF1058_RS08075 0.70 +0.7 60,499 - HMPREF1058_RS08075 0.70 +1.9 60,678 + -0.3 60,678 + +0.5 60,682 - +0.6 60,744 - +0.4 60,767 - -1.8 60,795 - +1.4 60,798 - +0.2 60,827 + +0.4 60,829 + -0.1 60,877 + -1.2 60,890 - +0.4 61,036 + +0.0 61,232 + HMPREF1058_RS08070 0.16 +0.8 61,232 + HMPREF1058_RS08070 0.16 -0.7 61,232 + HMPREF1058_RS08070 0.16 +0.9 61,246 + HMPREF1058_RS08070 0.17 +0.6 61,464 - HMPREF1058_RS08070 0.27 +0.4 61,514 + HMPREF1058_RS08070 0.30 -0.3 61,527 - HMPREF1058_RS08070 0.30 +0.6 61,553 - HMPREF1058_RS08070 0.32 +0.8 61,554 + HMPREF1058_RS08070 0.32 -0.2 61,555 - HMPREF1058_RS08070 0.32 +0.6 61,555 - HMPREF1058_RS08070 0.32 +1.0 61,603 - HMPREF1058_RS08070 0.34 +1.3 61,612 + HMPREF1058_RS08070 0.35 -0.9 61,651 + HMPREF1058_RS08070 0.37 -0.2 61,651 + HMPREF1058_RS08070 0.37 -1.6 61,790 - HMPREF1058_RS08070 0.43 -0.1 61,837 + HMPREF1058_RS08070 0.46 +0.1 61,945 - HMPREF1058_RS08070 0.51 +1.4 62,206 - HMPREF1058_RS08070 0.64 -0.8 62,262 - HMPREF1058_RS08070 0.67 -0.7 62,266 + HMPREF1058_RS08070 0.67 +0.6 62,446 + HMPREF1058_RS08070 0.76 +2.5 62,475 - HMPREF1058_RS08070 0.77 -0.9 62,537 + HMPREF1058_RS08070 0.80 -0.1 62,575 + HMPREF1058_RS08070 0.82 -1.2 62,907 - -0.5 62,931 - +0.3 62,931 - +0.4 62,934 - +0.8 62,973 + +3.9 62,974 - +0.3 63,123 - HMPREF1058_RS08065 0.19 -0.2 63,140 + HMPREF1058_RS08065 0.21 -1.5 63,181 + HMPREF1058_RS08065 0.25 +2.2 63,182 - HMPREF1058_RS08065 0.25 -2.1 63,182 - HMPREF1058_RS08065 0.25 +2.0 63,182 - HMPREF1058_RS08065 0.25 -2.3 63,249 - HMPREF1058_RS08065 0.33 -0.9 63,350 + HMPREF1058_RS08065 0.44 -1.0 63,350 + HMPREF1058_RS08065 0.44 -0.1 63,350 + HMPREF1058_RS08065 0.44 -1.8 63,356 - HMPREF1058_RS08065 0.45 -2.9 63,370 + HMPREF1058_RS08065 0.46 -0.2 63,370 + HMPREF1058_RS08065 0.46 -2.6 63,371 - HMPREF1058_RS08065 0.46 -1.0 63,520 + HMPREF1058_RS08065 0.63 -2.5 63,541 + HMPREF1058_RS08065 0.65 -1.5 63,541 + HMPREF1058_RS08065 0.65 -1.6 63,541 + HMPREF1058_RS08065 0.65 -2.3 63,542 - HMPREF1058_RS08065 0.65 -2.8 63,542 - HMPREF1058_RS08065 0.65 -3.0 63,542 - HMPREF1058_RS08065 0.65 -1.8 63,543 + HMPREF1058_RS08065 0.65 -1.8 63,545 + HMPREF1058_RS08065 0.66 -3.3 63,545 + HMPREF1058_RS08065 0.66 -2.2 63,546 - HMPREF1058_RS08065 0.66 -2.2 63,546 - HMPREF1058_RS08065 0.66 -1.6 63,546 - HMPREF1058_RS08065 0.66 -0.2 63,546 - HMPREF1058_RS08065 0.66 -0.5 63,568 + HMPREF1058_RS08065 0.68 -2.3 63,571 + HMPREF1058_RS08065 0.68 -1.1 63,572 - HMPREF1058_RS08065 0.69 -0.7 63,613 + HMPREF1058_RS08065 0.73 -2.6 63,626 + HMPREF1058_RS08065 0.75 -0.9 63,674 + HMPREF1058_RS08065 0.80 -1.5 63,722 - HMPREF1058_RS08065 0.85 -1.3 63,799 + -1.0 63,814 + -3.3 63,815 - -1.6 63,887 - +0.1 63,908 + -1.0 63,927 - +0.7
Or see this region's nucleotide sequence