Experiment: Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1058_RS04605 and HMPREF1058_RS04600 are separated by 109 nucleotides HMPREF1058_RS04600 and HMPREF1058_RS04595 are separated by 39 nucleotides HMPREF1058_RS04595 and HMPREF1058_RS04590 overlap by 23 nucleotides HMPREF1058_RS04590 and HMPREF1058_RS04585 are separated by 258 nucleotides
HMPREF1058_RS04605: HMPREF1058_RS04605 - HNH endonuclease, at 2,359 to 2,856
_RS04605
HMPREF1058_RS04600: HMPREF1058_RS04600 - hypothetical protein, at 2,966 to 3,409
_RS04600
HMPREF1058_RS04595: HMPREF1058_RS04595 - VRR-NUC domain-containing protein, at 3,449 to 3,856
_RS04595
HMPREF1058_RS04590: HMPREF1058_RS04590 - DUF4494 family protein, at 3,834 to 4,469
_RS04590
HMPREF1058_RS04585: HMPREF1058_RS04585 - hypothetical protein, at 4,728 to 5,516
_RS04585
Position (kb) 3
4
5 Strain fitness (log2 ratio) -2
-1
0
1 at 2.887 kb on + strand at 2.887 kb on + strand at 2.891 kb on + strand at 2.932 kb on + strand at 2.960 kb on + strand at 3.192 kb on + strand, within HMPREF1058_RS04600 at 3.317 kb on + strand, within HMPREF1058_RS04600 at 3.401 kb on + strand at 3.434 kb on + strand at 3.933 kb on + strand, within HMPREF1058_RS04590 at 4.048 kb on + strand, within HMPREF1058_RS04590 at 4.050 kb on + strand, within HMPREF1058_RS04590 at 4.050 kb on + strand, within HMPREF1058_RS04590 at 4.050 kb on + strand, within HMPREF1058_RS04590 at 4.460 kb on + strand at 4.511 kb on + strand at 5.034 kb on + strand, within HMPREF1058_RS04585 at 5.130 kb on + strand, within HMPREF1058_RS04585 at 5.168 kb on + strand, within HMPREF1058_RS04585 at 5.237 kb on + strand, within HMPREF1058_RS04585 at 5.237 kb on + strand, within HMPREF1058_RS04585 at 5.249 kb on + strand, within HMPREF1058_RS04585 at 5.413 kb on + strand, within HMPREF1058_RS04585
Per-strain Table
Position Strand Gene LocusTag Fraction Red Arabinan from sugar-beet; filtered 2.5 mg/ml (C) remove 2,887 + -0.3 2,887 + -0.2 2,891 + +0.6 2,932 + -0.8 2,960 + -0.0 3,192 + HMPREF1058_RS04600 0.51 +1.4 3,317 + HMPREF1058_RS04600 0.79 +0.7 3,401 + +0.3 3,434 + -1.6 3,933 + HMPREF1058_RS04590 0.16 +0.3 4,048 + HMPREF1058_RS04590 0.34 -0.3 4,050 + HMPREF1058_RS04590 0.34 -0.9 4,050 + HMPREF1058_RS04590 0.34 -1.4 4,050 + HMPREF1058_RS04590 0.34 +0.7 4,460 + -1.8 4,511 + -0.5 5,034 + HMPREF1058_RS04585 0.39 +0.9 5,130 + HMPREF1058_RS04585 0.51 +0.3 5,168 + HMPREF1058_RS04585 0.56 +0.5 5,237 + HMPREF1058_RS04585 0.65 -0.3 5,237 + HMPREF1058_RS04585 0.65 -1.3 5,249 + HMPREF1058_RS04585 0.66 -0.1 5,413 + HMPREF1058_RS04585 0.87 -1.3
Or see this region's nucleotide sequence