Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5216.1

Experiment: Citric Acid 10mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5215.1 and Xcc-8004.5216.1 overlap by 4 nucleotidesXcc-8004.5216.1 and Xcc-8004.5217.1 are separated by 11 nucleotides Xcc-8004.5215.1: Xcc-8004.5215.1 - Alpha-glucuronidase (EC 3.2.1.139), at 4,949,617 to 4,951,836 Xcc-8004.5215.1 Xcc-8004.5216.1: Xcc-8004.5216.1 - Sialic acid-specific 9-O-acetylesterase, at 4,951,833 to 4,953,797 Xcc-8004.5216.1 Xcc-8004.5217.1: Xcc-8004.5217.1 - Starvation sensing protein RspA, at 4,953,809 to 4,955,068 Xcc-8004.5217.1 Position (kb) 4951 4952 4953 4954Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4950.895 kb on + strand, within Xcc-8004.5215.1at 4950.896 kb on - strand, within Xcc-8004.5215.1at 4950.896 kb on - strand, within Xcc-8004.5215.1at 4950.896 kb on - strand, within Xcc-8004.5215.1at 4950.896 kb on - strand, within Xcc-8004.5215.1at 4950.896 kb on - strand, within Xcc-8004.5215.1at 4950.899 kb on + strand, within Xcc-8004.5215.1at 4950.899 kb on + strand, within Xcc-8004.5215.1at 4950.899 kb on + strand, within Xcc-8004.5215.1at 4950.899 kb on + strand, within Xcc-8004.5215.1at 4950.900 kb on - strand, within Xcc-8004.5215.1at 4950.900 kb on - strand, within Xcc-8004.5215.1at 4950.922 kb on + strand, within Xcc-8004.5215.1at 4950.961 kb on - strand, within Xcc-8004.5215.1at 4950.961 kb on - strand, within Xcc-8004.5215.1at 4950.964 kb on + strand, within Xcc-8004.5215.1at 4950.964 kb on + strand, within Xcc-8004.5215.1at 4950.964 kb on + strand, within Xcc-8004.5215.1at 4950.965 kb on - strand, within Xcc-8004.5215.1at 4950.965 kb on - strand, within Xcc-8004.5215.1at 4951.117 kb on + strand, within Xcc-8004.5215.1at 4951.117 kb on + strand, within Xcc-8004.5215.1at 4951.151 kb on + strand, within Xcc-8004.5215.1at 4951.152 kb on - strand, within Xcc-8004.5215.1at 4951.264 kb on + strand, within Xcc-8004.5215.1at 4951.264 kb on + strand, within Xcc-8004.5215.1at 4951.264 kb on + strand, within Xcc-8004.5215.1at 4951.265 kb on - strand, within Xcc-8004.5215.1at 4951.265 kb on - strand, within Xcc-8004.5215.1at 4951.265 kb on - strand, within Xcc-8004.5215.1at 4951.312 kb on + strand, within Xcc-8004.5215.1at 4951.312 kb on + strand, within Xcc-8004.5215.1at 4951.366 kb on + strand, within Xcc-8004.5215.1at 4951.366 kb on + strand, within Xcc-8004.5215.1at 4951.367 kb on - strand, within Xcc-8004.5215.1at 4951.367 kb on - strand, within Xcc-8004.5215.1at 4951.367 kb on - strand, within Xcc-8004.5215.1at 4951.369 kb on + strand, within Xcc-8004.5215.1at 4951.370 kb on - strand, within Xcc-8004.5215.1at 4951.370 kb on - strand, within Xcc-8004.5215.1at 4951.439 kb on - strand, within Xcc-8004.5215.1at 4951.439 kb on - strand, within Xcc-8004.5215.1at 4951.493 kb on - strand, within Xcc-8004.5215.1at 4951.573 kb on + strand, within Xcc-8004.5215.1at 4951.574 kb on - strand, within Xcc-8004.5215.1at 4951.574 kb on - strand, within Xcc-8004.5215.1at 4951.723 kb on + strandat 4951.724 kb on - strandat 4951.789 kb on + strandat 4951.790 kb on - strandat 4951.790 kb on - strandat 4951.790 kb on - strandat 4951.790 kb on - strandat 4951.792 kb on + strandat 4951.792 kb on + strandat 4952.100 kb on + strand, within Xcc-8004.5216.1at 4952.101 kb on - strand, within Xcc-8004.5216.1at 4952.101 kb on - strand, within Xcc-8004.5216.1at 4952.376 kb on + strand, within Xcc-8004.5216.1at 4952.376 kb on + strand, within Xcc-8004.5216.1at 4952.377 kb on - strand, within Xcc-8004.5216.1at 4952.377 kb on - strand, within Xcc-8004.5216.1at 4952.377 kb on - strand, within Xcc-8004.5216.1at 4952.379 kb on + strand, within Xcc-8004.5216.1at 4952.379 kb on + strand, within Xcc-8004.5216.1at 4952.379 kb on + strand, within Xcc-8004.5216.1at 4952.380 kb on - strand, within Xcc-8004.5216.1at 4952.836 kb on - strand, within Xcc-8004.5216.1at 4952.836 kb on - strand, within Xcc-8004.5216.1at 4952.925 kb on + strand, within Xcc-8004.5216.1at 4952.926 kb on - strand, within Xcc-8004.5216.1at 4952.926 kb on - strand, within Xcc-8004.5216.1at 4952.926 kb on - strand, within Xcc-8004.5216.1at 4952.942 kb on - strand, within Xcc-8004.5216.1at 4953.015 kb on + strand, within Xcc-8004.5216.1at 4953.090 kb on + strand, within Xcc-8004.5216.1at 4953.090 kb on + strand, within Xcc-8004.5216.1at 4953.091 kb on - strand, within Xcc-8004.5216.1at 4953.144 kb on + strand, within Xcc-8004.5216.1at 4953.144 kb on + strand, within Xcc-8004.5216.1at 4953.181 kb on - strand, within Xcc-8004.5216.1at 4953.267 kb on + strand, within Xcc-8004.5216.1at 4953.267 kb on + strand, within Xcc-8004.5216.1at 4953.267 kb on + strand, within Xcc-8004.5216.1at 4953.267 kb on + strand, within Xcc-8004.5216.1at 4953.268 kb on - strand, within Xcc-8004.5216.1at 4953.268 kb on - strand, within Xcc-8004.5216.1at 4953.268 kb on - strand, within Xcc-8004.5216.1at 4953.391 kb on - strand, within Xcc-8004.5216.1at 4953.391 kb on - strand, within Xcc-8004.5216.1at 4953.459 kb on + strand, within Xcc-8004.5216.1at 4953.459 kb on + strand, within Xcc-8004.5216.1at 4953.459 kb on + strand, within Xcc-8004.5216.1at 4953.565 kb on - strand, within Xcc-8004.5216.1at 4953.565 kb on - strand, within Xcc-8004.5216.1at 4953.565 kb on - strand, within Xcc-8004.5216.1at 4953.699 kb on + strandat 4953.700 kb on - strandat 4953.700 kb on - strandat 4953.732 kb on + strandat 4953.732 kb on + strandat 4953.733 kb on - strandat 4953.733 kb on - strandat 4953.995 kb on + strand, within Xcc-8004.5217.1at 4954.046 kb on - strand, within Xcc-8004.5217.1at 4954.071 kb on - strand, within Xcc-8004.5217.1at 4954.083 kb on - strand, within Xcc-8004.5217.1at 4954.125 kb on + strand, within Xcc-8004.5217.1at 4954.125 kb on + strand, within Xcc-8004.5217.1at 4954.126 kb on - strand, within Xcc-8004.5217.1at 4954.126 kb on - strand, within Xcc-8004.5217.1at 4954.126 kb on - strand, within Xcc-8004.5217.1at 4954.126 kb on - strand, within Xcc-8004.5217.1at 4954.126 kb on - strand, within Xcc-8004.5217.1at 4954.176 kb on - strand, within Xcc-8004.5217.1at 4954.176 kb on - strand, within Xcc-8004.5217.1at 4954.176 kb on - strand, within Xcc-8004.5217.1at 4954.288 kb on + strand, within Xcc-8004.5217.1at 4954.334 kb on + strand, within Xcc-8004.5217.1at 4954.334 kb on + strand, within Xcc-8004.5217.1at 4954.475 kb on + strand, within Xcc-8004.5217.1at 4954.700 kb on + strand, within Xcc-8004.5217.1at 4954.701 kb on - strand, within Xcc-8004.5217.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid 10mM (C)
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4,950,895 + Xcc-8004.5215.1 0.58 +0.1
4,950,896 - Xcc-8004.5215.1 0.58 -0.4
4,950,896 - Xcc-8004.5215.1 0.58 -3.2
4,950,896 - Xcc-8004.5215.1 0.58 -1.4
4,950,896 - Xcc-8004.5215.1 0.58 +0.7
4,950,896 - Xcc-8004.5215.1 0.58 -2.1
4,950,899 + Xcc-8004.5215.1 0.58 -0.7
4,950,899 + Xcc-8004.5215.1 0.58 +0.1
4,950,899 + Xcc-8004.5215.1 0.58 -0.0
4,950,899 + Xcc-8004.5215.1 0.58 -2.8
4,950,900 - Xcc-8004.5215.1 0.58 +0.7
4,950,900 - Xcc-8004.5215.1 0.58 -0.3
4,950,922 + Xcc-8004.5215.1 0.59 -0.6
4,950,961 - Xcc-8004.5215.1 0.61 -2.1
4,950,961 - Xcc-8004.5215.1 0.61 +0.4
4,950,964 + Xcc-8004.5215.1 0.61 -0.7
4,950,964 + Xcc-8004.5215.1 0.61 -1.2
4,950,964 + Xcc-8004.5215.1 0.61 +0.7
4,950,965 - Xcc-8004.5215.1 0.61 -1.6
4,950,965 - Xcc-8004.5215.1 0.61 +1.3
4,951,117 + Xcc-8004.5215.1 0.68 -1.1
4,951,117 + Xcc-8004.5215.1 0.68 +0.8
4,951,151 + Xcc-8004.5215.1 0.69 +0.2
4,951,152 - Xcc-8004.5215.1 0.69 -2.9
4,951,264 + Xcc-8004.5215.1 0.74 -0.8
4,951,264 + Xcc-8004.5215.1 0.74 -0.9
4,951,264 + Xcc-8004.5215.1 0.74 -0.1
4,951,265 - Xcc-8004.5215.1 0.74 -0.0
4,951,265 - Xcc-8004.5215.1 0.74 +2.0
4,951,265 - Xcc-8004.5215.1 0.74 -0.8
4,951,312 + Xcc-8004.5215.1 0.76 -0.4
4,951,312 + Xcc-8004.5215.1 0.76 +0.8
4,951,366 + Xcc-8004.5215.1 0.79 -2.2
4,951,366 + Xcc-8004.5215.1 0.79 -0.8
4,951,367 - Xcc-8004.5215.1 0.79 -0.1
4,951,367 - Xcc-8004.5215.1 0.79 -1.0
4,951,367 - Xcc-8004.5215.1 0.79 -0.2
4,951,369 + Xcc-8004.5215.1 0.79 -0.8
4,951,370 - Xcc-8004.5215.1 0.79 +0.1
4,951,370 - Xcc-8004.5215.1 0.79 -0.3
4,951,439 - Xcc-8004.5215.1 0.82 -0.7
4,951,439 - Xcc-8004.5215.1 0.82 -2.4
4,951,493 - Xcc-8004.5215.1 0.85 +0.8
4,951,573 + Xcc-8004.5215.1 0.88 -1.0
4,951,574 - Xcc-8004.5215.1 0.88 +0.1
4,951,574 - Xcc-8004.5215.1 0.88 -1.1
4,951,723 + -2.9
4,951,724 - +1.1
4,951,789 + -1.3
4,951,790 - +1.0
4,951,790 - -2.8
4,951,790 - +0.4
4,951,790 - +0.1
4,951,792 + +0.1
4,951,792 + -0.3
4,952,100 + Xcc-8004.5216.1 0.14 -0.5
4,952,101 - Xcc-8004.5216.1 0.14 +1.1
4,952,101 - Xcc-8004.5216.1 0.14 +0.0
4,952,376 + Xcc-8004.5216.1 0.28 +0.9
4,952,376 + Xcc-8004.5216.1 0.28 -2.6
4,952,377 - Xcc-8004.5216.1 0.28 -1.4
4,952,377 - Xcc-8004.5216.1 0.28 -2.3
4,952,377 - Xcc-8004.5216.1 0.28 +1.7
4,952,379 + Xcc-8004.5216.1 0.28 -0.6
4,952,379 + Xcc-8004.5216.1 0.28 -0.5
4,952,379 + Xcc-8004.5216.1 0.28 -0.6
4,952,380 - Xcc-8004.5216.1 0.28 -1.2
4,952,836 - Xcc-8004.5216.1 0.51 +1.2
4,952,836 - Xcc-8004.5216.1 0.51 +1.2
4,952,925 + Xcc-8004.5216.1 0.56 +0.4
4,952,926 - Xcc-8004.5216.1 0.56 +0.7
4,952,926 - Xcc-8004.5216.1 0.56 -1.3
4,952,926 - Xcc-8004.5216.1 0.56 -1.9
4,952,942 - Xcc-8004.5216.1 0.56 -0.3
4,953,015 + Xcc-8004.5216.1 0.60 -0.6
4,953,090 + Xcc-8004.5216.1 0.64 -0.6
4,953,090 + Xcc-8004.5216.1 0.64 +1.8
4,953,091 - Xcc-8004.5216.1 0.64 -2.4
4,953,144 + Xcc-8004.5216.1 0.67 -2.3
4,953,144 + Xcc-8004.5216.1 0.67 -0.5
4,953,181 - Xcc-8004.5216.1 0.69 -0.9
4,953,267 + Xcc-8004.5216.1 0.73 +1.3
4,953,267 + Xcc-8004.5216.1 0.73 -1.0
4,953,267 + Xcc-8004.5216.1 0.73 -2.0
4,953,267 + Xcc-8004.5216.1 0.73 +1.0
4,953,268 - Xcc-8004.5216.1 0.73 -1.6
4,953,268 - Xcc-8004.5216.1 0.73 -1.8
4,953,268 - Xcc-8004.5216.1 0.73 +0.9
4,953,391 - Xcc-8004.5216.1 0.79 +0.4
4,953,391 - Xcc-8004.5216.1 0.79 -1.8
4,953,459 + Xcc-8004.5216.1 0.83 +1.2
4,953,459 + Xcc-8004.5216.1 0.83 +0.5
4,953,459 + Xcc-8004.5216.1 0.83 +0.0
4,953,565 - Xcc-8004.5216.1 0.88 -1.5
4,953,565 - Xcc-8004.5216.1 0.88 -1.4
4,953,565 - Xcc-8004.5216.1 0.88 -0.7
4,953,699 + -0.2
4,953,700 - -0.4
4,953,700 - +1.1
4,953,732 + -0.2
4,953,732 + -1.0
4,953,733 - +0.8
4,953,733 - -1.4
4,953,995 + Xcc-8004.5217.1 0.15 -1.1
4,954,046 - Xcc-8004.5217.1 0.19 -2.0
4,954,071 - Xcc-8004.5217.1 0.21 +0.8
4,954,083 - Xcc-8004.5217.1 0.22 -1.0
4,954,125 + Xcc-8004.5217.1 0.25 -0.7
4,954,125 + Xcc-8004.5217.1 0.25 +0.4
4,954,126 - Xcc-8004.5217.1 0.25 -1.8
4,954,126 - Xcc-8004.5217.1 0.25 +0.2
4,954,126 - Xcc-8004.5217.1 0.25 +0.0
4,954,126 - Xcc-8004.5217.1 0.25 +0.6
4,954,126 - Xcc-8004.5217.1 0.25 +1.8
4,954,176 - Xcc-8004.5217.1 0.29 +1.8
4,954,176 - Xcc-8004.5217.1 0.29 +0.6
4,954,176 - Xcc-8004.5217.1 0.29 +0.0
4,954,288 + Xcc-8004.5217.1 0.38 +0.4
4,954,334 + Xcc-8004.5217.1 0.42 +1.0
4,954,334 + Xcc-8004.5217.1 0.42 -2.2
4,954,475 + Xcc-8004.5217.1 0.53 +1.1
4,954,700 + Xcc-8004.5217.1 0.71 -1.5
4,954,701 - Xcc-8004.5217.1 0.71 -1.2

Or see this region's nucleotide sequence