Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5189.1

Experiment: Citric Acid 10mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5188.1 and Xcc-8004.5189.1 are separated by 182 nucleotidesXcc-8004.5189.1 and Xcc-8004.5190.1 overlap by 20 nucleotidesXcc-8004.5190.1 and Xcc-8004.5191.1 are separated by 10 nucleotides Xcc-8004.5188.1: Xcc-8004.5188.1 - Quino(hemo)protein alcohol dehydrogenase, PQQ-dependent (EC 1.1.99.8), at 4,921,621 to 4,923,348 Xcc-8004.5188.1 Xcc-8004.5189.1: Xcc-8004.5189.1 - FIG01212821: hypothetical protein, at 4,923,531 to 4,923,758 Xcc-8004.5189.1 Xcc-8004.5190.1: Xcc-8004.5190.1 - 3-dehydroquinate dehydratase, at 4,923,739 to 4,924,188 Xcc-8004.5190.1 Xcc-8004.5191.1: Xcc-8004.5191.1 - FIG01211386: hypothetical protein, at 4,924,199 to 4,924,621 Xcc-8004.5191.1 Position (kb) 4923 4924Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 4922.563 kb on + strand, within Xcc-8004.5188.1at 4922.563 kb on + strand, within Xcc-8004.5188.1at 4922.564 kb on - strand, within Xcc-8004.5188.1at 4922.564 kb on - strand, within Xcc-8004.5188.1at 4922.564 kb on - strand, within Xcc-8004.5188.1at 4922.564 kb on - strand, within Xcc-8004.5188.1at 4922.564 kb on - strand, within Xcc-8004.5188.1at 4922.564 kb on - strand, within Xcc-8004.5188.1at 4922.564 kb on - strand, within Xcc-8004.5188.1at 4922.632 kb on + strand, within Xcc-8004.5188.1at 4922.719 kb on + strand, within Xcc-8004.5188.1at 4922.741 kb on + strand, within Xcc-8004.5188.1at 4922.742 kb on - strand, within Xcc-8004.5188.1at 4922.812 kb on + strand, within Xcc-8004.5188.1at 4922.812 kb on + strand, within Xcc-8004.5188.1at 4922.813 kb on - strand, within Xcc-8004.5188.1at 4922.914 kb on + strand, within Xcc-8004.5188.1at 4922.915 kb on - strand, within Xcc-8004.5188.1at 4922.929 kb on + strand, within Xcc-8004.5188.1at 4922.929 kb on + strand, within Xcc-8004.5188.1at 4922.929 kb on + strand, within Xcc-8004.5188.1at 4922.929 kb on + strand, within Xcc-8004.5188.1at 4922.929 kb on + strand, within Xcc-8004.5188.1at 4922.930 kb on - strand, within Xcc-8004.5188.1at 4922.930 kb on - strand, within Xcc-8004.5188.1at 4922.930 kb on - strand, within Xcc-8004.5188.1at 4922.930 kb on - strand, within Xcc-8004.5188.1at 4922.930 kb on - strand, within Xcc-8004.5188.1at 4922.930 kb on - strand, within Xcc-8004.5188.1at 4922.930 kb on - strand, within Xcc-8004.5188.1at 4922.930 kb on - strand, within Xcc-8004.5188.1at 4922.962 kb on + strand, within Xcc-8004.5188.1at 4922.962 kb on + strand, within Xcc-8004.5188.1at 4922.962 kb on + strand, within Xcc-8004.5188.1at 4922.963 kb on - strand, within Xcc-8004.5188.1at 4922.963 kb on - strand, within Xcc-8004.5188.1at 4922.963 kb on - strand, within Xcc-8004.5188.1at 4922.963 kb on - strand, within Xcc-8004.5188.1at 4923.133 kb on + strand, within Xcc-8004.5188.1at 4923.133 kb on + strand, within Xcc-8004.5188.1at 4923.133 kb on + strand, within Xcc-8004.5188.1at 4923.134 kb on - strand, within Xcc-8004.5188.1at 4923.134 kb on - strand, within Xcc-8004.5188.1at 4923.199 kb on + strandat 4923.199 kb on + strandat 4923.199 kb on + strandat 4923.200 kb on - strandat 4923.200 kb on - strandat 4923.200 kb on - strandat 4923.200 kb on - strandat 4923.346 kb on + strandat 4923.346 kb on + strandat 4923.346 kb on + strandat 4923.346 kb on + strandat 4923.347 kb on - strandat 4923.347 kb on - strandat 4923.533 kb on - strandat 4923.533 kb on - strandat 4923.552 kb on + strandat 4923.552 kb on + strandat 4923.553 kb on - strandat 4923.553 kb on - strandat 4923.553 kb on - strandat 4923.553 kb on - strandat 4923.553 kb on - strandat 4923.700 kb on + strand, within Xcc-8004.5189.1at 4923.710 kb on - strand, within Xcc-8004.5189.1at 4923.721 kb on + strand, within Xcc-8004.5189.1at 4923.722 kb on - strand, within Xcc-8004.5189.1at 4923.815 kb on + strand, within Xcc-8004.5190.1at 4923.815 kb on + strand, within Xcc-8004.5190.1at 4923.831 kb on - strand, within Xcc-8004.5190.1at 4923.917 kb on + strand, within Xcc-8004.5190.1at 4923.917 kb on + strand, within Xcc-8004.5190.1at 4923.917 kb on + strand, within Xcc-8004.5190.1at 4923.917 kb on + strand, within Xcc-8004.5190.1at 4923.917 kb on + strand, within Xcc-8004.5190.1at 4923.917 kb on + strand, within Xcc-8004.5190.1at 4923.918 kb on - strand, within Xcc-8004.5190.1at 4923.918 kb on - strand, within Xcc-8004.5190.1at 4924.021 kb on + strand, within Xcc-8004.5190.1at 4924.022 kb on - strand, within Xcc-8004.5190.1at 4924.022 kb on - strand, within Xcc-8004.5190.1at 4924.269 kb on + strand, within Xcc-8004.5191.1at 4924.269 kb on + strand, within Xcc-8004.5191.1at 4924.270 kb on - strand, within Xcc-8004.5191.1at 4924.270 kb on - strand, within Xcc-8004.5191.1at 4924.298 kb on + strand, within Xcc-8004.5191.1at 4924.298 kb on + strand, within Xcc-8004.5191.1at 4924.374 kb on + strand, within Xcc-8004.5191.1at 4924.374 kb on + strand, within Xcc-8004.5191.1at 4924.375 kb on - strand, within Xcc-8004.5191.1at 4924.375 kb on - strand, within Xcc-8004.5191.1at 4924.394 kb on + strand, within Xcc-8004.5191.1at 4924.394 kb on + strand, within Xcc-8004.5191.1at 4924.395 kb on - strand, within Xcc-8004.5191.1at 4924.395 kb on - strand, within Xcc-8004.5191.1at 4924.395 kb on - strand, within Xcc-8004.5191.1at 4924.395 kb on - strand, within Xcc-8004.5191.1at 4924.395 kb on - strand, within Xcc-8004.5191.1at 4924.615 kb on + strandat 4924.616 kb on - strandat 4924.616 kb on - strandat 4924.616 kb on - strandat 4924.616 kb on - strandat 4924.662 kb on + strandat 4924.663 kb on - strandat 4924.663 kb on - strandat 4924.677 kb on + strandat 4924.677 kb on + strandat 4924.678 kb on - strandat 4924.686 kb on + strandat 4924.687 kb on - strandat 4924.733 kb on + strandat 4924.734 kb on - strandat 4924.738 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid 10mM (C)
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4,922,563 + Xcc-8004.5188.1 0.55 +1.0
4,922,563 + Xcc-8004.5188.1 0.55 -0.8
4,922,564 - Xcc-8004.5188.1 0.55 -2.0
4,922,564 - Xcc-8004.5188.1 0.55 -0.1
4,922,564 - Xcc-8004.5188.1 0.55 +0.2
4,922,564 - Xcc-8004.5188.1 0.55 +0.8
4,922,564 - Xcc-8004.5188.1 0.55 +0.2
4,922,564 - Xcc-8004.5188.1 0.55 +0.1
4,922,564 - Xcc-8004.5188.1 0.55 -0.5
4,922,632 + Xcc-8004.5188.1 0.59 -1.0
4,922,719 + Xcc-8004.5188.1 0.64 +0.9
4,922,741 + Xcc-8004.5188.1 0.65 +0.6
4,922,742 - Xcc-8004.5188.1 0.65 -0.2
4,922,812 + Xcc-8004.5188.1 0.69 -0.0
4,922,812 + Xcc-8004.5188.1 0.69 -2.5
4,922,813 - Xcc-8004.5188.1 0.69 +0.9
4,922,914 + Xcc-8004.5188.1 0.75 +0.4
4,922,915 - Xcc-8004.5188.1 0.75 -1.6
4,922,929 + Xcc-8004.5188.1 0.76 -1.9
4,922,929 + Xcc-8004.5188.1 0.76 +0.1
4,922,929 + Xcc-8004.5188.1 0.76 +1.5
4,922,929 + Xcc-8004.5188.1 0.76 -2.2
4,922,929 + Xcc-8004.5188.1 0.76 +1.1
4,922,930 - Xcc-8004.5188.1 0.76 +0.8
4,922,930 - Xcc-8004.5188.1 0.76 -0.8
4,922,930 - Xcc-8004.5188.1 0.76 +0.8
4,922,930 - Xcc-8004.5188.1 0.76 +1.2
4,922,930 - Xcc-8004.5188.1 0.76 +0.2
4,922,930 - Xcc-8004.5188.1 0.76 +0.8
4,922,930 - Xcc-8004.5188.1 0.76 +2.0
4,922,930 - Xcc-8004.5188.1 0.76 +0.3
4,922,962 + Xcc-8004.5188.1 0.78 +1.8
4,922,962 + Xcc-8004.5188.1 0.78 -0.2
4,922,962 + Xcc-8004.5188.1 0.78 +0.7
4,922,963 - Xcc-8004.5188.1 0.78 -0.3
4,922,963 - Xcc-8004.5188.1 0.78 -0.5
4,922,963 - Xcc-8004.5188.1 0.78 -0.5
4,922,963 - Xcc-8004.5188.1 0.78 +1.3
4,923,133 + Xcc-8004.5188.1 0.88 -1.7
4,923,133 + Xcc-8004.5188.1 0.88 -3.8
4,923,133 + Xcc-8004.5188.1 0.88 +0.3
4,923,134 - Xcc-8004.5188.1 0.88 -1.1
4,923,134 - Xcc-8004.5188.1 0.88 +2.3
4,923,199 + +0.4
4,923,199 + -0.6
4,923,199 + -0.3
4,923,200 - -0.7
4,923,200 - +0.2
4,923,200 - +0.5
4,923,200 - +0.7
4,923,346 + +0.7
4,923,346 + -2.7
4,923,346 + -0.2
4,923,346 + -0.9
4,923,347 - +1.5
4,923,347 - +0.7
4,923,533 - -0.6
4,923,533 - +0.2
4,923,552 + -0.2
4,923,552 + +0.9
4,923,553 - +0.2
4,923,553 - -0.9
4,923,553 - -0.8
4,923,553 - -1.8
4,923,553 - -0.4
4,923,700 + Xcc-8004.5189.1 0.74 -0.9
4,923,710 - Xcc-8004.5189.1 0.79 -1.7
4,923,721 + Xcc-8004.5189.1 0.83 -0.5
4,923,722 - Xcc-8004.5189.1 0.84 -2.0
4,923,815 + Xcc-8004.5190.1 0.17 -0.0
4,923,815 + Xcc-8004.5190.1 0.17 +0.5
4,923,831 - Xcc-8004.5190.1 0.20 +1.2
4,923,917 + Xcc-8004.5190.1 0.40 -0.0
4,923,917 + Xcc-8004.5190.1 0.40 -1.8
4,923,917 + Xcc-8004.5190.1 0.40 -0.9
4,923,917 + Xcc-8004.5190.1 0.40 -1.5
4,923,917 + Xcc-8004.5190.1 0.40 +0.3
4,923,917 + Xcc-8004.5190.1 0.40 -0.4
4,923,918 - Xcc-8004.5190.1 0.40 -0.9
4,923,918 - Xcc-8004.5190.1 0.40 +0.2
4,924,021 + Xcc-8004.5190.1 0.63 -0.0
4,924,022 - Xcc-8004.5190.1 0.63 -1.4
4,924,022 - Xcc-8004.5190.1 0.63 -0.7
4,924,269 + Xcc-8004.5191.1 0.17 +0.1
4,924,269 + Xcc-8004.5191.1 0.17 -0.3
4,924,270 - Xcc-8004.5191.1 0.17 +2.6
4,924,270 - Xcc-8004.5191.1 0.17 -0.6
4,924,298 + Xcc-8004.5191.1 0.23 +1.4
4,924,298 + Xcc-8004.5191.1 0.23 -1.2
4,924,374 + Xcc-8004.5191.1 0.41 +0.7
4,924,374 + Xcc-8004.5191.1 0.41 -1.1
4,924,375 - Xcc-8004.5191.1 0.42 -0.3
4,924,375 - Xcc-8004.5191.1 0.42 +0.1
4,924,394 + Xcc-8004.5191.1 0.46 +0.1
4,924,394 + Xcc-8004.5191.1 0.46 +1.4
4,924,395 - Xcc-8004.5191.1 0.46 +3.4
4,924,395 - Xcc-8004.5191.1 0.46 -0.0
4,924,395 - Xcc-8004.5191.1 0.46 -0.5
4,924,395 - Xcc-8004.5191.1 0.46 +1.4
4,924,395 - Xcc-8004.5191.1 0.46 -2.1
4,924,615 + -0.7
4,924,616 - +0.4
4,924,616 - -0.0
4,924,616 - -0.1
4,924,616 - +0.4
4,924,662 + -1.8
4,924,663 - +1.0
4,924,663 - -0.0
4,924,677 + -0.1
4,924,677 + +1.8
4,924,678 - +0.3
4,924,686 + -0.6
4,924,687 - -0.7
4,924,733 + +0.2
4,924,734 - -2.5
4,924,738 - +0.0

Or see this region's nucleotide sequence