Experiment: Citric Acid 10mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5174.1 and Xcc-8004.5181.1 are separated by 845 nucleotides Xcc-8004.5181.1 and Xcc-8004.5182.1 are separated by 144 nucleotides Xcc-8004.5182.1 and Xcc-8004.5183.1 are separated by 413 nucleotides
Xcc-8004.5174.1: Xcc-8004.5174.1 - Integral membrane protein, at 4,910,746 to 4,911,327
Xcc-8004.5174.1
Xcc-8004.5181.1: Xcc-8004.5181.1 - Sensor histidine kinase, at 4,912,173 to 4,915,616
Xcc-8004.5181.1
Xcc-8004.5182.1: Xcc-8004.5182.1 - hypothetical protein, at 4,915,761 to 4,915,937
Xcc-8004.5182.1
Xcc-8004.5183.1: Xcc-8004.5183.1 - Cyclic beta-1,2-glucan synthase (EC 2.4.1.-), at 4,916,351 to 4,918,747
Xcc-8004.5183.1
Position (kb) 4912
4913
4914
4915
4916 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4911.325 kb on + strand at 4911.346 kb on + strand at 4911.346 kb on + strand at 4911.346 kb on + strand at 4911.347 kb on - strand at 4911.427 kb on + strand at 4911.428 kb on - strand at 4911.428 kb on - strand at 4911.428 kb on - strand at 4911.498 kb on - strand at 4911.539 kb on - strand at 4911.556 kb on - strand at 4911.575 kb on + strand at 4911.576 kb on - strand at 4911.576 kb on - strand at 4911.656 kb on + strand at 4911.805 kb on + strand at 4911.806 kb on - strand at 4911.887 kb on - strand at 4911.924 kb on + strand at 4911.924 kb on + strand at 4911.925 kb on - strand at 4912.040 kb on - strand at 4912.141 kb on - strand at 4912.192 kb on + strand at 4912.384 kb on + strand at 4912.384 kb on + strand at 4912.385 kb on - strand at 4912.941 kb on - strand, within Xcc-8004.5181.1 at 4913.005 kb on + strand, within Xcc-8004.5181.1 at 4913.005 kb on + strand, within Xcc-8004.5181.1 at 4913.362 kb on + strand, within Xcc-8004.5181.1 at 4913.380 kb on + strand, within Xcc-8004.5181.1 at 4913.381 kb on - strand, within Xcc-8004.5181.1 at 4913.381 kb on - strand, within Xcc-8004.5181.1 at 4913.393 kb on - strand, within Xcc-8004.5181.1 at 4913.552 kb on - strand, within Xcc-8004.5181.1 at 4913.584 kb on + strand, within Xcc-8004.5181.1 at 4913.584 kb on + strand, within Xcc-8004.5181.1 at 4913.584 kb on + strand, within Xcc-8004.5181.1 at 4913.584 kb on + strand, within Xcc-8004.5181.1 at 4913.585 kb on - strand, within Xcc-8004.5181.1 at 4913.585 kb on - strand, within Xcc-8004.5181.1 at 4913.585 kb on - strand, within Xcc-8004.5181.1 at 4913.585 kb on - strand, within Xcc-8004.5181.1 at 4913.585 kb on - strand, within Xcc-8004.5181.1 at 4914.274 kb on + strand, within Xcc-8004.5181.1 at 4914.274 kb on + strand, within Xcc-8004.5181.1 at 4914.341 kb on - strand, within Xcc-8004.5181.1 at 4914.400 kb on + strand, within Xcc-8004.5181.1 at 4914.401 kb on - strand, within Xcc-8004.5181.1 at 4914.637 kb on + strand, within Xcc-8004.5181.1 at 4914.637 kb on + strand, within Xcc-8004.5181.1 at 4914.910 kb on - strand, within Xcc-8004.5181.1 at 4915.129 kb on + strand, within Xcc-8004.5181.1 at 4915.129 kb on + strand, within Xcc-8004.5181.1 at 4915.130 kb on - strand, within Xcc-8004.5181.1 at 4915.130 kb on - strand, within Xcc-8004.5181.1 at 4915.130 kb on - strand, within Xcc-8004.5181.1 at 4915.130 kb on - strand, within Xcc-8004.5181.1 at 4915.130 kb on - strand, within Xcc-8004.5181.1 at 4915.130 kb on - strand, within Xcc-8004.5181.1 at 4915.130 kb on - strand, within Xcc-8004.5181.1 at 4915.130 kb on - strand, within Xcc-8004.5181.1 at 4915.130 kb on - strand, within Xcc-8004.5181.1 at 4915.130 kb on - strand, within Xcc-8004.5181.1 at 4915.210 kb on + strand, within Xcc-8004.5181.1 at 4915.210 kb on + strand, within Xcc-8004.5181.1 at 4915.225 kb on + strand, within Xcc-8004.5181.1 at 4915.400 kb on - strand at 4915.450 kb on + strand at 4915.450 kb on + strand at 4915.450 kb on + strand at 4915.451 kb on - strand at 4915.451 kb on - strand at 4915.471 kb on + strand at 4915.471 kb on + strand at 4915.471 kb on + strand at 4915.471 kb on + strand at 4915.472 kb on - strand at 4915.472 kb on - strand at 4915.576 kb on + strand at 4915.599 kb on + strand at 4915.626 kb on + strand at 4915.652 kb on - strand at 4915.652 kb on - strand at 4915.652 kb on - strand at 4915.760 kb on + strand at 4915.760 kb on + strand at 4915.761 kb on - strand at 4915.761 kb on - strand at 4915.918 kb on + strand, within Xcc-8004.5182.1 at 4915.918 kb on + strand, within Xcc-8004.5182.1 at 4915.919 kb on - strand, within Xcc-8004.5182.1 at 4915.919 kb on - strand, within Xcc-8004.5182.1 at 4915.919 kb on - strand, within Xcc-8004.5182.1 at 4915.935 kb on + strand at 4915.936 kb on - strand at 4915.939 kb on + strand at 4915.939 kb on + strand at 4915.940 kb on - strand at 4915.940 kb on - strand at 4915.940 kb on - strand at 4915.940 kb on - strand at 4915.940 kb on - strand at 4915.945 kb on + strand at 4915.945 kb on + strand at 4915.945 kb on + strand at 4915.945 kb on + strand at 4915.945 kb on + strand at 4915.945 kb on + strand at 4915.945 kb on + strand at 4915.946 kb on + strand at 4915.946 kb on - strand at 4915.946 kb on - strand at 4915.946 kb on - strand at 4915.948 kb on + strand at 4915.949 kb on - strand at 4915.949 kb on - strand at 4915.949 kb on - strand at 4915.949 kb on - strand at 4915.949 kb on - strand at 4915.949 kb on - strand at 4915.949 kb on - strand at 4915.949 kb on - strand at 4915.949 kb on - strand at 4915.949 kb on - strand at 4915.987 kb on + strand at 4915.987 kb on + strand at 4915.988 kb on - strand at 4916.058 kb on + strand at 4916.058 kb on + strand at 4916.131 kb on + strand at 4916.164 kb on + strand at 4916.165 kb on - strand at 4916.265 kb on + strand at 4916.366 kb on + strand at 4916.366 kb on + strand at 4916.366 kb on + strand at 4916.379 kb on + strand at 4916.379 kb on + strand at 4916.379 kb on + strand at 4916.379 kb on + strand at 4916.380 kb on - strand at 4916.380 kb on - strand at 4916.380 kb on - strand at 4916.610 kb on + strand, within Xcc-8004.5183.1
Per-strain Table
Position Strand Gene LocusTag Fraction Citric Acid 10mM (C) remove 4,911,325 + -2.4 4,911,346 + +0.2 4,911,346 + -0.1 4,911,346 + +0.2 4,911,347 - -0.3 4,911,427 + -1.4 4,911,428 - -0.5 4,911,428 - -0.8 4,911,428 - -1.3 4,911,498 - -1.7 4,911,539 - -0.1 4,911,556 - -1.9 4,911,575 + +0.5 4,911,576 - +1.2 4,911,576 - -1.9 4,911,656 + +0.5 4,911,805 + -1.1 4,911,806 - -2.7 4,911,887 - -0.4 4,911,924 + -0.4 4,911,924 + +0.2 4,911,925 - -0.2 4,912,040 - -0.6 4,912,141 - +0.7 4,912,192 + -1.1 4,912,384 + +0.2 4,912,384 + -1.4 4,912,385 - -0.1 4,912,941 - Xcc-8004.5181.1 0.22 -0.4 4,913,005 + Xcc-8004.5181.1 0.24 -1.0 4,913,005 + Xcc-8004.5181.1 0.24 +1.2 4,913,362 + Xcc-8004.5181.1 0.35 -0.0 4,913,380 + Xcc-8004.5181.1 0.35 -1.1 4,913,381 - Xcc-8004.5181.1 0.35 -2.3 4,913,381 - Xcc-8004.5181.1 0.35 -1.4 4,913,393 - Xcc-8004.5181.1 0.35 -3.9 4,913,552 - Xcc-8004.5181.1 0.40 -2.7 4,913,584 + Xcc-8004.5181.1 0.41 -1.8 4,913,584 + Xcc-8004.5181.1 0.41 -1.7 4,913,584 + Xcc-8004.5181.1 0.41 +0.4 4,913,584 + Xcc-8004.5181.1 0.41 +0.2 4,913,585 - Xcc-8004.5181.1 0.41 -2.2 4,913,585 - Xcc-8004.5181.1 0.41 -1.4 4,913,585 - Xcc-8004.5181.1 0.41 -0.5 4,913,585 - Xcc-8004.5181.1 0.41 -2.2 4,913,585 - Xcc-8004.5181.1 0.41 -4.0 4,914,274 + Xcc-8004.5181.1 0.61 -2.0 4,914,274 + Xcc-8004.5181.1 0.61 -0.2 4,914,341 - Xcc-8004.5181.1 0.63 -3.2 4,914,400 + Xcc-8004.5181.1 0.65 -2.8 4,914,401 - Xcc-8004.5181.1 0.65 -1.5 4,914,637 + Xcc-8004.5181.1 0.72 +0.2 4,914,637 + Xcc-8004.5181.1 0.72 -0.5 4,914,910 - Xcc-8004.5181.1 0.79 -2.2 4,915,129 + Xcc-8004.5181.1 0.86 -1.0 4,915,129 + Xcc-8004.5181.1 0.86 +1.1 4,915,130 - Xcc-8004.5181.1 0.86 -0.9 4,915,130 - Xcc-8004.5181.1 0.86 -2.7 4,915,130 - Xcc-8004.5181.1 0.86 -2.2 4,915,130 - Xcc-8004.5181.1 0.86 -2.9 4,915,130 - Xcc-8004.5181.1 0.86 -3.4 4,915,130 - Xcc-8004.5181.1 0.86 -1.7 4,915,130 - Xcc-8004.5181.1 0.86 -2.1 4,915,130 - Xcc-8004.5181.1 0.86 -2.1 4,915,130 - Xcc-8004.5181.1 0.86 +0.8 4,915,130 - Xcc-8004.5181.1 0.86 -1.9 4,915,210 + Xcc-8004.5181.1 0.88 -1.0 4,915,210 + Xcc-8004.5181.1 0.88 -0.4 4,915,225 + Xcc-8004.5181.1 0.89 +0.8 4,915,400 - -1.0 4,915,450 + -0.3 4,915,450 + +0.5 4,915,450 + -2.3 4,915,451 - -0.3 4,915,451 - +0.1 4,915,471 + -0.5 4,915,471 + -1.5 4,915,471 + +0.3 4,915,471 + +0.8 4,915,472 - -2.7 4,915,472 - -1.7 4,915,576 + -0.5 4,915,599 + +0.8 4,915,626 + -0.7 4,915,652 - +0.5 4,915,652 - -0.5 4,915,652 - +0.7 4,915,760 + -0.7 4,915,760 + -1.9 4,915,761 - -2.1 4,915,761 - -0.5 4,915,918 + Xcc-8004.5182.1 0.89 -0.7 4,915,918 + Xcc-8004.5182.1 0.89 -1.8 4,915,919 - Xcc-8004.5182.1 0.89 +0.1 4,915,919 - Xcc-8004.5182.1 0.89 -1.2 4,915,919 - Xcc-8004.5182.1 0.89 +0.3 4,915,935 + -1.5 4,915,936 - -0.0 4,915,939 + +1.6 4,915,939 + -0.6 4,915,940 - -0.4 4,915,940 - -0.9 4,915,940 - -1.5 4,915,940 - +3.1 4,915,940 - +0.2 4,915,945 + +3.3 4,915,945 + -0.9 4,915,945 + -0.7 4,915,945 + -0.6 4,915,945 + -0.2 4,915,945 + +0.4 4,915,945 + -0.5 4,915,946 + +1.5 4,915,946 - +0.6 4,915,946 - -0.0 4,915,946 - +1.1 4,915,948 + -0.9 4,915,949 - +0.6 4,915,949 - +0.4 4,915,949 - -0.9 4,915,949 - +0.8 4,915,949 - +0.3 4,915,949 - -1.2 4,915,949 - -0.4 4,915,949 - +0.8 4,915,949 - -0.4 4,915,949 - +0.1 4,915,987 + -0.4 4,915,987 + -1.1 4,915,988 - -1.1 4,916,058 + +0.5 4,916,058 + -0.5 4,916,131 + +1.4 4,916,164 + +1.2 4,916,165 - -1.0 4,916,265 + +0.1 4,916,366 + -0.4 4,916,366 + -2.6 4,916,366 + -0.5 4,916,379 + +0.3 4,916,379 + +0.5 4,916,379 + -1.8 4,916,379 + +1.4 4,916,380 - -1.4 4,916,380 - +0.8 4,916,380 - +0.9 4,916,610 + Xcc-8004.5183.1 0.11 +0.4
Or see this region's nucleotide sequence