Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5120.1

Experiment: Citric Acid 10mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5119.1 and Xcc-8004.5120.1 are separated by 234 nucleotidesXcc-8004.5120.1 and Xcc-8004.5121.1 overlap by 43 nucleotidesXcc-8004.5121.1 and Xcc-8004.5122.1 are separated by 70 nucleotidesXcc-8004.5122.1 and Xcc-8004.5123.1 are separated by 297 nucleotidesXcc-8004.5123.1 and Xcc-8004.5124.1 overlap by 4 nucleotides Xcc-8004.5119.1: Xcc-8004.5119.1 - FldA protein, at 4,854,407 to 4,855,462 Xcc-8004.5119.1 Xcc-8004.5120.1: Xcc-8004.5120.1 - 4-oxalomesaconate hydratase (EC 4.2.1.83), at 4,855,697 to 4,856,719 Xcc-8004.5120.1 Xcc-8004.5121.1: Xcc-8004.5121.1 - hypothetical protein, at 4,856,677 to 4,856,829 Xcc-8004.5121.1 Xcc-8004.5122.1: Xcc-8004.5122.1 - hypothetical protein, at 4,856,900 to 4,857,046 Xcc-8004.5122.1 Xcc-8004.5123.1: Xcc-8004.5123.1 - hypothetical protein, at 4,857,344 to 4,857,496 Xcc-8004.5123.1 Xcc-8004.5124.1: Xcc-8004.5124.1 - hypothetical protein, at 4,857,493 to 4,857,705 Xcc-8004.5124.1 Position (kb) 4855 4856 4857Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4854.836 kb on + strand, within Xcc-8004.5119.1at 4854.836 kb on + strand, within Xcc-8004.5119.1at 4854.837 kb on - strand, within Xcc-8004.5119.1at 4854.837 kb on - strand, within Xcc-8004.5119.1at 4854.837 kb on - strand, within Xcc-8004.5119.1at 4855.008 kb on + strand, within Xcc-8004.5119.1at 4855.009 kb on - strand, within Xcc-8004.5119.1at 4855.009 kb on - strand, within Xcc-8004.5119.1at 4855.599 kb on - strandat 4855.599 kb on - strandat 4855.608 kb on + strandat 4855.608 kb on + strandat 4855.608 kb on + strandat 4855.608 kb on + strandat 4855.609 kb on - strandat 4855.609 kb on - strandat 4855.609 kb on - strandat 4855.609 kb on - strandat 4855.609 kb on - strandat 4855.612 kb on + strandat 4855.612 kb on + strandat 4855.613 kb on - strandat 4855.613 kb on - strandat 4855.613 kb on - strandat 4855.613 kb on - strandat 4855.721 kb on + strandat 4855.721 kb on + strandat 4855.722 kb on - strandat 4855.722 kb on - strandat 4855.722 kb on - strandat 4855.722 kb on - strandat 4856.000 kb on + strand, within Xcc-8004.5120.1at 4856.001 kb on - strand, within Xcc-8004.5120.1at 4856.001 kb on - strand, within Xcc-8004.5120.1at 4856.097 kb on + strand, within Xcc-8004.5120.1at 4856.097 kb on + strand, within Xcc-8004.5120.1at 4856.097 kb on + strand, within Xcc-8004.5120.1at 4856.098 kb on - strand, within Xcc-8004.5120.1at 4856.098 kb on - strand, within Xcc-8004.5120.1at 4856.273 kb on + strand, within Xcc-8004.5120.1at 4856.274 kb on - strand, within Xcc-8004.5120.1at 4856.274 kb on - strand, within Xcc-8004.5120.1at 4856.274 kb on - strand, within Xcc-8004.5120.1at 4856.382 kb on - strand, within Xcc-8004.5120.1at 4856.477 kb on + strand, within Xcc-8004.5120.1at 4856.477 kb on + strand, within Xcc-8004.5120.1at 4856.477 kb on + strand, within Xcc-8004.5120.1at 4856.477 kb on + strand, within Xcc-8004.5120.1at 4856.478 kb on - strand, within Xcc-8004.5120.1at 4856.588 kb on + strand, within Xcc-8004.5120.1at 4856.588 kb on + strand, within Xcc-8004.5120.1at 4856.589 kb on - strand, within Xcc-8004.5120.1at 4856.609 kb on + strand, within Xcc-8004.5120.1at 4856.609 kb on + strand, within Xcc-8004.5120.1at 4856.610 kb on - strand, within Xcc-8004.5120.1at 4856.610 kb on - strand, within Xcc-8004.5120.1at 4856.610 kb on - strand, within Xcc-8004.5120.1at 4856.610 kb on - strand, within Xcc-8004.5120.1at 4856.860 kb on + strandat 4856.876 kb on - strandat 4856.876 kb on - strandat 4856.995 kb on + strand, within Xcc-8004.5122.1at 4856.995 kb on + strand, within Xcc-8004.5122.1at 4856.995 kb on + strand, within Xcc-8004.5122.1at 4856.995 kb on + strand, within Xcc-8004.5122.1at 4856.995 kb on + strand, within Xcc-8004.5122.1at 4857.056 kb on + strandat 4857.099 kb on - strandat 4857.099 kb on - strandat 4857.216 kb on + strandat 4857.319 kb on + strandat 4857.439 kb on + strand, within Xcc-8004.5123.1at 4857.521 kb on + strand, within Xcc-8004.5124.1at 4857.521 kb on + strand, within Xcc-8004.5124.1at 4857.521 kb on + strand, within Xcc-8004.5124.1at 4857.521 kb on + strand, within Xcc-8004.5124.1at 4857.521 kb on + strand, within Xcc-8004.5124.1at 4857.521 kb on + strand, within Xcc-8004.5124.1at 4857.521 kb on + strand, within Xcc-8004.5124.1at 4857.521 kb on + strand, within Xcc-8004.5124.1at 4857.521 kb on + strand, within Xcc-8004.5124.1at 4857.522 kb on - strand, within Xcc-8004.5124.1at 4857.522 kb on - strand, within Xcc-8004.5124.1at 4857.522 kb on - strand, within Xcc-8004.5124.1at 4857.522 kb on - strand, within Xcc-8004.5124.1at 4857.537 kb on - strand, within Xcc-8004.5124.1at 4857.537 kb on - strand, within Xcc-8004.5124.1at 4857.537 kb on - strand, within Xcc-8004.5124.1at 4857.537 kb on - strand, within Xcc-8004.5124.1at 4857.537 kb on - strand, within Xcc-8004.5124.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid 10mM (C)
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4,854,836 + Xcc-8004.5119.1 0.41 +1.0
4,854,836 + Xcc-8004.5119.1 0.41 +0.0
4,854,837 - Xcc-8004.5119.1 0.41 -0.7
4,854,837 - Xcc-8004.5119.1 0.41 +0.3
4,854,837 - Xcc-8004.5119.1 0.41 -0.6
4,855,008 + Xcc-8004.5119.1 0.57 +1.0
4,855,009 - Xcc-8004.5119.1 0.57 -0.0
4,855,009 - Xcc-8004.5119.1 0.57 -2.5
4,855,599 - -0.8
4,855,599 - +0.2
4,855,608 + -0.0
4,855,608 + -0.2
4,855,608 + -1.6
4,855,608 + -1.0
4,855,609 - -0.8
4,855,609 - +0.9
4,855,609 - +0.4
4,855,609 - -0.5
4,855,609 - -0.4
4,855,612 + +1.5
4,855,612 + +2.4
4,855,613 - +0.6
4,855,613 - -2.4
4,855,613 - -2.0
4,855,613 - +1.1
4,855,721 + -1.0
4,855,721 + +1.4
4,855,722 - +0.9
4,855,722 - -0.7
4,855,722 - +1.0
4,855,722 - -1.0
4,856,000 + Xcc-8004.5120.1 0.30 -1.8
4,856,001 - Xcc-8004.5120.1 0.30 -2.3
4,856,001 - Xcc-8004.5120.1 0.30 -1.6
4,856,097 + Xcc-8004.5120.1 0.39 -1.9
4,856,097 + Xcc-8004.5120.1 0.39 +1.4
4,856,097 + Xcc-8004.5120.1 0.39 +0.4
4,856,098 - Xcc-8004.5120.1 0.39 +0.3
4,856,098 - Xcc-8004.5120.1 0.39 -3.3
4,856,273 + Xcc-8004.5120.1 0.56 -1.2
4,856,274 - Xcc-8004.5120.1 0.56 -1.2
4,856,274 - Xcc-8004.5120.1 0.56 -2.6
4,856,274 - Xcc-8004.5120.1 0.56 -1.2
4,856,382 - Xcc-8004.5120.1 0.67 -0.5
4,856,477 + Xcc-8004.5120.1 0.76 +0.8
4,856,477 + Xcc-8004.5120.1 0.76 +1.8
4,856,477 + Xcc-8004.5120.1 0.76 +0.7
4,856,477 + Xcc-8004.5120.1 0.76 +0.1
4,856,478 - Xcc-8004.5120.1 0.76 -1.0
4,856,588 + Xcc-8004.5120.1 0.87 -0.2
4,856,588 + Xcc-8004.5120.1 0.87 -2.9
4,856,589 - Xcc-8004.5120.1 0.87 +0.5
4,856,609 + Xcc-8004.5120.1 0.89 -0.2
4,856,609 + Xcc-8004.5120.1 0.89 -0.4
4,856,610 - Xcc-8004.5120.1 0.89 -1.6
4,856,610 - Xcc-8004.5120.1 0.89 +0.0
4,856,610 - Xcc-8004.5120.1 0.89 -2.4
4,856,610 - Xcc-8004.5120.1 0.89 -1.2
4,856,860 + -1.8
4,856,876 - +0.5
4,856,876 - -0.7
4,856,995 + Xcc-8004.5122.1 0.65 -0.8
4,856,995 + Xcc-8004.5122.1 0.65 -0.3
4,856,995 + Xcc-8004.5122.1 0.65 +0.1
4,856,995 + Xcc-8004.5122.1 0.65 -1.1
4,856,995 + Xcc-8004.5122.1 0.65 +0.1
4,857,056 + -0.7
4,857,099 - -2.6
4,857,099 - +1.4
4,857,216 + +0.0
4,857,319 + +0.2
4,857,439 + Xcc-8004.5123.1 0.62 -0.2
4,857,521 + Xcc-8004.5124.1 0.13 +0.3
4,857,521 + Xcc-8004.5124.1 0.13 -0.4
4,857,521 + Xcc-8004.5124.1 0.13 +0.5
4,857,521 + Xcc-8004.5124.1 0.13 -1.0
4,857,521 + Xcc-8004.5124.1 0.13 +1.9
4,857,521 + Xcc-8004.5124.1 0.13 -1.2
4,857,521 + Xcc-8004.5124.1 0.13 +0.6
4,857,521 + Xcc-8004.5124.1 0.13 -0.2
4,857,521 + Xcc-8004.5124.1 0.13 -1.5
4,857,522 - Xcc-8004.5124.1 0.14 -1.4
4,857,522 - Xcc-8004.5124.1 0.14 +1.0
4,857,522 - Xcc-8004.5124.1 0.14 -3.1
4,857,522 - Xcc-8004.5124.1 0.14 +0.3
4,857,537 - Xcc-8004.5124.1 0.21 -0.3
4,857,537 - Xcc-8004.5124.1 0.21 +0.1
4,857,537 - Xcc-8004.5124.1 0.21 -1.7
4,857,537 - Xcc-8004.5124.1 0.21 -1.0
4,857,537 - Xcc-8004.5124.1 0.21 -1.4

Or see this region's nucleotide sequence