Experiment: Citric Acid 10mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4780.1 and Xcc-8004.4781.1 are separated by 225 nucleotides Xcc-8004.4781.1 and Xcc-8004.4782.1 are separated by 9 nucleotides
Xcc-8004.4780.1: Xcc-8004.4780.1 - Transcription termination factor Rho, at 4,547,486 to 4,549,351
Xcc-8004.4780.1
Xcc-8004.4781.1: Xcc-8004.4781.1 - FIG01111847: hypothetical protein, at 4,549,577 to 4,550,500
Xcc-8004.4781.1
Xcc-8004.4782.1: Xcc-8004.4782.1 - Isocitrate dehydrogenase phosphatase (EC 2.7.11.5)/kinase (EC 3.1.3.-), at 4,550,510 to 4,552,249
Xcc-8004.4782.1
Position (kb) 4549
4550
4551 Strain fitness (log2 ratio) -2
-1
0
1
2 at 4549.415 kb on - strand at 4549.623 kb on - strand at 4549.725 kb on + strand, within Xcc-8004.4781.1 at 4549.725 kb on + strand, within Xcc-8004.4781.1 at 4549.726 kb on - strand, within Xcc-8004.4781.1 at 4549.726 kb on - strand, within Xcc-8004.4781.1 at 4549.809 kb on + strand, within Xcc-8004.4781.1 at 4549.998 kb on + strand, within Xcc-8004.4781.1 at 4549.999 kb on - strand, within Xcc-8004.4781.1 at 4549.999 kb on - strand, within Xcc-8004.4781.1 at 4550.040 kb on + strand, within Xcc-8004.4781.1 at 4550.041 kb on - strand, within Xcc-8004.4781.1 at 4550.127 kb on + strand, within Xcc-8004.4781.1 at 4550.387 kb on + strand, within Xcc-8004.4781.1 at 4550.421 kb on - strand at 4550.483 kb on - strand at 4550.483 kb on - strand at 4550.736 kb on + strand, within Xcc-8004.4782.1 at 4550.737 kb on - strand, within Xcc-8004.4782.1 at 4550.737 kb on - strand, within Xcc-8004.4782.1 at 4550.802 kb on + strand, within Xcc-8004.4782.1 at 4550.803 kb on - strand, within Xcc-8004.4782.1 at 4550.901 kb on + strand, within Xcc-8004.4782.1 at 4550.902 kb on - strand, within Xcc-8004.4782.1 at 4550.902 kb on - strand, within Xcc-8004.4782.1 at 4550.949 kb on + strand, within Xcc-8004.4782.1 at 4550.949 kb on + strand, within Xcc-8004.4782.1 at 4550.950 kb on - strand, within Xcc-8004.4782.1 at 4550.982 kb on + strand, within Xcc-8004.4782.1 at 4551.099 kb on + strand, within Xcc-8004.4782.1 at 4551.192 kb on + strand, within Xcc-8004.4782.1 at 4551.231 kb on + strand, within Xcc-8004.4782.1 at 4551.376 kb on - strand, within Xcc-8004.4782.1 at 4551.376 kb on - strand, within Xcc-8004.4782.1 at 4551.394 kb on + strand, within Xcc-8004.4782.1 at 4551.395 kb on - strand, within Xcc-8004.4782.1 at 4551.395 kb on - strand, within Xcc-8004.4782.1 at 4551.460 kb on - strand, within Xcc-8004.4782.1 at 4551.460 kb on - strand, within Xcc-8004.4782.1 at 4551.472 kb on + strand, within Xcc-8004.4782.1 at 4551.472 kb on + strand, within Xcc-8004.4782.1 at 4551.473 kb on - strand, within Xcc-8004.4782.1
Per-strain Table
Position Strand Gene LocusTag Fraction Citric Acid 10mM (C) remove 4,549,415 - -2.0 4,549,623 - -1.8 4,549,725 + Xcc-8004.4781.1 0.16 +0.2 4,549,725 + Xcc-8004.4781.1 0.16 -0.3 4,549,726 - Xcc-8004.4781.1 0.16 -0.0 4,549,726 - Xcc-8004.4781.1 0.16 -0.3 4,549,809 + Xcc-8004.4781.1 0.25 -0.9 4,549,998 + Xcc-8004.4781.1 0.46 -1.8 4,549,999 - Xcc-8004.4781.1 0.46 -1.9 4,549,999 - Xcc-8004.4781.1 0.46 +0.9 4,550,040 + Xcc-8004.4781.1 0.50 +0.2 4,550,041 - Xcc-8004.4781.1 0.50 -2.0 4,550,127 + Xcc-8004.4781.1 0.60 -2.6 4,550,387 + Xcc-8004.4781.1 0.88 +0.2 4,550,421 - -0.5 4,550,483 - -1.4 4,550,483 - -0.2 4,550,736 + Xcc-8004.4782.1 0.13 -0.0 4,550,737 - Xcc-8004.4782.1 0.13 -0.5 4,550,737 - Xcc-8004.4782.1 0.13 +0.7 4,550,802 + Xcc-8004.4782.1 0.17 +0.5 4,550,803 - Xcc-8004.4782.1 0.17 -0.0 4,550,901 + Xcc-8004.4782.1 0.22 +0.3 4,550,902 - Xcc-8004.4782.1 0.23 +1.1 4,550,902 - Xcc-8004.4782.1 0.23 -0.4 4,550,949 + Xcc-8004.4782.1 0.25 +0.7 4,550,949 + Xcc-8004.4782.1 0.25 -1.0 4,550,950 - Xcc-8004.4782.1 0.25 -0.8 4,550,982 + Xcc-8004.4782.1 0.27 +0.3 4,551,099 + Xcc-8004.4782.1 0.34 -0.8 4,551,192 + Xcc-8004.4782.1 0.39 +1.5 4,551,231 + Xcc-8004.4782.1 0.41 +1.8 4,551,376 - Xcc-8004.4782.1 0.50 -0.4 4,551,376 - Xcc-8004.4782.1 0.50 -1.1 4,551,394 + Xcc-8004.4782.1 0.51 +0.8 4,551,395 - Xcc-8004.4782.1 0.51 +0.5 4,551,395 - Xcc-8004.4782.1 0.51 +1.8 4,551,460 - Xcc-8004.4782.1 0.55 -1.5 4,551,460 - Xcc-8004.4782.1 0.55 -0.5 4,551,472 + Xcc-8004.4782.1 0.55 +1.1 4,551,472 + Xcc-8004.4782.1 0.55 -0.7 4,551,473 - Xcc-8004.4782.1 0.55 -1.0
Or see this region's nucleotide sequence