Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4708.1

Experiment: Citric Acid 10mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4707.1 and Xcc-8004.4708.1 are separated by 135 nucleotidesXcc-8004.4708.1 and Xcc-8004.4709.1 are separated by 48 nucleotides Xcc-8004.4707.1: Xcc-8004.4707.1 - Transcriptional regulator, LysR family, at 4,485,618 to 4,486,544 Xcc-8004.4707.1 Xcc-8004.4708.1: Xcc-8004.4708.1 - Putative translation initiation inhibitor, yjgF family, at 4,486,680 to 4,487,084 Xcc-8004.4708.1 Xcc-8004.4709.1: Xcc-8004.4709.1 - Short-chain dehydrogenase/reductase SDR, at 4,487,133 to 4,488,035 Xcc-8004.4709.1 Position (kb) 4486 4487 4488Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4485.808 kb on + strand, within Xcc-8004.4707.1at 4485.808 kb on + strand, within Xcc-8004.4707.1at 4485.809 kb on - strand, within Xcc-8004.4707.1at 4485.809 kb on - strand, within Xcc-8004.4707.1at 4485.809 kb on - strand, within Xcc-8004.4707.1at 4485.809 kb on - strand, within Xcc-8004.4707.1at 4485.856 kb on + strand, within Xcc-8004.4707.1at 4485.886 kb on + strand, within Xcc-8004.4707.1at 4485.970 kb on - strand, within Xcc-8004.4707.1at 4485.970 kb on - strand, within Xcc-8004.4707.1at 4485.993 kb on + strand, within Xcc-8004.4707.1at 4485.994 kb on - strand, within Xcc-8004.4707.1at 4486.048 kb on + strand, within Xcc-8004.4707.1at 4486.048 kb on + strand, within Xcc-8004.4707.1at 4486.048 kb on + strand, within Xcc-8004.4707.1at 4486.049 kb on - strand, within Xcc-8004.4707.1at 4486.049 kb on - strand, within Xcc-8004.4707.1at 4486.049 kb on - strand, within Xcc-8004.4707.1at 4486.049 kb on - strand, within Xcc-8004.4707.1at 4486.185 kb on - strand, within Xcc-8004.4707.1at 4486.349 kb on - strand, within Xcc-8004.4707.1at 4486.351 kb on + strand, within Xcc-8004.4707.1at 4486.351 kb on + strand, within Xcc-8004.4707.1at 4486.351 kb on + strand, within Xcc-8004.4707.1at 4486.579 kb on + strandat 4486.580 kb on - strandat 4486.585 kb on + strandat 4486.585 kb on + strandat 4486.585 kb on + strandat 4486.585 kb on + strandat 4486.585 kb on + strandat 4486.585 kb on + strandat 4486.586 kb on - strandat 4486.586 kb on - strandat 4486.609 kb on + strandat 4486.610 kb on - strandat 4486.630 kb on + strandat 4486.631 kb on - strandat 4486.631 kb on - strandat 4486.667 kb on + strandat 4486.667 kb on + strandat 4486.667 kb on + strandat 4486.667 kb on + strandat 4486.667 kb on + strandat 4486.667 kb on + strandat 4486.667 kb on + strandat 4486.667 kb on + strandat 4486.667 kb on + strandat 4486.667 kb on + strandat 4486.667 kb on + strandat 4486.667 kb on + strandat 4486.668 kb on - strandat 4486.668 kb on - strandat 4486.668 kb on - strandat 4486.675 kb on - strandat 4486.725 kb on + strand, within Xcc-8004.4708.1at 4486.725 kb on + strand, within Xcc-8004.4708.1at 4486.725 kb on + strand, within Xcc-8004.4708.1at 4486.725 kb on + strand, within Xcc-8004.4708.1at 4486.725 kb on + strand, within Xcc-8004.4708.1at 4486.726 kb on - strand, within Xcc-8004.4708.1at 4486.726 kb on - strand, within Xcc-8004.4708.1at 4486.726 kb on - strand, within Xcc-8004.4708.1at 4486.726 kb on - strand, within Xcc-8004.4708.1at 4487.025 kb on + strand, within Xcc-8004.4708.1at 4487.026 kb on - strand, within Xcc-8004.4708.1at 4487.026 kb on - strand, within Xcc-8004.4708.1at 4487.105 kb on + strandat 4487.242 kb on + strand, within Xcc-8004.4709.1at 4487.284 kb on - strand, within Xcc-8004.4709.1at 4487.299 kb on - strand, within Xcc-8004.4709.1at 4487.377 kb on + strand, within Xcc-8004.4709.1at 4487.377 kb on + strand, within Xcc-8004.4709.1at 4487.378 kb on - strand, within Xcc-8004.4709.1at 4487.378 kb on - strand, within Xcc-8004.4709.1at 4487.408 kb on - strand, within Xcc-8004.4709.1at 4487.525 kb on - strand, within Xcc-8004.4709.1at 4487.557 kb on + strand, within Xcc-8004.4709.1at 4487.557 kb on + strand, within Xcc-8004.4709.1at 4487.558 kb on - strand, within Xcc-8004.4709.1at 4487.558 kb on - strand, within Xcc-8004.4709.1at 4487.620 kb on + strand, within Xcc-8004.4709.1at 4487.620 kb on + strand, within Xcc-8004.4709.1at 4487.621 kb on - strand, within Xcc-8004.4709.1at 4487.621 kb on - strand, within Xcc-8004.4709.1at 4487.752 kb on + strand, within Xcc-8004.4709.1at 4487.752 kb on + strand, within Xcc-8004.4709.1at 4487.752 kb on + strand, within Xcc-8004.4709.1at 4487.752 kb on + strand, within Xcc-8004.4709.1at 4487.753 kb on - strand, within Xcc-8004.4709.1at 4487.753 kb on - strand, within Xcc-8004.4709.1at 4487.753 kb on - strand, within Xcc-8004.4709.1at 4487.753 kb on - strand, within Xcc-8004.4709.1at 4487.890 kb on + strand, within Xcc-8004.4709.1at 4487.890 kb on + strand, within Xcc-8004.4709.1at 4487.890 kb on + strand, within Xcc-8004.4709.1at 4487.950 kb on + strandat 4487.960 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid 10mM (C)
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4,485,808 + Xcc-8004.4707.1 0.20 +0.1
4,485,808 + Xcc-8004.4707.1 0.20 -1.7
4,485,809 - Xcc-8004.4707.1 0.21 -0.2
4,485,809 - Xcc-8004.4707.1 0.21 -1.6
4,485,809 - Xcc-8004.4707.1 0.21 +0.4
4,485,809 - Xcc-8004.4707.1 0.21 -2.9
4,485,856 + Xcc-8004.4707.1 0.26 -0.6
4,485,886 + Xcc-8004.4707.1 0.29 +0.2
4,485,970 - Xcc-8004.4707.1 0.38 -2.8
4,485,970 - Xcc-8004.4707.1 0.38 -1.8
4,485,993 + Xcc-8004.4707.1 0.40 +0.4
4,485,994 - Xcc-8004.4707.1 0.41 -0.4
4,486,048 + Xcc-8004.4707.1 0.46 -0.0
4,486,048 + Xcc-8004.4707.1 0.46 +1.9
4,486,048 + Xcc-8004.4707.1 0.46 -0.6
4,486,049 - Xcc-8004.4707.1 0.46 -0.8
4,486,049 - Xcc-8004.4707.1 0.46 -1.7
4,486,049 - Xcc-8004.4707.1 0.46 +0.5
4,486,049 - Xcc-8004.4707.1 0.46 -0.9
4,486,185 - Xcc-8004.4707.1 0.61 -1.3
4,486,349 - Xcc-8004.4707.1 0.79 -0.9
4,486,351 + Xcc-8004.4707.1 0.79 -0.6
4,486,351 + Xcc-8004.4707.1 0.79 -0.2
4,486,351 + Xcc-8004.4707.1 0.79 -0.8
4,486,579 + -0.6
4,486,580 - -0.4
4,486,585 + +0.3
4,486,585 + +0.9
4,486,585 + -2.1
4,486,585 + -2.3
4,486,585 + +1.3
4,486,585 + -3.1
4,486,586 - +0.5
4,486,586 - +2.0
4,486,609 + +0.3
4,486,610 - -0.6
4,486,630 + -0.8
4,486,631 - -0.4
4,486,631 - -0.8
4,486,667 + +0.2
4,486,667 + +1.3
4,486,667 + +1.2
4,486,667 + -1.7
4,486,667 + +0.5
4,486,667 + -0.6
4,486,667 + -1.2
4,486,667 + -0.2
4,486,667 + -0.4
4,486,667 + +0.7
4,486,667 + +1.8
4,486,667 + +2.2
4,486,668 - +1.2
4,486,668 - -0.1
4,486,668 - -2.5
4,486,675 - +0.5
4,486,725 + Xcc-8004.4708.1 0.11 +0.8
4,486,725 + Xcc-8004.4708.1 0.11 +0.9
4,486,725 + Xcc-8004.4708.1 0.11 +0.4
4,486,725 + Xcc-8004.4708.1 0.11 -1.0
4,486,725 + Xcc-8004.4708.1 0.11 +1.0
4,486,726 - Xcc-8004.4708.1 0.11 -2.3
4,486,726 - Xcc-8004.4708.1 0.11 -0.5
4,486,726 - Xcc-8004.4708.1 0.11 -2.0
4,486,726 - Xcc-8004.4708.1 0.11 +0.8
4,487,025 + Xcc-8004.4708.1 0.85 +0.7
4,487,026 - Xcc-8004.4708.1 0.85 +1.7
4,487,026 - Xcc-8004.4708.1 0.85 +1.1
4,487,105 + +0.1
4,487,242 + Xcc-8004.4709.1 0.12 +0.2
4,487,284 - Xcc-8004.4709.1 0.17 -0.9
4,487,299 - Xcc-8004.4709.1 0.18 -1.5
4,487,377 + Xcc-8004.4709.1 0.27 +0.3
4,487,377 + Xcc-8004.4709.1 0.27 -0.6
4,487,378 - Xcc-8004.4709.1 0.27 +1.4
4,487,378 - Xcc-8004.4709.1 0.27 -0.5
4,487,408 - Xcc-8004.4709.1 0.30 +1.3
4,487,525 - Xcc-8004.4709.1 0.43 -0.1
4,487,557 + Xcc-8004.4709.1 0.47 -0.4
4,487,557 + Xcc-8004.4709.1 0.47 -0.4
4,487,558 - Xcc-8004.4709.1 0.47 -0.9
4,487,558 - Xcc-8004.4709.1 0.47 -1.2
4,487,620 + Xcc-8004.4709.1 0.54 -0.8
4,487,620 + Xcc-8004.4709.1 0.54 +0.5
4,487,621 - Xcc-8004.4709.1 0.54 -0.2
4,487,621 - Xcc-8004.4709.1 0.54 -0.7
4,487,752 + Xcc-8004.4709.1 0.69 -1.7
4,487,752 + Xcc-8004.4709.1 0.69 -1.4
4,487,752 + Xcc-8004.4709.1 0.69 +1.9
4,487,752 + Xcc-8004.4709.1 0.69 +0.4
4,487,753 - Xcc-8004.4709.1 0.69 -0.1
4,487,753 - Xcc-8004.4709.1 0.69 +1.4
4,487,753 - Xcc-8004.4709.1 0.69 +0.0
4,487,753 - Xcc-8004.4709.1 0.69 +0.3
4,487,890 + Xcc-8004.4709.1 0.84 +0.4
4,487,890 + Xcc-8004.4709.1 0.84 -1.0
4,487,890 + Xcc-8004.4709.1 0.84 -0.1
4,487,950 + +0.1
4,487,960 - +0.6

Or see this region's nucleotide sequence