Experiment: Citric Acid 10mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4597.1 and Xcc-8004.4599.1 overlap by 115 nucleotides Xcc-8004.4599.1 and Xcc-8004.4601.1 are separated by 112 nucleotides Xcc-8004.4601.1 and Xcc-8004.4602.1 are separated by 201 nucleotides Xcc-8004.4602.1 and Xcc-8004.4603.1 overlap by 4 nucleotides
Xcc-8004.4597.1: Xcc-8004.4597.1 - Mobile element protein, at 4,384,098 to 4,385,522
Xcc-8004.4597.1
Xcc-8004.4599.1: Xcc-8004.4599.1 - Mobile element protein, at 4,385,408 to 4,385,569
Xcc-8004.4599.1
Xcc-8004.4601.1: Xcc-8004.4601.1 - Methionine ABC transporter substrate-binding protein, at 4,385,682 to 4,386,482
Xcc-8004.4601.1
Xcc-8004.4602.1: Xcc-8004.4602.1 - Methionine ABC transporter permease protein, at 4,386,684 to 4,387,382
Xcc-8004.4602.1
Xcc-8004.4603.1: Xcc-8004.4603.1 - Methionine ABC transporter ATP-binding protein, at 4,387,379 to 4,388,386
Xcc-8004.4603.1
Position (kb) 4385
4386
4387 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4385.548 kb on + strand, within Xcc-8004.4599.1 at 4385.578 kb on + strand at 4385.578 kb on + strand at 4385.579 kb on - strand at 4385.579 kb on - strand at 4385.579 kb on - strand at 4385.617 kb on + strand at 4385.618 kb on - strand at 4385.618 kb on - strand at 4385.618 kb on - strand at 4385.618 kb on - strand at 4385.618 kb on - strand at 4385.618 kb on - strand at 4385.618 kb on - strand at 4385.662 kb on - strand at 4385.684 kb on - strand at 4385.684 kb on - strand at 4385.684 kb on - strand at 4385.710 kb on + strand at 4385.711 kb on - strand at 4385.711 kb on - strand at 4385.818 kb on + strand, within Xcc-8004.4601.1 at 4385.819 kb on - strand, within Xcc-8004.4601.1 at 4385.819 kb on - strand, within Xcc-8004.4601.1 at 4385.884 kb on + strand, within Xcc-8004.4601.1 at 4385.884 kb on + strand, within Xcc-8004.4601.1 at 4385.884 kb on + strand, within Xcc-8004.4601.1 at 4385.884 kb on + strand, within Xcc-8004.4601.1 at 4385.884 kb on + strand, within Xcc-8004.4601.1 at 4385.885 kb on - strand, within Xcc-8004.4601.1 at 4385.885 kb on - strand, within Xcc-8004.4601.1 at 4386.143 kb on - strand, within Xcc-8004.4601.1 at 4386.208 kb on + strand, within Xcc-8004.4601.1 at 4386.208 kb on + strand, within Xcc-8004.4601.1 at 4386.238 kb on + strand, within Xcc-8004.4601.1 at 4386.238 kb on + strand, within Xcc-8004.4601.1 at 4386.239 kb on - strand, within Xcc-8004.4601.1 at 4386.239 kb on - strand, within Xcc-8004.4601.1 at 4386.286 kb on + strand, within Xcc-8004.4601.1 at 4386.286 kb on + strand, within Xcc-8004.4601.1 at 4386.286 kb on + strand, within Xcc-8004.4601.1 at 4386.286 kb on + strand, within Xcc-8004.4601.1 at 4386.287 kb on - strand, within Xcc-8004.4601.1 at 4386.287 kb on - strand, within Xcc-8004.4601.1 at 4386.287 kb on - strand, within Xcc-8004.4601.1 at 4386.287 kb on - strand, within Xcc-8004.4601.1 at 4386.287 kb on - strand, within Xcc-8004.4601.1 at 4386.287 kb on - strand, within Xcc-8004.4601.1 at 4386.287 kb on - strand, within Xcc-8004.4601.1 at 4386.287 kb on - strand, within Xcc-8004.4601.1 at 4386.287 kb on - strand, within Xcc-8004.4601.1 at 4386.484 kb on + strand at 4386.484 kb on + strand at 4386.484 kb on + strand at 4386.485 kb on - strand at 4386.485 kb on - strand at 4386.485 kb on - strand at 4386.485 kb on - strand at 4386.485 kb on - strand at 4386.485 kb on - strand at 4386.535 kb on + strand at 4386.535 kb on + strand at 4386.535 kb on + strand at 4386.535 kb on + strand at 4386.536 kb on - strand at 4386.536 kb on - strand at 4386.536 kb on - strand at 4386.680 kb on + strand at 4386.680 kb on + strand at 4386.680 kb on + strand at 4386.680 kb on + strand at 4386.680 kb on + strand at 4386.680 kb on + strand at 4386.680 kb on + strand at 4386.680 kb on + strand at 4386.681 kb on - strand at 4386.681 kb on - strand at 4386.681 kb on - strand at 4386.681 kb on - strand at 4386.697 kb on + strand at 4386.796 kb on + strand, within Xcc-8004.4602.1 at 4386.797 kb on - strand, within Xcc-8004.4602.1 at 4387.027 kb on + strand, within Xcc-8004.4602.1 at 4387.027 kb on + strand, within Xcc-8004.4602.1 at 4387.027 kb on + strand, within Xcc-8004.4602.1 at 4387.028 kb on - strand, within Xcc-8004.4602.1 at 4387.028 kb on - strand, within Xcc-8004.4602.1 at 4387.181 kb on - strand, within Xcc-8004.4602.1 at 4387.181 kb on - strand, within Xcc-8004.4602.1 at 4387.181 kb on - strand, within Xcc-8004.4602.1 at 4387.382 kb on + strand at 4387.382 kb on + strand at 4387.382 kb on + strand at 4387.382 kb on + strand at 4387.382 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Citric Acid 10mM (C) remove 4,385,548 + Xcc-8004.4599.1 0.86 +0.2 4,385,578 + -0.9 4,385,578 + -2.0 4,385,579 - +0.1 4,385,579 - +2.7 4,385,579 - -0.1 4,385,617 + -0.5 4,385,618 - +0.0 4,385,618 - -0.1 4,385,618 - -0.1 4,385,618 - -0.4 4,385,618 - -1.0 4,385,618 - -2.1 4,385,618 - +0.7 4,385,662 - +0.1 4,385,684 - -0.2 4,385,684 - -0.7 4,385,684 - +0.2 4,385,710 + -1.7 4,385,711 - -2.0 4,385,711 - -3.4 4,385,818 + Xcc-8004.4601.1 0.17 -2.3 4,385,819 - Xcc-8004.4601.1 0.17 -1.2 4,385,819 - Xcc-8004.4601.1 0.17 -2.2 4,385,884 + Xcc-8004.4601.1 0.25 -1.3 4,385,884 + Xcc-8004.4601.1 0.25 -2.1 4,385,884 + Xcc-8004.4601.1 0.25 -3.3 4,385,884 + Xcc-8004.4601.1 0.25 -1.0 4,385,884 + Xcc-8004.4601.1 0.25 +0.4 4,385,885 - Xcc-8004.4601.1 0.25 -1.9 4,385,885 - Xcc-8004.4601.1 0.25 -1.8 4,386,143 - Xcc-8004.4601.1 0.58 -0.6 4,386,208 + Xcc-8004.4601.1 0.66 -2.5 4,386,208 + Xcc-8004.4601.1 0.66 -0.6 4,386,238 + Xcc-8004.4601.1 0.69 -2.0 4,386,238 + Xcc-8004.4601.1 0.69 -4.4 4,386,239 - Xcc-8004.4601.1 0.70 -2.0 4,386,239 - Xcc-8004.4601.1 0.70 -1.9 4,386,286 + Xcc-8004.4601.1 0.75 -0.9 4,386,286 + Xcc-8004.4601.1 0.75 -3.3 4,386,286 + Xcc-8004.4601.1 0.75 -2.0 4,386,286 + Xcc-8004.4601.1 0.75 -2.8 4,386,287 - Xcc-8004.4601.1 0.76 -2.8 4,386,287 - Xcc-8004.4601.1 0.76 -4.3 4,386,287 - Xcc-8004.4601.1 0.76 +0.6 4,386,287 - Xcc-8004.4601.1 0.76 -0.7 4,386,287 - Xcc-8004.4601.1 0.76 -0.8 4,386,287 - Xcc-8004.4601.1 0.76 -1.7 4,386,287 - Xcc-8004.4601.1 0.76 -2.1 4,386,287 - Xcc-8004.4601.1 0.76 -0.5 4,386,287 - Xcc-8004.4601.1 0.76 -2.0 4,386,484 + -3.7 4,386,484 + -1.7 4,386,484 + -2.5 4,386,485 - +0.8 4,386,485 - -2.1 4,386,485 - -0.2 4,386,485 - -0.0 4,386,485 - -0.0 4,386,485 - +0.4 4,386,535 + -1.0 4,386,535 + -3.4 4,386,535 + -2.2 4,386,535 + -2.8 4,386,536 - -1.0 4,386,536 - -0.3 4,386,536 - -2.2 4,386,680 + -1.3 4,386,680 + -0.7 4,386,680 + -1.3 4,386,680 + -1.0 4,386,680 + -0.3 4,386,680 + -0.2 4,386,680 + -0.5 4,386,680 + -1.7 4,386,681 - +1.0 4,386,681 - -1.2 4,386,681 - -0.7 4,386,681 - +0.9 4,386,697 + -1.0 4,386,796 + Xcc-8004.4602.1 0.16 -2.4 4,386,797 - Xcc-8004.4602.1 0.16 -2.8 4,387,027 + Xcc-8004.4602.1 0.49 -2.4 4,387,027 + Xcc-8004.4602.1 0.49 -0.8 4,387,027 + Xcc-8004.4602.1 0.49 -0.4 4,387,028 - Xcc-8004.4602.1 0.49 -1.0 4,387,028 - Xcc-8004.4602.1 0.49 -2.4 4,387,181 - Xcc-8004.4602.1 0.71 -1.2 4,387,181 - Xcc-8004.4602.1 0.71 -2.7 4,387,181 - Xcc-8004.4602.1 0.71 -1.5 4,387,382 + -1.9 4,387,382 + -0.6 4,387,382 + -2.3 4,387,382 + -2.6 4,387,382 + -2.1
Or see this region's nucleotide sequence