Experiment: Citric Acid 10mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.4561.1 and Xcc-8004.4562.1 are separated by 44 nucleotides Xcc-8004.4562.1 and Xcc-8004.4563.1 overlap by 7 nucleotides Xcc-8004.4563.1 and Xcc-8004.4566.1 are separated by 484 nucleotides
Xcc-8004.4561.1: Xcc-8004.4561.1 - Sensor histidine kinase, at 4,357,590 to 4,358,831
Xcc-8004.4561.1
Xcc-8004.4562.1: Xcc-8004.4562.1 - Mobile element protein, at 4,358,876 to 4,359,139
Xcc-8004.4562.1
Xcc-8004.4563.1: Xcc-8004.4563.1 - Mobile element protein, at 4,359,133 to 4,359,978
Xcc-8004.4563.1
Xcc-8004.4566.1: Xcc-8004.4566.1 - putative; ORF located using Glimmer/Genemark, at 4,360,463 to 4,361,530
Xcc-8004.4566.1
Position (kb) 4359
4360 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4358.199 kb on + strand, within Xcc-8004.4561.1 at 4358.199 kb on + strand, within Xcc-8004.4561.1 at 4358.200 kb on - strand, within Xcc-8004.4561.1 at 4358.200 kb on - strand, within Xcc-8004.4561.1 at 4358.796 kb on + strand at 4358.830 kb on - strand at 4360.035 kb on + strand at 4360.035 kb on + strand at 4360.207 kb on - strand at 4360.227 kb on - strand at 4360.284 kb on - strand at 4360.331 kb on + strand at 4360.340 kb on + strand at 4360.349 kb on + strand at 4360.653 kb on + strand, within Xcc-8004.4566.1 at 4360.653 kb on + strand, within Xcc-8004.4566.1 at 4360.653 kb on + strand, within Xcc-8004.4566.1 at 4360.742 kb on - strand, within Xcc-8004.4566.1 at 4360.803 kb on + strand, within Xcc-8004.4566.1 at 4360.803 kb on + strand, within Xcc-8004.4566.1 at 4360.804 kb on - strand, within Xcc-8004.4566.1 at 4360.893 kb on + strand, within Xcc-8004.4566.1 at 4360.893 kb on + strand, within Xcc-8004.4566.1 at 4360.924 kb on - strand, within Xcc-8004.4566.1 at 4360.924 kb on - strand, within Xcc-8004.4566.1
Per-strain Table
Position Strand Gene LocusTag Fraction Citric Acid 10mM (C) remove 4,358,199 + Xcc-8004.4561.1 0.49 +1.2 4,358,199 + Xcc-8004.4561.1 0.49 +0.4 4,358,200 - Xcc-8004.4561.1 0.49 +0.8 4,358,200 - Xcc-8004.4561.1 0.49 +1.7 4,358,796 + +1.1 4,358,830 - -0.9 4,360,035 + +1.8 4,360,035 + +0.1 4,360,207 - +1.3 4,360,227 - +0.9 4,360,284 - -1.6 4,360,331 + -0.4 4,360,340 + -2.6 4,360,349 + -1.0 4,360,653 + Xcc-8004.4566.1 0.18 +0.6 4,360,653 + Xcc-8004.4566.1 0.18 +1.0 4,360,653 + Xcc-8004.4566.1 0.18 -1.0 4,360,742 - Xcc-8004.4566.1 0.26 +3.4 4,360,803 + Xcc-8004.4566.1 0.32 +1.4 4,360,803 + Xcc-8004.4566.1 0.32 -1.2 4,360,804 - Xcc-8004.4566.1 0.32 -0.9 4,360,893 + Xcc-8004.4566.1 0.40 +0.8 4,360,893 + Xcc-8004.4566.1 0.40 -1.4 4,360,924 - Xcc-8004.4566.1 0.43 -0.5 4,360,924 - Xcc-8004.4566.1 0.43 -0.2
Or see this region's nucleotide sequence