Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4513.1

Experiment: Citric Acid 10mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4510.1 and Xcc-8004.4513.1 overlap by 4 nucleotidesXcc-8004.4513.1 and Xcc-8004.4514.1 overlap by 4 nucleotides Xcc-8004.4510.1: Xcc-8004.4510.1 - ATP binding component of ABC-transporter, at 4,313,709 to 4,314,995 Xcc-8004.4510.1 Xcc-8004.4513.1: Xcc-8004.4513.1 - O-antigen export system permease protein RfbD, at 4,314,992 to 4,315,864 Xcc-8004.4513.1 Xcc-8004.4514.1: Xcc-8004.4514.1 - Glycosyltransferase, at 4,315,861 to 4,317,246 Xcc-8004.4514.1 Position (kb) 4314 4315 4316Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4314.061 kb on + strand, within Xcc-8004.4510.1at 4314.325 kb on + strand, within Xcc-8004.4510.1at 4314.800 kb on + strand, within Xcc-8004.4510.1at 4314.987 kb on - strandat 4314.987 kb on - strandat 4314.987 kb on - strandat 4314.987 kb on - strandat 4314.987 kb on - strandat 4314.996 kb on - strandat 4315.790 kb on + strandat 4315.791 kb on - strandat 4315.808 kb on + strandat 4315.808 kb on + strandat 4315.808 kb on + strandat 4315.808 kb on + strandat 4315.809 kb on - strandat 4315.809 kb on - strandat 4315.809 kb on - strandat 4315.809 kb on - strandat 4315.809 kb on - strandat 4316.061 kb on - strand, within Xcc-8004.4514.1at 4316.061 kb on - strand, within Xcc-8004.4514.1at 4316.107 kb on - strand, within Xcc-8004.4514.1at 4316.127 kb on + strand, within Xcc-8004.4514.1at 4316.222 kb on + strand, within Xcc-8004.4514.1at 4316.222 kb on + strand, within Xcc-8004.4514.1at 4316.222 kb on + strand, within Xcc-8004.4514.1at 4316.222 kb on + strand, within Xcc-8004.4514.1at 4316.222 kb on + strand, within Xcc-8004.4514.1at 4316.223 kb on - strand, within Xcc-8004.4514.1at 4316.223 kb on - strand, within Xcc-8004.4514.1at 4316.223 kb on - strand, within Xcc-8004.4514.1at 4316.223 kb on - strand, within Xcc-8004.4514.1at 4316.339 kb on + strand, within Xcc-8004.4514.1at 4316.339 kb on + strand, within Xcc-8004.4514.1at 4316.339 kb on + strand, within Xcc-8004.4514.1at 4316.416 kb on + strand, within Xcc-8004.4514.1at 4316.416 kb on + strand, within Xcc-8004.4514.1at 4316.417 kb on - strand, within Xcc-8004.4514.1at 4316.569 kb on - strand, within Xcc-8004.4514.1at 4316.626 kb on + strand, within Xcc-8004.4514.1at 4316.626 kb on + strand, within Xcc-8004.4514.1at 4316.652 kb on + strand, within Xcc-8004.4514.1at 4316.653 kb on - strand, within Xcc-8004.4514.1at 4316.653 kb on - strand, within Xcc-8004.4514.1at 4316.653 kb on - strand, within Xcc-8004.4514.1at 4316.662 kb on + strand, within Xcc-8004.4514.1at 4316.662 kb on + strand, within Xcc-8004.4514.1at 4316.663 kb on - strand, within Xcc-8004.4514.1at 4316.663 kb on - strand, within Xcc-8004.4514.1at 4316.696 kb on + strand, within Xcc-8004.4514.1at 4316.696 kb on + strand, within Xcc-8004.4514.1at 4316.696 kb on + strand, within Xcc-8004.4514.1at 4316.696 kb on + strand, within Xcc-8004.4514.1at 4316.697 kb on - strand, within Xcc-8004.4514.1at 4316.747 kb on + strand, within Xcc-8004.4514.1at 4316.747 kb on + strand, within Xcc-8004.4514.1at 4316.748 kb on - strand, within Xcc-8004.4514.1at 4316.811 kb on + strand, within Xcc-8004.4514.1at 4316.811 kb on + strand, within Xcc-8004.4514.1at 4316.811 kb on + strand, within Xcc-8004.4514.1at 4316.812 kb on - strand, within Xcc-8004.4514.1at 4316.845 kb on - strand, within Xcc-8004.4514.1at 4316.845 kb on - strand, within Xcc-8004.4514.1at 4316.855 kb on + strand, within Xcc-8004.4514.1at 4316.855 kb on + strand, within Xcc-8004.4514.1at 4316.855 kb on + strand, within Xcc-8004.4514.1at 4316.855 kb on + strand, within Xcc-8004.4514.1at 4316.855 kb on + strand, within Xcc-8004.4514.1at 4316.856 kb on - strand, within Xcc-8004.4514.1at 4316.856 kb on - strand, within Xcc-8004.4514.1at 4316.856 kb on - strand, within Xcc-8004.4514.1at 4316.856 kb on - strand, within Xcc-8004.4514.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid 10mM (C)
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4,314,061 + Xcc-8004.4510.1 0.27 -1.3
4,314,325 + Xcc-8004.4510.1 0.48 +1.4
4,314,800 + Xcc-8004.4510.1 0.85 -2.1
4,314,987 - -0.2
4,314,987 - +0.6
4,314,987 - -2.5
4,314,987 - -1.8
4,314,987 - +2.0
4,314,996 - -0.9
4,315,790 + +0.2
4,315,791 - +1.0
4,315,808 + +0.4
4,315,808 + +0.9
4,315,808 + +0.1
4,315,808 + +0.5
4,315,809 - -0.2
4,315,809 - +0.9
4,315,809 - +2.5
4,315,809 - -1.4
4,315,809 - -0.8
4,316,061 - Xcc-8004.4514.1 0.14 +1.8
4,316,061 - Xcc-8004.4514.1 0.14 +2.2
4,316,107 - Xcc-8004.4514.1 0.18 +1.7
4,316,127 + Xcc-8004.4514.1 0.19 +4.6
4,316,222 + Xcc-8004.4514.1 0.26 +2.2
4,316,222 + Xcc-8004.4514.1 0.26 +1.5
4,316,222 + Xcc-8004.4514.1 0.26 +2.5
4,316,222 + Xcc-8004.4514.1 0.26 +1.0
4,316,222 + Xcc-8004.4514.1 0.26 +2.4
4,316,223 - Xcc-8004.4514.1 0.26 +1.2
4,316,223 - Xcc-8004.4514.1 0.26 +1.2
4,316,223 - Xcc-8004.4514.1 0.26 +1.5
4,316,223 - Xcc-8004.4514.1 0.26 -1.4
4,316,339 + Xcc-8004.4514.1 0.34 +0.4
4,316,339 + Xcc-8004.4514.1 0.34 +0.7
4,316,339 + Xcc-8004.4514.1 0.34 +1.7
4,316,416 + Xcc-8004.4514.1 0.40 +2.4
4,316,416 + Xcc-8004.4514.1 0.40 +2.3
4,316,417 - Xcc-8004.4514.1 0.40 -0.6
4,316,569 - Xcc-8004.4514.1 0.51 +1.4
4,316,626 + Xcc-8004.4514.1 0.55 +1.9
4,316,626 + Xcc-8004.4514.1 0.55 +1.9
4,316,652 + Xcc-8004.4514.1 0.57 +0.7
4,316,653 - Xcc-8004.4514.1 0.57 +1.4
4,316,653 - Xcc-8004.4514.1 0.57 +1.2
4,316,653 - Xcc-8004.4514.1 0.57 +1.2
4,316,662 + Xcc-8004.4514.1 0.58 +2.1
4,316,662 + Xcc-8004.4514.1 0.58 +3.4
4,316,663 - Xcc-8004.4514.1 0.58 +1.5
4,316,663 - Xcc-8004.4514.1 0.58 +3.8
4,316,696 + Xcc-8004.4514.1 0.60 +2.6
4,316,696 + Xcc-8004.4514.1 0.60 +2.1
4,316,696 + Xcc-8004.4514.1 0.60 +1.5
4,316,696 + Xcc-8004.4514.1 0.60 +2.1
4,316,697 - Xcc-8004.4514.1 0.60 +1.9
4,316,747 + Xcc-8004.4514.1 0.64 +1.9
4,316,747 + Xcc-8004.4514.1 0.64 +1.7
4,316,748 - Xcc-8004.4514.1 0.64 +1.8
4,316,811 + Xcc-8004.4514.1 0.69 +1.6
4,316,811 + Xcc-8004.4514.1 0.69 +2.8
4,316,811 + Xcc-8004.4514.1 0.69 +1.1
4,316,812 - Xcc-8004.4514.1 0.69 +1.8
4,316,845 - Xcc-8004.4514.1 0.71 -0.4
4,316,845 - Xcc-8004.4514.1 0.71 +1.8
4,316,855 + Xcc-8004.4514.1 0.72 +2.0
4,316,855 + Xcc-8004.4514.1 0.72 -0.7
4,316,855 + Xcc-8004.4514.1 0.72 +1.8
4,316,855 + Xcc-8004.4514.1 0.72 +2.5
4,316,855 + Xcc-8004.4514.1 0.72 +1.6
4,316,856 - Xcc-8004.4514.1 0.72 +2.1
4,316,856 - Xcc-8004.4514.1 0.72 +2.5
4,316,856 - Xcc-8004.4514.1 0.72 +2.9
4,316,856 - Xcc-8004.4514.1 0.72 +1.4

Or see this region's nucleotide sequence