Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4087.1

Experiment: Citric Acid 10mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4085.1 and Xcc-8004.4086.1 overlap by 4 nucleotidesXcc-8004.4086.1 and Xcc-8004.4087.1 are separated by 9 nucleotidesXcc-8004.4087.1 and Xcc-8004.4088.1 are separated by 109 nucleotides Xcc-8004.4085.1: Xcc-8004.4085.1 - Sulfate transport system permease protein CysW, at 3,944,958 to 3,945,911 Xcc-8004.4085.1 Xcc-8004.4086.1: Xcc-8004.4086.1 - Sulfate transport system permease protein CysT, at 3,945,908 to 3,946,762 Xcc-8004.4086.1 Xcc-8004.4087.1: Xcc-8004.4087.1 - Sulfate and thiosulfate binding protein CysP, at 3,946,772 to 3,947,854 Xcc-8004.4087.1 Xcc-8004.4088.1: Xcc-8004.4088.1 - 2-amino-3-ketobutyrate coenzyme A ligase (EC 2.3.1.29), at 3,947,964 to 3,949,172 Xcc-8004.4088.1 Position (kb) 3946 3947 3948Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3945.927 kb on + strandat 3945.952 kb on + strandat 3945.952 kb on + strandat 3945.952 kb on + strandat 3945.952 kb on + strandat 3945.952 kb on + strandat 3945.952 kb on + strandat 3945.953 kb on - strandat 3945.953 kb on - strandat 3945.953 kb on - strandat 3945.953 kb on - strandat 3945.953 kb on - strandat 3946.020 kb on + strand, within Xcc-8004.4086.1at 3946.021 kb on - strand, within Xcc-8004.4086.1at 3946.110 kb on + strand, within Xcc-8004.4086.1at 3946.111 kb on - strand, within Xcc-8004.4086.1at 3946.330 kb on + strand, within Xcc-8004.4086.1at 3946.330 kb on + strand, within Xcc-8004.4086.1at 3946.330 kb on + strand, within Xcc-8004.4086.1at 3946.330 kb on + strand, within Xcc-8004.4086.1at 3946.331 kb on - strand, within Xcc-8004.4086.1at 3946.331 kb on - strand, within Xcc-8004.4086.1at 3946.331 kb on - strand, within Xcc-8004.4086.1at 3946.332 kb on + strand, within Xcc-8004.4086.1at 3946.332 kb on + strand, within Xcc-8004.4086.1at 3946.332 kb on + strand, within Xcc-8004.4086.1at 3946.332 kb on + strand, within Xcc-8004.4086.1at 3946.332 kb on + strand, within Xcc-8004.4086.1at 3946.332 kb on + strand, within Xcc-8004.4086.1at 3946.332 kb on + strand, within Xcc-8004.4086.1at 3946.333 kb on - strand, within Xcc-8004.4086.1at 3946.333 kb on - strand, within Xcc-8004.4086.1at 3946.333 kb on - strand, within Xcc-8004.4086.1at 3946.333 kb on - strand, within Xcc-8004.4086.1at 3946.389 kb on + strand, within Xcc-8004.4086.1at 3946.389 kb on + strand, within Xcc-8004.4086.1at 3946.389 kb on + strand, within Xcc-8004.4086.1at 3946.390 kb on - strand, within Xcc-8004.4086.1at 3946.390 kb on - strand, within Xcc-8004.4086.1at 3946.390 kb on - strand, within Xcc-8004.4086.1at 3946.390 kb on - strand, within Xcc-8004.4086.1at 3946.390 kb on - strand, within Xcc-8004.4086.1at 3946.390 kb on - strand, within Xcc-8004.4086.1at 3946.773 kb on + strandat 3946.773 kb on + strandat 3946.933 kb on - strand, within Xcc-8004.4087.1at 3946.933 kb on - strand, within Xcc-8004.4087.1at 3946.933 kb on - strand, within Xcc-8004.4087.1at 3946.971 kb on + strand, within Xcc-8004.4087.1at 3946.971 kb on + strand, within Xcc-8004.4087.1at 3946.972 kb on - strand, within Xcc-8004.4087.1at 3946.972 kb on - strand, within Xcc-8004.4087.1at 3946.986 kb on + strand, within Xcc-8004.4087.1at 3946.986 kb on + strand, within Xcc-8004.4087.1at 3946.987 kb on - strand, within Xcc-8004.4087.1at 3946.987 kb on - strand, within Xcc-8004.4087.1at 3946.987 kb on - strand, within Xcc-8004.4087.1at 3946.987 kb on - strand, within Xcc-8004.4087.1at 3947.200 kb on + strand, within Xcc-8004.4087.1at 3947.200 kb on + strand, within Xcc-8004.4087.1at 3947.201 kb on - strand, within Xcc-8004.4087.1at 3947.238 kb on + strand, within Xcc-8004.4087.1at 3947.238 kb on + strand, within Xcc-8004.4087.1at 3947.238 kb on + strand, within Xcc-8004.4087.1at 3947.238 kb on + strand, within Xcc-8004.4087.1at 3947.238 kb on + strand, within Xcc-8004.4087.1at 3947.239 kb on - strand, within Xcc-8004.4087.1at 3947.239 kb on - strand, within Xcc-8004.4087.1at 3947.239 kb on - strand, within Xcc-8004.4087.1at 3947.301 kb on + strand, within Xcc-8004.4087.1at 3947.301 kb on + strand, within Xcc-8004.4087.1at 3947.302 kb on - strand, within Xcc-8004.4087.1at 3947.302 kb on - strand, within Xcc-8004.4087.1at 3947.302 kb on - strand, within Xcc-8004.4087.1at 3947.433 kb on + strand, within Xcc-8004.4087.1at 3947.433 kb on + strand, within Xcc-8004.4087.1at 3947.433 kb on + strand, within Xcc-8004.4087.1at 3947.433 kb on + strand, within Xcc-8004.4087.1at 3947.434 kb on - strand, within Xcc-8004.4087.1at 3947.515 kb on - strand, within Xcc-8004.4087.1at 3947.658 kb on + strand, within Xcc-8004.4087.1at 3947.658 kb on + strand, within Xcc-8004.4087.1at 3947.658 kb on + strand, within Xcc-8004.4087.1at 3947.667 kb on + strand, within Xcc-8004.4087.1at 3947.668 kb on - strand, within Xcc-8004.4087.1at 3947.668 kb on - strand, within Xcc-8004.4087.1at 3947.688 kb on + strand, within Xcc-8004.4087.1at 3947.688 kb on + strand, within Xcc-8004.4087.1at 3947.688 kb on + strand, within Xcc-8004.4087.1at 3947.688 kb on + strand, within Xcc-8004.4087.1at 3947.688 kb on + strand, within Xcc-8004.4087.1at 3947.689 kb on - strand, within Xcc-8004.4087.1at 3947.689 kb on - strand, within Xcc-8004.4087.1at 3947.689 kb on - strand, within Xcc-8004.4087.1at 3947.689 kb on - strand, within Xcc-8004.4087.1at 3947.689 kb on - strand, within Xcc-8004.4087.1at 3947.689 kb on - strand, within Xcc-8004.4087.1at 3947.767 kb on + strandat 3947.768 kb on - strandat 3947.888 kb on - strandat 3947.888 kb on - strandat 3947.888 kb on - strandat 3947.907 kb on + strandat 3947.907 kb on + strandat 3947.907 kb on + strandat 3947.907 kb on + strandat 3947.907 kb on + strandat 3947.907 kb on + strandat 3947.907 kb on + strandat 3947.907 kb on + strandat 3947.908 kb on - strandat 3947.908 kb on - strandat 3947.908 kb on - strandat 3947.908 kb on - strandat 3947.908 kb on - strandat 3947.908 kb on - strandat 3947.913 kb on + strandat 3947.914 kb on - strandat 3947.914 kb on - strandat 3947.914 kb on - strandat 3947.914 kb on - strandat 3947.931 kb on - strandat 3947.998 kb on - strandat 3947.998 kb on - strandat 3948.126 kb on + strand, within Xcc-8004.4088.1at 3948.126 kb on + strand, within Xcc-8004.4088.1at 3948.126 kb on + strand, within Xcc-8004.4088.1at 3948.126 kb on + strand, within Xcc-8004.4088.1at 3948.126 kb on + strand, within Xcc-8004.4088.1at 3948.126 kb on + strand, within Xcc-8004.4088.1at 3948.126 kb on + strand, within Xcc-8004.4088.1at 3948.126 kb on + strand, within Xcc-8004.4088.1at 3948.126 kb on + strand, within Xcc-8004.4088.1at 3948.126 kb on + strand, within Xcc-8004.4088.1at 3948.127 kb on - strand, within Xcc-8004.4088.1at 3948.127 kb on - strand, within Xcc-8004.4088.1at 3948.127 kb on - strand, within Xcc-8004.4088.1at 3948.127 kb on - strand, within Xcc-8004.4088.1at 3948.127 kb on - strand, within Xcc-8004.4088.1at 3948.127 kb on - strand, within Xcc-8004.4088.1at 3948.127 kb on - strand, within Xcc-8004.4088.1at 3948.127 kb on - strand, within Xcc-8004.4088.1at 3948.294 kb on + strand, within Xcc-8004.4088.1at 3948.295 kb on - strand, within Xcc-8004.4088.1at 3948.579 kb on + strand, within Xcc-8004.4088.1at 3948.579 kb on + strand, within Xcc-8004.4088.1at 3948.579 kb on + strand, within Xcc-8004.4088.1at 3948.579 kb on + strand, within Xcc-8004.4088.1at 3948.579 kb on + strand, within Xcc-8004.4088.1at 3948.579 kb on + strand, within Xcc-8004.4088.1at 3948.580 kb on - strand, within Xcc-8004.4088.1at 3948.580 kb on - strand, within Xcc-8004.4088.1at 3948.580 kb on - strand, within Xcc-8004.4088.1at 3948.678 kb on + strand, within Xcc-8004.4088.1at 3948.681 kb on - strand, within Xcc-8004.4088.1at 3948.783 kb on + strand, within Xcc-8004.4088.1at 3948.783 kb on + strand, within Xcc-8004.4088.1at 3948.784 kb on - strand, within Xcc-8004.4088.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid 10mM (C)
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3,945,927 + -3.1
3,945,952 + +1.8
3,945,952 + -1.2
3,945,952 + -2.4
3,945,952 + -3.6
3,945,952 + -1.4
3,945,952 + -2.1
3,945,953 - -0.8
3,945,953 - -1.0
3,945,953 - -1.8
3,945,953 - -0.7
3,945,953 - -3.9
3,946,020 + Xcc-8004.4086.1 0.13 -3.0
3,946,021 - Xcc-8004.4086.1 0.13 -2.1
3,946,110 + Xcc-8004.4086.1 0.24 -0.9
3,946,111 - Xcc-8004.4086.1 0.24 -2.2
3,946,330 + Xcc-8004.4086.1 0.49 -2.8
3,946,330 + Xcc-8004.4086.1 0.49 -2.8
3,946,330 + Xcc-8004.4086.1 0.49 -3.3
3,946,330 + Xcc-8004.4086.1 0.49 -3.0
3,946,331 - Xcc-8004.4086.1 0.49 -2.7
3,946,331 - Xcc-8004.4086.1 0.49 -2.3
3,946,331 - Xcc-8004.4086.1 0.49 -3.1
3,946,332 + Xcc-8004.4086.1 0.50 -2.5
3,946,332 + Xcc-8004.4086.1 0.50 -1.3
3,946,332 + Xcc-8004.4086.1 0.50 -2.1
3,946,332 + Xcc-8004.4086.1 0.50 -2.4
3,946,332 + Xcc-8004.4086.1 0.50 -2.6
3,946,332 + Xcc-8004.4086.1 0.50 -3.4
3,946,332 + Xcc-8004.4086.1 0.50 -2.6
3,946,333 - Xcc-8004.4086.1 0.50 -3.1
3,946,333 - Xcc-8004.4086.1 0.50 -0.2
3,946,333 - Xcc-8004.4086.1 0.50 -2.7
3,946,333 - Xcc-8004.4086.1 0.50 -2.4
3,946,389 + Xcc-8004.4086.1 0.56 -2.4
3,946,389 + Xcc-8004.4086.1 0.56 -1.7
3,946,389 + Xcc-8004.4086.1 0.56 -1.8
3,946,390 - Xcc-8004.4086.1 0.56 -1.9
3,946,390 - Xcc-8004.4086.1 0.56 -2.9
3,946,390 - Xcc-8004.4086.1 0.56 -2.6
3,946,390 - Xcc-8004.4086.1 0.56 -2.0
3,946,390 - Xcc-8004.4086.1 0.56 -2.6
3,946,390 - Xcc-8004.4086.1 0.56 +0.0
3,946,773 + -2.3
3,946,773 + -2.8
3,946,933 - Xcc-8004.4087.1 0.15 -0.8
3,946,933 - Xcc-8004.4087.1 0.15 +0.8
3,946,933 - Xcc-8004.4087.1 0.15 -1.1
3,946,971 + Xcc-8004.4087.1 0.18 -2.4
3,946,971 + Xcc-8004.4087.1 0.18 -3.4
3,946,972 - Xcc-8004.4087.1 0.18 -1.7
3,946,972 - Xcc-8004.4087.1 0.18 -0.5
3,946,986 + Xcc-8004.4087.1 0.20 -1.7
3,946,986 + Xcc-8004.4087.1 0.20 -1.9
3,946,987 - Xcc-8004.4087.1 0.20 -2.3
3,946,987 - Xcc-8004.4087.1 0.20 -2.0
3,946,987 - Xcc-8004.4087.1 0.20 -4.0
3,946,987 - Xcc-8004.4087.1 0.20 -1.1
3,947,200 + Xcc-8004.4087.1 0.40 -2.8
3,947,200 + Xcc-8004.4087.1 0.40 -1.8
3,947,201 - Xcc-8004.4087.1 0.40 -2.7
3,947,238 + Xcc-8004.4087.1 0.43 -0.2
3,947,238 + Xcc-8004.4087.1 0.43 -3.2
3,947,238 + Xcc-8004.4087.1 0.43 -2.8
3,947,238 + Xcc-8004.4087.1 0.43 -2.1
3,947,238 + Xcc-8004.4087.1 0.43 +0.8
3,947,239 - Xcc-8004.4087.1 0.43 +1.8
3,947,239 - Xcc-8004.4087.1 0.43 -4.2
3,947,239 - Xcc-8004.4087.1 0.43 +1.2
3,947,301 + Xcc-8004.4087.1 0.49 -3.8
3,947,301 + Xcc-8004.4087.1 0.49 -3.4
3,947,302 - Xcc-8004.4087.1 0.49 -0.5
3,947,302 - Xcc-8004.4087.1 0.49 -2.9
3,947,302 - Xcc-8004.4087.1 0.49 -3.1
3,947,433 + Xcc-8004.4087.1 0.61 -3.0
3,947,433 + Xcc-8004.4087.1 0.61 -0.7
3,947,433 + Xcc-8004.4087.1 0.61 -1.9
3,947,433 + Xcc-8004.4087.1 0.61 -1.4
3,947,434 - Xcc-8004.4087.1 0.61 -1.9
3,947,515 - Xcc-8004.4087.1 0.69 -0.4
3,947,658 + Xcc-8004.4087.1 0.82 +0.2
3,947,658 + Xcc-8004.4087.1 0.82 -2.9
3,947,658 + Xcc-8004.4087.1 0.82 -3.0
3,947,667 + Xcc-8004.4087.1 0.83 -0.2
3,947,668 - Xcc-8004.4087.1 0.83 -2.8
3,947,668 - Xcc-8004.4087.1 0.83 -2.8
3,947,688 + Xcc-8004.4087.1 0.85 -1.9
3,947,688 + Xcc-8004.4087.1 0.85 -0.8
3,947,688 + Xcc-8004.4087.1 0.85 -2.6
3,947,688 + Xcc-8004.4087.1 0.85 -2.3
3,947,688 + Xcc-8004.4087.1 0.85 -2.1
3,947,689 - Xcc-8004.4087.1 0.85 -0.5
3,947,689 - Xcc-8004.4087.1 0.85 -1.5
3,947,689 - Xcc-8004.4087.1 0.85 -1.5
3,947,689 - Xcc-8004.4087.1 0.85 -1.7
3,947,689 - Xcc-8004.4087.1 0.85 -1.4
3,947,689 - Xcc-8004.4087.1 0.85 -2.6
3,947,767 + +0.2
3,947,768 - -1.7
3,947,888 - -1.3
3,947,888 - -2.4
3,947,888 - -2.6
3,947,907 + +0.4
3,947,907 + +0.4
3,947,907 + -1.7
3,947,907 + -1.0
3,947,907 + -0.5
3,947,907 + -0.3
3,947,907 + +0.6
3,947,907 + -0.2
3,947,908 - +0.1
3,947,908 - +0.9
3,947,908 - +1.2
3,947,908 - -0.6
3,947,908 - +1.0
3,947,908 - -0.4
3,947,913 + -0.1
3,947,914 - +0.9
3,947,914 - +1.2
3,947,914 - +1.8
3,947,914 - -0.2
3,947,931 - -0.5
3,947,998 - -1.4
3,947,998 - +0.2
3,948,126 + Xcc-8004.4088.1 0.13 +1.3
3,948,126 + Xcc-8004.4088.1 0.13 +0.9
3,948,126 + Xcc-8004.4088.1 0.13 -0.4
3,948,126 + Xcc-8004.4088.1 0.13 -1.8
3,948,126 + Xcc-8004.4088.1 0.13 +0.8
3,948,126 + Xcc-8004.4088.1 0.13 +0.5
3,948,126 + Xcc-8004.4088.1 0.13 -1.8
3,948,126 + Xcc-8004.4088.1 0.13 -0.2
3,948,126 + Xcc-8004.4088.1 0.13 +0.4
3,948,126 + Xcc-8004.4088.1 0.13 -0.4
3,948,127 - Xcc-8004.4088.1 0.13 +0.4
3,948,127 - Xcc-8004.4088.1 0.13 -0.4
3,948,127 - Xcc-8004.4088.1 0.13 -0.8
3,948,127 - Xcc-8004.4088.1 0.13 +1.6
3,948,127 - Xcc-8004.4088.1 0.13 +0.6
3,948,127 - Xcc-8004.4088.1 0.13 +1.0
3,948,127 - Xcc-8004.4088.1 0.13 -1.5
3,948,127 - Xcc-8004.4088.1 0.13 +0.6
3,948,294 + Xcc-8004.4088.1 0.27 -2.4
3,948,295 - Xcc-8004.4088.1 0.27 +2.1
3,948,579 + Xcc-8004.4088.1 0.51 +0.1
3,948,579 + Xcc-8004.4088.1 0.51 +0.3
3,948,579 + Xcc-8004.4088.1 0.51 -0.8
3,948,579 + Xcc-8004.4088.1 0.51 +1.4
3,948,579 + Xcc-8004.4088.1 0.51 -0.4
3,948,579 + Xcc-8004.4088.1 0.51 +0.7
3,948,580 - Xcc-8004.4088.1 0.51 -0.7
3,948,580 - Xcc-8004.4088.1 0.51 -0.4
3,948,580 - Xcc-8004.4088.1 0.51 -0.2
3,948,678 + Xcc-8004.4088.1 0.59 -0.9
3,948,681 - Xcc-8004.4088.1 0.59 -0.6
3,948,783 + Xcc-8004.4088.1 0.68 +0.8
3,948,783 + Xcc-8004.4088.1 0.68 +1.6
3,948,784 - Xcc-8004.4088.1 0.68 -1.0

Or see this region's nucleotide sequence