Experiment: Citric Acid 10mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.367.1 and Xcc-8004.368.1 are separated by 8 nucleotides Xcc-8004.368.1 and Xcc-8004.369.1 are separated by 6 nucleotides Xcc-8004.369.1 and Xcc-8004.370.1 are separated by 19 nucleotides Xcc-8004.370.1 and Xcc-8004.371.1 are separated by 474 nucleotides Xcc-8004.371.1 and Xcc-8004.372.1 are separated by 427 nucleotides
Xcc-8004.367.1: Xcc-8004.367.1 - putative; ORF located using Glimmer/Genemark, at 351,589 to 351,954
Xcc-8004.367.1
Xcc-8004.368.1: Xcc-8004.368.1 - putative; ORF located using Glimmer/Genemark, at 351,963 to 352,130
Xcc-8004.368.1
Xcc-8004.369.1: Xcc-8004.369.1 - hypothetical protein, at 352,137 to 352,241
Xcc-8004.369.1
Xcc-8004.370.1: Xcc-8004.370.1 - hypothetical protein, at 352,261 to 352,422
Xcc-8004.370.1
Xcc-8004.371.1: Xcc-8004.371.1 - transcriptional regulator, at 352,897 to 354,093
Xcc-8004.371.1
Xcc-8004.372.1: Xcc-8004.372.1 - Endonuclease/Exonuclease/phosphatase family protein, at 354,521 to 355,282
Xcc-8004.372.1
Position (kb) 352
353
354
355 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 351.900 kb on + strand, within Xcc-8004.367.1 at 351.965 kb on - strand at 352.087 kb on - strand, within Xcc-8004.368.1 at 352.582 kb on + strand at 352.582 kb on + strand at 352.582 kb on + strand at 352.583 kb on - strand at 352.644 kb on - strand at 352.669 kb on - strand at 352.669 kb on - strand at 352.689 kb on + strand at 352.690 kb on - strand at 352.757 kb on - strand at 352.851 kb on + strand at 353.139 kb on + strand, within Xcc-8004.371.1 at 353.139 kb on + strand, within Xcc-8004.371.1 at 353.354 kb on - strand, within Xcc-8004.371.1 at 353.398 kb on - strand, within Xcc-8004.371.1 at 353.401 kb on + strand, within Xcc-8004.371.1 at 353.401 kb on + strand, within Xcc-8004.371.1 at 353.401 kb on + strand, within Xcc-8004.371.1 at 353.401 kb on + strand, within Xcc-8004.371.1 at 353.401 kb on + strand, within Xcc-8004.371.1 at 353.402 kb on - strand, within Xcc-8004.371.1 at 353.402 kb on - strand, within Xcc-8004.371.1 at 353.402 kb on - strand, within Xcc-8004.371.1 at 353.402 kb on - strand, within Xcc-8004.371.1 at 353.402 kb on - strand, within Xcc-8004.371.1 at 353.613 kb on + strand, within Xcc-8004.371.1 at 353.617 kb on + strand, within Xcc-8004.371.1 at 353.618 kb on - strand, within Xcc-8004.371.1 at 353.657 kb on + strand, within Xcc-8004.371.1 at 353.657 kb on + strand, within Xcc-8004.371.1 at 353.657 kb on + strand, within Xcc-8004.371.1 at 353.657 kb on + strand, within Xcc-8004.371.1 at 353.658 kb on - strand, within Xcc-8004.371.1 at 353.658 kb on - strand, within Xcc-8004.371.1 at 353.658 kb on - strand, within Xcc-8004.371.1 at 353.658 kb on - strand, within Xcc-8004.371.1 at 353.713 kb on + strand, within Xcc-8004.371.1 at 353.713 kb on + strand, within Xcc-8004.371.1 at 353.713 kb on + strand, within Xcc-8004.371.1 at 353.713 kb on + strand, within Xcc-8004.371.1 at 353.713 kb on + strand, within Xcc-8004.371.1 at 353.713 kb on + strand, within Xcc-8004.371.1 at 353.713 kb on + strand, within Xcc-8004.371.1 at 353.714 kb on - strand, within Xcc-8004.371.1 at 353.714 kb on - strand, within Xcc-8004.371.1 at 354.138 kb on + strand at 354.146 kb on - strand at 354.171 kb on + strand at 354.171 kb on + strand at 354.172 kb on - strand at 354.220 kb on + strand at 354.221 kb on - strand at 354.328 kb on + strand at 354.328 kb on + strand at 354.328 kb on + strand at 354.328 kb on + strand at 354.329 kb on - strand at 354.329 kb on - strand at 354.352 kb on + strand at 354.353 kb on - strand at 354.353 kb on - strand at 354.356 kb on + strand at 354.356 kb on + strand at 354.357 kb on - strand at 354.371 kb on + strand at 354.371 kb on + strand at 354.732 kb on - strand, within Xcc-8004.372.1 at 354.737 kb on + strand, within Xcc-8004.372.1 at 354.738 kb on - strand, within Xcc-8004.372.1 at 354.738 kb on - strand, within Xcc-8004.372.1 at 354.770 kb on + strand, within Xcc-8004.372.1 at 354.888 kb on + strand, within Xcc-8004.372.1 at 354.889 kb on - strand, within Xcc-8004.372.1 at 354.930 kb on + strand, within Xcc-8004.372.1 at 354.931 kb on - strand, within Xcc-8004.372.1
Per-strain Table
Position Strand Gene LocusTag Fraction Citric Acid 10mM (C) remove 351,900 + Xcc-8004.367.1 0.85 +3.2 351,965 - -3.5 352,087 - Xcc-8004.368.1 0.74 +0.6 352,582 + +1.3 352,582 + +0.0 352,582 + -0.4 352,583 - +0.1 352,644 - +0.2 352,669 - -1.0 352,669 - -1.6 352,689 + -0.3 352,690 - +0.6 352,757 - -0.5 352,851 + -1.0 353,139 + Xcc-8004.371.1 0.20 +0.4 353,139 + Xcc-8004.371.1 0.20 -0.4 353,354 - Xcc-8004.371.1 0.38 -0.4 353,398 - Xcc-8004.371.1 0.42 -1.0 353,401 + Xcc-8004.371.1 0.42 +0.6 353,401 + Xcc-8004.371.1 0.42 -0.6 353,401 + Xcc-8004.371.1 0.42 -1.3 353,401 + Xcc-8004.371.1 0.42 +1.2 353,401 + Xcc-8004.371.1 0.42 -0.1 353,402 - Xcc-8004.371.1 0.42 -0.7 353,402 - Xcc-8004.371.1 0.42 -0.2 353,402 - Xcc-8004.371.1 0.42 -1.2 353,402 - Xcc-8004.371.1 0.42 +0.3 353,402 - Xcc-8004.371.1 0.42 -0.7 353,613 + Xcc-8004.371.1 0.60 +0.6 353,617 + Xcc-8004.371.1 0.60 -0.2 353,618 - Xcc-8004.371.1 0.60 -1.6 353,657 + Xcc-8004.371.1 0.63 -0.3 353,657 + Xcc-8004.371.1 0.63 +3.0 353,657 + Xcc-8004.371.1 0.63 +0.4 353,657 + Xcc-8004.371.1 0.63 +0.8 353,658 - Xcc-8004.371.1 0.64 -2.7 353,658 - Xcc-8004.371.1 0.64 +0.1 353,658 - Xcc-8004.371.1 0.64 +0.7 353,658 - Xcc-8004.371.1 0.64 +1.2 353,713 + Xcc-8004.371.1 0.68 +0.5 353,713 + Xcc-8004.371.1 0.68 +0.4 353,713 + Xcc-8004.371.1 0.68 +1.0 353,713 + Xcc-8004.371.1 0.68 +1.2 353,713 + Xcc-8004.371.1 0.68 -1.6 353,713 + Xcc-8004.371.1 0.68 +1.1 353,713 + Xcc-8004.371.1 0.68 -1.2 353,714 - Xcc-8004.371.1 0.68 +0.9 353,714 - Xcc-8004.371.1 0.68 +0.4 354,138 + +0.3 354,146 - +0.6 354,171 + +1.3 354,171 + -2.0 354,172 - -0.2 354,220 + -0.2 354,221 - -2.2 354,328 + +0.9 354,328 + +0.3 354,328 + +0.1 354,328 + -0.0 354,329 - -0.6 354,329 - +1.2 354,352 + -0.3 354,353 - -0.5 354,353 - -0.9 354,356 + +0.7 354,356 + -2.2 354,357 - -1.9 354,371 + -1.1 354,371 + +2.2 354,732 - Xcc-8004.372.1 0.28 +1.3 354,737 + Xcc-8004.372.1 0.28 -0.2 354,738 - Xcc-8004.372.1 0.28 -0.2 354,738 - Xcc-8004.372.1 0.28 -2.9 354,770 + Xcc-8004.372.1 0.33 -1.5 354,888 + Xcc-8004.372.1 0.48 -1.6 354,889 - Xcc-8004.372.1 0.48 -1.4 354,930 + Xcc-8004.372.1 0.54 +0.2 354,931 - Xcc-8004.372.1 0.54 -1.6
Or see this region's nucleotide sequence