Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3633.1

Experiment: Citric Acid 10mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3631.1 and Xcc-8004.3632.1 are separated by 189 nucleotidesXcc-8004.3632.1 and Xcc-8004.3633.1 are separated by 101 nucleotidesXcc-8004.3633.1 and Xcc-8004.3634.1 are separated by 11 nucleotidesXcc-8004.3634.1 and Xcc-8004.3635.1 overlap by 4 nucleotides Xcc-8004.3631.1: Xcc-8004.3631.1 - Putative heat shock protein YegD, at 3,515,582 to 3,516,964 Xcc-8004.3631.1 Xcc-8004.3632.1: Xcc-8004.3632.1 - FIG01209689: hypothetical protein, at 3,517,154 to 3,517,339 Xcc-8004.3632.1 Xcc-8004.3633.1: Xcc-8004.3633.1 - FIG01210834: hypothetical protein, at 3,517,441 to 3,518,325 Xcc-8004.3633.1 Xcc-8004.3634.1: Xcc-8004.3634.1 - FIG01111117: hypothetical protein, at 3,518,337 to 3,518,870 Xcc-8004.3634.1 Xcc-8004.3635.1: Xcc-8004.3635.1 - RNA polymerase ECF-type sigma factor, at 3,518,867 to 3,519,502 Xcc-8004.3635.1 Position (kb) 3517 3518 3519Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3516.473 kb on + strand, within Xcc-8004.3631.1at 3516.473 kb on + strand, within Xcc-8004.3631.1at 3516.473 kb on + strand, within Xcc-8004.3631.1at 3516.473 kb on + strand, within Xcc-8004.3631.1at 3516.473 kb on + strand, within Xcc-8004.3631.1at 3516.474 kb on - strand, within Xcc-8004.3631.1at 3516.474 kb on - strand, within Xcc-8004.3631.1at 3516.474 kb on - strand, within Xcc-8004.3631.1at 3516.474 kb on - strand, within Xcc-8004.3631.1at 3516.533 kb on + strand, within Xcc-8004.3631.1at 3516.533 kb on + strand, within Xcc-8004.3631.1at 3516.533 kb on + strand, within Xcc-8004.3631.1at 3516.533 kb on + strand, within Xcc-8004.3631.1at 3516.533 kb on + strand, within Xcc-8004.3631.1at 3516.533 kb on + strand, within Xcc-8004.3631.1at 3516.534 kb on - strand, within Xcc-8004.3631.1at 3516.534 kb on - strand, within Xcc-8004.3631.1at 3516.534 kb on - strand, within Xcc-8004.3631.1at 3516.534 kb on - strand, within Xcc-8004.3631.1at 3516.534 kb on - strand, within Xcc-8004.3631.1at 3516.534 kb on - strand, within Xcc-8004.3631.1at 3516.592 kb on + strand, within Xcc-8004.3631.1at 3516.731 kb on - strand, within Xcc-8004.3631.1at 3516.734 kb on + strand, within Xcc-8004.3631.1at 3516.734 kb on + strand, within Xcc-8004.3631.1at 3516.734 kb on + strand, within Xcc-8004.3631.1at 3516.734 kb on + strand, within Xcc-8004.3631.1at 3516.734 kb on + strand, within Xcc-8004.3631.1at 3516.735 kb on - strand, within Xcc-8004.3631.1at 3516.833 kb on + strandat 3516.833 kb on + strandat 3516.834 kb on - strandat 3516.834 kb on - strandat 3516.834 kb on - strandat 3516.835 kb on + strandat 3516.963 kb on - strandat 3516.973 kb on + strandat 3516.973 kb on + strandat 3516.974 kb on - strandat 3516.974 kb on - strandat 3516.974 kb on - strandat 3516.987 kb on + strandat 3516.988 kb on - strandat 3516.988 kb on - strandat 3517.104 kb on + strandat 3517.109 kb on + strandat 3517.142 kb on - strandat 3517.210 kb on + strand, within Xcc-8004.3632.1at 3517.210 kb on + strand, within Xcc-8004.3632.1at 3517.210 kb on + strand, within Xcc-8004.3632.1at 3517.211 kb on - strand, within Xcc-8004.3632.1at 3517.211 kb on - strand, within Xcc-8004.3632.1at 3517.211 kb on - strand, within Xcc-8004.3632.1at 3517.238 kb on - strand, within Xcc-8004.3632.1at 3517.452 kb on - strandat 3517.541 kb on + strand, within Xcc-8004.3633.1at 3517.541 kb on + strand, within Xcc-8004.3633.1at 3517.542 kb on - strand, within Xcc-8004.3633.1at 3517.542 kb on - strand, within Xcc-8004.3633.1at 3517.597 kb on + strand, within Xcc-8004.3633.1at 3517.597 kb on + strand, within Xcc-8004.3633.1at 3517.597 kb on + strand, within Xcc-8004.3633.1at 3517.597 kb on + strand, within Xcc-8004.3633.1at 3517.597 kb on + strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.598 kb on - strand, within Xcc-8004.3633.1at 3517.717 kb on + strand, within Xcc-8004.3633.1at 3517.717 kb on + strand, within Xcc-8004.3633.1at 3517.717 kb on + strand, within Xcc-8004.3633.1at 3517.717 kb on + strand, within Xcc-8004.3633.1at 3517.718 kb on - strand, within Xcc-8004.3633.1at 3518.079 kb on - strand, within Xcc-8004.3633.1at 3518.079 kb on - strand, within Xcc-8004.3633.1at 3518.079 kb on - strand, within Xcc-8004.3633.1at 3518.188 kb on + strand, within Xcc-8004.3633.1at 3518.188 kb on + strand, within Xcc-8004.3633.1at 3518.188 kb on + strand, within Xcc-8004.3633.1at 3518.188 kb on + strand, within Xcc-8004.3633.1at 3518.189 kb on - strand, within Xcc-8004.3633.1at 3518.308 kb on + strandat 3518.309 kb on - strandat 3518.309 kb on - strandat 3518.309 kb on - strandat 3518.309 kb on - strandat 3518.350 kb on + strandat 3518.350 kb on + strandat 3518.350 kb on + strandat 3518.350 kb on + strandat 3518.350 kb on + strandat 3518.350 kb on + strandat 3518.351 kb on - strandat 3518.351 kb on - strandat 3518.351 kb on - strandat 3518.351 kb on - strandat 3518.398 kb on + strand, within Xcc-8004.3634.1at 3518.398 kb on + strand, within Xcc-8004.3634.1at 3518.398 kb on + strand, within Xcc-8004.3634.1at 3518.399 kb on - strand, within Xcc-8004.3634.1at 3518.399 kb on - strand, within Xcc-8004.3634.1at 3518.399 kb on - strand, within Xcc-8004.3634.1at 3518.399 kb on - strand, within Xcc-8004.3634.1at 3518.399 kb on - strand, within Xcc-8004.3634.1at 3518.551 kb on + strand, within Xcc-8004.3634.1at 3518.552 kb on - strand, within Xcc-8004.3634.1at 3518.630 kb on + strand, within Xcc-8004.3634.1at 3518.630 kb on + strand, within Xcc-8004.3634.1at 3518.630 kb on + strand, within Xcc-8004.3634.1at 3518.630 kb on + strand, within Xcc-8004.3634.1at 3518.630 kb on + strand, within Xcc-8004.3634.1at 3518.630 kb on + strand, within Xcc-8004.3634.1at 3518.631 kb on - strand, within Xcc-8004.3634.1at 3518.870 kb on + strandat 3518.870 kb on + strandat 3518.871 kb on - strandat 3518.871 kb on - strandat 3519.312 kb on + strand, within Xcc-8004.3635.1at 3519.312 kb on + strand, within Xcc-8004.3635.1at 3519.313 kb on - strand, within Xcc-8004.3635.1at 3519.313 kb on - strand, within Xcc-8004.3635.1at 3519.313 kb on - strand, within Xcc-8004.3635.1at 3519.313 kb on - strand, within Xcc-8004.3635.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid 10mM (C)
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3,516,473 + Xcc-8004.3631.1 0.64 +1.3
3,516,473 + Xcc-8004.3631.1 0.64 +0.8
3,516,473 + Xcc-8004.3631.1 0.64 -0.4
3,516,473 + Xcc-8004.3631.1 0.64 -0.7
3,516,473 + Xcc-8004.3631.1 0.64 +1.5
3,516,474 - Xcc-8004.3631.1 0.64 -0.8
3,516,474 - Xcc-8004.3631.1 0.64 -1.0
3,516,474 - Xcc-8004.3631.1 0.64 -0.9
3,516,474 - Xcc-8004.3631.1 0.64 -1.0
3,516,533 + Xcc-8004.3631.1 0.69 -1.9
3,516,533 + Xcc-8004.3631.1 0.69 -1.4
3,516,533 + Xcc-8004.3631.1 0.69 -0.9
3,516,533 + Xcc-8004.3631.1 0.69 -1.4
3,516,533 + Xcc-8004.3631.1 0.69 -0.4
3,516,533 + Xcc-8004.3631.1 0.69 +0.9
3,516,534 - Xcc-8004.3631.1 0.69 +1.8
3,516,534 - Xcc-8004.3631.1 0.69 +2.2
3,516,534 - Xcc-8004.3631.1 0.69 -0.5
3,516,534 - Xcc-8004.3631.1 0.69 +0.3
3,516,534 - Xcc-8004.3631.1 0.69 -2.4
3,516,534 - Xcc-8004.3631.1 0.69 -1.0
3,516,592 + Xcc-8004.3631.1 0.73 -1.0
3,516,731 - Xcc-8004.3631.1 0.83 +0.4
3,516,734 + Xcc-8004.3631.1 0.83 +0.6
3,516,734 + Xcc-8004.3631.1 0.83 -1.9
3,516,734 + Xcc-8004.3631.1 0.83 +0.8
3,516,734 + Xcc-8004.3631.1 0.83 +1.8
3,516,734 + Xcc-8004.3631.1 0.83 -0.9
3,516,735 - Xcc-8004.3631.1 0.83 -1.0
3,516,833 + -1.8
3,516,833 + -0.5
3,516,834 - +1.7
3,516,834 - +0.5
3,516,834 - -2.2
3,516,835 + +0.5
3,516,963 - -1.3
3,516,973 + +0.6
3,516,973 + +0.8
3,516,974 - +1.1
3,516,974 - -1.8
3,516,974 - +0.3
3,516,987 + +0.1
3,516,988 - +0.2
3,516,988 - -1.3
3,517,104 + -0.0
3,517,109 + -1.5
3,517,142 - -2.7
3,517,210 + Xcc-8004.3632.1 0.30 -2.8
3,517,210 + Xcc-8004.3632.1 0.30 -1.7
3,517,210 + Xcc-8004.3632.1 0.30 -1.2
3,517,211 - Xcc-8004.3632.1 0.31 -1.8
3,517,211 - Xcc-8004.3632.1 0.31 -1.2
3,517,211 - Xcc-8004.3632.1 0.31 +1.2
3,517,238 - Xcc-8004.3632.1 0.45 -0.5
3,517,452 - -0.0
3,517,541 + Xcc-8004.3633.1 0.11 -1.6
3,517,541 + Xcc-8004.3633.1 0.11 -2.1
3,517,542 - Xcc-8004.3633.1 0.11 -1.7
3,517,542 - Xcc-8004.3633.1 0.11 -1.2
3,517,597 + Xcc-8004.3633.1 0.18 +1.7
3,517,597 + Xcc-8004.3633.1 0.18 +0.3
3,517,597 + Xcc-8004.3633.1 0.18 -0.4
3,517,597 + Xcc-8004.3633.1 0.18 +3.4
3,517,597 + Xcc-8004.3633.1 0.18 +1.0
3,517,598 - Xcc-8004.3633.1 0.18 -0.2
3,517,598 - Xcc-8004.3633.1 0.18 +0.2
3,517,598 - Xcc-8004.3633.1 0.18 -0.7
3,517,598 - Xcc-8004.3633.1 0.18 +0.4
3,517,598 - Xcc-8004.3633.1 0.18 +0.5
3,517,598 - Xcc-8004.3633.1 0.18 +1.1
3,517,598 - Xcc-8004.3633.1 0.18 -1.5
3,517,598 - Xcc-8004.3633.1 0.18 +0.2
3,517,598 - Xcc-8004.3633.1 0.18 -2.2
3,517,598 - Xcc-8004.3633.1 0.18 +0.1
3,517,717 + Xcc-8004.3633.1 0.31 +4.1
3,517,717 + Xcc-8004.3633.1 0.31 -0.1
3,517,717 + Xcc-8004.3633.1 0.31 -1.4
3,517,717 + Xcc-8004.3633.1 0.31 +0.5
3,517,718 - Xcc-8004.3633.1 0.31 -0.8
3,518,079 - Xcc-8004.3633.1 0.72 +0.7
3,518,079 - Xcc-8004.3633.1 0.72 -0.4
3,518,079 - Xcc-8004.3633.1 0.72 -1.4
3,518,188 + Xcc-8004.3633.1 0.84 -0.7
3,518,188 + Xcc-8004.3633.1 0.84 +0.6
3,518,188 + Xcc-8004.3633.1 0.84 +1.3
3,518,188 + Xcc-8004.3633.1 0.84 +1.4
3,518,189 - Xcc-8004.3633.1 0.85 +0.5
3,518,308 + +0.4
3,518,309 - -0.5
3,518,309 - -0.2
3,518,309 - -1.8
3,518,309 - +1.1
3,518,350 + -0.4
3,518,350 + -0.7
3,518,350 + +0.7
3,518,350 + -1.0
3,518,350 + -0.3
3,518,350 + +0.5
3,518,351 - -1.4
3,518,351 - -0.7
3,518,351 - +2.4
3,518,351 - +1.0
3,518,398 + Xcc-8004.3634.1 0.11 -0.5
3,518,398 + Xcc-8004.3634.1 0.11 +1.1
3,518,398 + Xcc-8004.3634.1 0.11 -0.8
3,518,399 - Xcc-8004.3634.1 0.12 +1.0
3,518,399 - Xcc-8004.3634.1 0.12 -2.3
3,518,399 - Xcc-8004.3634.1 0.12 +0.5
3,518,399 - Xcc-8004.3634.1 0.12 -0.4
3,518,399 - Xcc-8004.3634.1 0.12 +1.2
3,518,551 + Xcc-8004.3634.1 0.40 -0.1
3,518,552 - Xcc-8004.3634.1 0.40 -2.2
3,518,630 + Xcc-8004.3634.1 0.55 -0.2
3,518,630 + Xcc-8004.3634.1 0.55 +0.1
3,518,630 + Xcc-8004.3634.1 0.55 -0.9
3,518,630 + Xcc-8004.3634.1 0.55 +0.2
3,518,630 + Xcc-8004.3634.1 0.55 -2.1
3,518,630 + Xcc-8004.3634.1 0.55 -2.2
3,518,631 - Xcc-8004.3634.1 0.55 +0.4
3,518,870 + -0.1
3,518,870 + -0.8
3,518,871 - -0.7
3,518,871 - +0.2
3,519,312 + Xcc-8004.3635.1 0.70 +0.1
3,519,312 + Xcc-8004.3635.1 0.70 +0.4
3,519,313 - Xcc-8004.3635.1 0.70 +1.2
3,519,313 - Xcc-8004.3635.1 0.70 -0.5
3,519,313 - Xcc-8004.3635.1 0.70 +0.2
3,519,313 - Xcc-8004.3635.1 0.70 -2.7

Or see this region's nucleotide sequence