Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3605.1

Experiment: Citric Acid 10mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3604.1 and Xcc-8004.3605.1 overlap by 4 nucleotidesXcc-8004.3605.1 and Xcc-8004.3607.1 overlap by 4 nucleotides Xcc-8004.3604.1: Xcc-8004.3604.1 - COG2907: Amine oxidase, flavin-containing, at 3,493,294 to 3,494,544 Xcc-8004.3604.1 Xcc-8004.3605.1: Xcc-8004.3605.1 - hypothetical protein, at 3,494,541 to 3,495,422 Xcc-8004.3605.1 Xcc-8004.3607.1: Xcc-8004.3607.1 - S-adenosyl-L-methionine dependent methyltransferase, similar to cyclopropane-fatty-acyl-phospholipid synthase, at 3,495,419 to 3,496,714 Xcc-8004.3607.1 Position (kb) 3494 3495 3496Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3493.588 kb on + strand, within Xcc-8004.3604.1at 3493.588 kb on + strand, within Xcc-8004.3604.1at 3493.588 kb on + strand, within Xcc-8004.3604.1at 3493.588 kb on + strand, within Xcc-8004.3604.1at 3493.588 kb on + strand, within Xcc-8004.3604.1at 3493.588 kb on + strand, within Xcc-8004.3604.1at 3493.588 kb on + strand, within Xcc-8004.3604.1at 3493.700 kb on + strand, within Xcc-8004.3604.1at 3493.738 kb on + strand, within Xcc-8004.3604.1at 3493.739 kb on - strand, within Xcc-8004.3604.1at 3493.739 kb on - strand, within Xcc-8004.3604.1at 3493.756 kb on + strand, within Xcc-8004.3604.1at 3493.936 kb on + strand, within Xcc-8004.3604.1at 3493.936 kb on + strand, within Xcc-8004.3604.1at 3493.936 kb on + strand, within Xcc-8004.3604.1at 3493.936 kb on + strand, within Xcc-8004.3604.1at 3493.936 kb on + strand, within Xcc-8004.3604.1at 3493.937 kb on - strand, within Xcc-8004.3604.1at 3493.937 kb on - strand, within Xcc-8004.3604.1at 3493.937 kb on - strand, within Xcc-8004.3604.1at 3493.937 kb on - strand, within Xcc-8004.3604.1at 3493.937 kb on - strand, within Xcc-8004.3604.1at 3493.937 kb on - strand, within Xcc-8004.3604.1at 3493.937 kb on - strand, within Xcc-8004.3604.1at 3494.066 kb on + strand, within Xcc-8004.3604.1at 3494.066 kb on + strand, within Xcc-8004.3604.1at 3494.149 kb on + strand, within Xcc-8004.3604.1at 3494.149 kb on + strand, within Xcc-8004.3604.1at 3494.149 kb on + strand, within Xcc-8004.3604.1at 3494.150 kb on - strand, within Xcc-8004.3604.1at 3494.150 kb on - strand, within Xcc-8004.3604.1at 3494.269 kb on + strand, within Xcc-8004.3604.1at 3494.269 kb on + strand, within Xcc-8004.3604.1at 3494.270 kb on - strand, within Xcc-8004.3604.1at 3494.643 kb on + strand, within Xcc-8004.3605.1at 3494.643 kb on + strand, within Xcc-8004.3605.1at 3494.643 kb on + strand, within Xcc-8004.3605.1at 3494.643 kb on + strand, within Xcc-8004.3605.1at 3494.643 kb on + strand, within Xcc-8004.3605.1at 3494.644 kb on - strand, within Xcc-8004.3605.1at 3494.644 kb on - strand, within Xcc-8004.3605.1at 3494.644 kb on - strand, within Xcc-8004.3605.1at 3494.644 kb on - strand, within Xcc-8004.3605.1at 3494.644 kb on - strand, within Xcc-8004.3605.1at 3494.715 kb on + strand, within Xcc-8004.3605.1at 3494.716 kb on - strand, within Xcc-8004.3605.1at 3494.716 kb on - strand, within Xcc-8004.3605.1at 3494.916 kb on + strand, within Xcc-8004.3605.1at 3494.917 kb on - strand, within Xcc-8004.3605.1at 3494.929 kb on + strand, within Xcc-8004.3605.1at 3494.929 kb on + strand, within Xcc-8004.3605.1at 3494.929 kb on + strand, within Xcc-8004.3605.1at 3494.929 kb on + strand, within Xcc-8004.3605.1at 3494.929 kb on + strand, within Xcc-8004.3605.1at 3494.929 kb on + strand, within Xcc-8004.3605.1at 3494.929 kb on + strand, within Xcc-8004.3605.1at 3494.929 kb on + strand, within Xcc-8004.3605.1at 3494.930 kb on - strand, within Xcc-8004.3605.1at 3494.930 kb on - strand, within Xcc-8004.3605.1at 3494.930 kb on - strand, within Xcc-8004.3605.1at 3494.949 kb on + strand, within Xcc-8004.3605.1at 3494.949 kb on + strand, within Xcc-8004.3605.1at 3494.949 kb on + strand, within Xcc-8004.3605.1at 3494.949 kb on + strand, within Xcc-8004.3605.1at 3494.950 kb on - strand, within Xcc-8004.3605.1at 3494.950 kb on - strand, within Xcc-8004.3605.1at 3494.950 kb on - strand, within Xcc-8004.3605.1at 3494.952 kb on + strand, within Xcc-8004.3605.1at 3494.952 kb on + strand, within Xcc-8004.3605.1at 3494.952 kb on + strand, within Xcc-8004.3605.1at 3494.952 kb on + strand, within Xcc-8004.3605.1at 3494.953 kb on - strand, within Xcc-8004.3605.1at 3494.953 kb on - strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.030 kb on + strand, within Xcc-8004.3605.1at 3495.031 kb on - strand, within Xcc-8004.3605.1at 3495.031 kb on - strand, within Xcc-8004.3605.1at 3495.031 kb on - strand, within Xcc-8004.3605.1at 3495.031 kb on - strand, within Xcc-8004.3605.1at 3495.031 kb on - strand, within Xcc-8004.3605.1at 3495.132 kb on + strand, within Xcc-8004.3605.1at 3495.133 kb on - strand, within Xcc-8004.3605.1at 3495.133 kb on - strand, within Xcc-8004.3605.1at 3495.671 kb on + strand, within Xcc-8004.3607.1at 3495.671 kb on + strand, within Xcc-8004.3607.1at 3495.671 kb on + strand, within Xcc-8004.3607.1at 3495.671 kb on + strand, within Xcc-8004.3607.1at 3495.672 kb on - strand, within Xcc-8004.3607.1at 3495.672 kb on - strand, within Xcc-8004.3607.1at 3495.672 kb on - strand, within Xcc-8004.3607.1at 3495.802 kb on + strand, within Xcc-8004.3607.1at 3495.854 kb on + strand, within Xcc-8004.3607.1at 3495.854 kb on + strand, within Xcc-8004.3607.1at 3495.855 kb on - strand, within Xcc-8004.3607.1at 3495.905 kb on + strand, within Xcc-8004.3607.1at 3495.905 kb on + strand, within Xcc-8004.3607.1at 3495.905 kb on + strand, within Xcc-8004.3607.1at 3495.906 kb on - strand, within Xcc-8004.3607.1at 3496.190 kb on + strand, within Xcc-8004.3607.1at 3496.211 kb on + strand, within Xcc-8004.3607.1at 3496.211 kb on + strand, within Xcc-8004.3607.1at 3496.212 kb on - strand, within Xcc-8004.3607.1at 3496.260 kb on - strand, within Xcc-8004.3607.1at 3496.271 kb on + strand, within Xcc-8004.3607.1at 3496.271 kb on + strand, within Xcc-8004.3607.1at 3496.271 kb on + strand, within Xcc-8004.3607.1at 3496.271 kb on + strand, within Xcc-8004.3607.1at 3496.271 kb on + strand, within Xcc-8004.3607.1at 3496.272 kb on - strand, within Xcc-8004.3607.1at 3496.272 kb on - strand, within Xcc-8004.3607.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid 10mM (C)
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3,493,588 + Xcc-8004.3604.1 0.24 -1.5
3,493,588 + Xcc-8004.3604.1 0.24 -2.5
3,493,588 + Xcc-8004.3604.1 0.24 -2.2
3,493,588 + Xcc-8004.3604.1 0.24 -1.4
3,493,588 + Xcc-8004.3604.1 0.24 -0.6
3,493,588 + Xcc-8004.3604.1 0.24 -2.1
3,493,588 + Xcc-8004.3604.1 0.24 +0.6
3,493,700 + Xcc-8004.3604.1 0.32 -2.1
3,493,738 + Xcc-8004.3604.1 0.35 +0.4
3,493,739 - Xcc-8004.3604.1 0.36 -0.0
3,493,739 - Xcc-8004.3604.1 0.36 +0.2
3,493,756 + Xcc-8004.3604.1 0.37 -0.8
3,493,936 + Xcc-8004.3604.1 0.51 +1.8
3,493,936 + Xcc-8004.3604.1 0.51 +0.1
3,493,936 + Xcc-8004.3604.1 0.51 -0.8
3,493,936 + Xcc-8004.3604.1 0.51 -3.6
3,493,936 + Xcc-8004.3604.1 0.51 -0.9
3,493,937 - Xcc-8004.3604.1 0.51 +0.6
3,493,937 - Xcc-8004.3604.1 0.51 +1.2
3,493,937 - Xcc-8004.3604.1 0.51 -0.3
3,493,937 - Xcc-8004.3604.1 0.51 -0.3
3,493,937 - Xcc-8004.3604.1 0.51 +0.3
3,493,937 - Xcc-8004.3604.1 0.51 +1.4
3,493,937 - Xcc-8004.3604.1 0.51 +0.7
3,494,066 + Xcc-8004.3604.1 0.62 -0.7
3,494,066 + Xcc-8004.3604.1 0.62 -2.5
3,494,149 + Xcc-8004.3604.1 0.68 -1.0
3,494,149 + Xcc-8004.3604.1 0.68 +0.2
3,494,149 + Xcc-8004.3604.1 0.68 -1.2
3,494,150 - Xcc-8004.3604.1 0.68 -0.7
3,494,150 - Xcc-8004.3604.1 0.68 +0.5
3,494,269 + Xcc-8004.3604.1 0.78 -1.5
3,494,269 + Xcc-8004.3604.1 0.78 -0.1
3,494,270 - Xcc-8004.3604.1 0.78 -0.8
3,494,643 + Xcc-8004.3605.1 0.12 +0.5
3,494,643 + Xcc-8004.3605.1 0.12 +0.2
3,494,643 + Xcc-8004.3605.1 0.12 +0.2
3,494,643 + Xcc-8004.3605.1 0.12 -1.2
3,494,643 + Xcc-8004.3605.1 0.12 -2.5
3,494,644 - Xcc-8004.3605.1 0.12 +1.3
3,494,644 - Xcc-8004.3605.1 0.12 -0.7
3,494,644 - Xcc-8004.3605.1 0.12 -1.0
3,494,644 - Xcc-8004.3605.1 0.12 -1.8
3,494,644 - Xcc-8004.3605.1 0.12 -1.7
3,494,715 + Xcc-8004.3605.1 0.20 -1.6
3,494,716 - Xcc-8004.3605.1 0.20 -1.0
3,494,716 - Xcc-8004.3605.1 0.20 +1.5
3,494,916 + Xcc-8004.3605.1 0.43 -0.4
3,494,917 - Xcc-8004.3605.1 0.43 +0.1
3,494,929 + Xcc-8004.3605.1 0.44 -1.7
3,494,929 + Xcc-8004.3605.1 0.44 +1.3
3,494,929 + Xcc-8004.3605.1 0.44 -1.0
3,494,929 + Xcc-8004.3605.1 0.44 -1.3
3,494,929 + Xcc-8004.3605.1 0.44 -1.2
3,494,929 + Xcc-8004.3605.1 0.44 -0.1
3,494,929 + Xcc-8004.3605.1 0.44 -0.7
3,494,929 + Xcc-8004.3605.1 0.44 +1.0
3,494,930 - Xcc-8004.3605.1 0.44 +1.8
3,494,930 - Xcc-8004.3605.1 0.44 +1.0
3,494,930 - Xcc-8004.3605.1 0.44 -3.6
3,494,949 + Xcc-8004.3605.1 0.46 -1.5
3,494,949 + Xcc-8004.3605.1 0.46 -3.1
3,494,949 + Xcc-8004.3605.1 0.46 -1.9
3,494,949 + Xcc-8004.3605.1 0.46 -2.5
3,494,950 - Xcc-8004.3605.1 0.46 +0.2
3,494,950 - Xcc-8004.3605.1 0.46 -0.8
3,494,950 - Xcc-8004.3605.1 0.46 -0.2
3,494,952 + Xcc-8004.3605.1 0.47 +1.0
3,494,952 + Xcc-8004.3605.1 0.47 -0.1
3,494,952 + Xcc-8004.3605.1 0.47 -0.3
3,494,952 + Xcc-8004.3605.1 0.47 -0.7
3,494,953 - Xcc-8004.3605.1 0.47 +1.5
3,494,953 - Xcc-8004.3605.1 0.47 +0.6
3,495,030 + Xcc-8004.3605.1 0.55 -1.1
3,495,030 + Xcc-8004.3605.1 0.55 -0.1
3,495,030 + Xcc-8004.3605.1 0.55 -1.4
3,495,030 + Xcc-8004.3605.1 0.55 -0.3
3,495,030 + Xcc-8004.3605.1 0.55 +2.4
3,495,030 + Xcc-8004.3605.1 0.55 -1.5
3,495,030 + Xcc-8004.3605.1 0.55 +0.5
3,495,030 + Xcc-8004.3605.1 0.55 -0.7
3,495,030 + Xcc-8004.3605.1 0.55 -1.7
3,495,030 + Xcc-8004.3605.1 0.55 -1.2
3,495,030 + Xcc-8004.3605.1 0.55 -1.7
3,495,030 + Xcc-8004.3605.1 0.55 +1.7
3,495,031 - Xcc-8004.3605.1 0.56 -1.1
3,495,031 - Xcc-8004.3605.1 0.56 +3.4
3,495,031 - Xcc-8004.3605.1 0.56 +1.2
3,495,031 - Xcc-8004.3605.1 0.56 -1.2
3,495,031 - Xcc-8004.3605.1 0.56 +0.2
3,495,132 + Xcc-8004.3605.1 0.67 -0.5
3,495,133 - Xcc-8004.3605.1 0.67 +0.2
3,495,133 - Xcc-8004.3605.1 0.67 +0.4
3,495,671 + Xcc-8004.3607.1 0.19 -2.1
3,495,671 + Xcc-8004.3607.1 0.19 +0.4
3,495,671 + Xcc-8004.3607.1 0.19 -1.3
3,495,671 + Xcc-8004.3607.1 0.19 +0.3
3,495,672 - Xcc-8004.3607.1 0.20 -3.4
3,495,672 - Xcc-8004.3607.1 0.20 -2.2
3,495,672 - Xcc-8004.3607.1 0.20 +0.6
3,495,802 + Xcc-8004.3607.1 0.30 -3.6
3,495,854 + Xcc-8004.3607.1 0.34 -0.4
3,495,854 + Xcc-8004.3607.1 0.34 +0.6
3,495,855 - Xcc-8004.3607.1 0.34 -0.4
3,495,905 + Xcc-8004.3607.1 0.38 +0.9
3,495,905 + Xcc-8004.3607.1 0.38 +0.1
3,495,905 + Xcc-8004.3607.1 0.38 -0.3
3,495,906 - Xcc-8004.3607.1 0.38 +0.3
3,496,190 + Xcc-8004.3607.1 0.59 -0.1
3,496,211 + Xcc-8004.3607.1 0.61 -0.5
3,496,211 + Xcc-8004.3607.1 0.61 -0.4
3,496,212 - Xcc-8004.3607.1 0.61 +1.5
3,496,260 - Xcc-8004.3607.1 0.65 +0.1
3,496,271 + Xcc-8004.3607.1 0.66 -1.2
3,496,271 + Xcc-8004.3607.1 0.66 -1.0
3,496,271 + Xcc-8004.3607.1 0.66 -1.3
3,496,271 + Xcc-8004.3607.1 0.66 +0.3
3,496,271 + Xcc-8004.3607.1 0.66 -1.6
3,496,272 - Xcc-8004.3607.1 0.66 -1.1
3,496,272 - Xcc-8004.3607.1 0.66 -0.9

Or see this region's nucleotide sequence