Experiment: Citric Acid 10mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.3436.1 and Xcc-8004.3437.1 are separated by 60 nucleotides Xcc-8004.3437.1 and Xcc-8004.3438.1 are separated by 224 nucleotides Xcc-8004.3438.1 and Xcc-8004.3442.1 are separated by 763 nucleotides
Xcc-8004.3436.1: Xcc-8004.3436.1 - hypothetical protein, at 3,327,147 to 3,327,578
Xcc-8004.3436.1
Xcc-8004.3437.1: Xcc-8004.3437.1 - tmRNA-binding protein SmpB, at 3,327,639 to 3,328,142
Xcc-8004.3437.1
Xcc-8004.3438.1: Xcc-8004.3438.1 - Serine peptidase, at 3,328,367 to 3,330,826
Xcc-8004.3438.1
Xcc-8004.3442.1: Xcc-8004.3442.1 - putative; ORF located using Glimmer/Genemark, at 3,331,590 to 3,331,829
Xcc-8004.3442.1
Xcc-8004.3443.1: Xcc-8004.3443.1 - hypothetical protein, at 3,331,826 to 3,332,650
Xcc-8004.3443.1
Position (kb) 3328
3329
3330
3331 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3327.572 kb on + strand at 3327.572 kb on + strand at 3327.572 kb on + strand at 3327.572 kb on + strand at 3327.572 kb on + strand at 3327.573 kb on - strand at 3327.573 kb on - strand at 3327.573 kb on - strand at 3328.127 kb on + strand at 3328.128 kb on - strand at 3328.279 kb on + strand at 3328.279 kb on + strand at 3328.279 kb on + strand at 3328.372 kb on + strand at 3328.372 kb on + strand at 3328.372 kb on + strand at 3328.372 kb on + strand at 3328.372 kb on + strand at 3328.372 kb on + strand at 3328.372 kb on + strand at 3328.372 kb on + strand at 3328.372 kb on + strand at 3328.373 kb on - strand at 3328.373 kb on - strand at 3328.373 kb on - strand at 3328.373 kb on - strand at 3328.373 kb on - strand at 3328.373 kb on - strand at 3328.419 kb on + strand at 3328.419 kb on + strand at 3328.419 kb on + strand at 3328.420 kb on - strand at 3328.420 kb on - strand at 3328.420 kb on - strand at 3328.420 kb on - strand at 3328.420 kb on - strand at 3328.420 kb on - strand at 3328.602 kb on + strand at 3328.602 kb on + strand at 3328.605 kb on + strand at 3328.605 kb on + strand at 3328.605 kb on + strand at 3328.606 kb on - strand at 3328.606 kb on - strand at 3328.686 kb on + strand, within Xcc-8004.3438.1 at 3328.686 kb on + strand, within Xcc-8004.3438.1 at 3328.699 kb on - strand, within Xcc-8004.3438.1 at 3328.699 kb on - strand, within Xcc-8004.3438.1 at 3328.699 kb on - strand, within Xcc-8004.3438.1 at 3328.699 kb on - strand, within Xcc-8004.3438.1 at 3328.699 kb on - strand, within Xcc-8004.3438.1 at 3328.699 kb on - strand, within Xcc-8004.3438.1 at 3328.699 kb on - strand, within Xcc-8004.3438.1 at 3328.699 kb on - strand, within Xcc-8004.3438.1 at 3328.699 kb on - strand, within Xcc-8004.3438.1 at 3328.699 kb on - strand, within Xcc-8004.3438.1 at 3328.791 kb on + strand, within Xcc-8004.3438.1 at 3328.792 kb on - strand, within Xcc-8004.3438.1 at 3328.850 kb on + strand, within Xcc-8004.3438.1 at 3328.850 kb on + strand, within Xcc-8004.3438.1 at 3328.850 kb on + strand, within Xcc-8004.3438.1 at 3328.851 kb on - strand, within Xcc-8004.3438.1 at 3328.851 kb on - strand, within Xcc-8004.3438.1 at 3328.851 kb on - strand, within Xcc-8004.3438.1 at 3328.851 kb on - strand, within Xcc-8004.3438.1 at 3328.851 kb on - strand, within Xcc-8004.3438.1 at 3328.851 kb on - strand, within Xcc-8004.3438.1 at 3328.851 kb on - strand, within Xcc-8004.3438.1 at 3328.856 kb on + strand, within Xcc-8004.3438.1 at 3328.857 kb on - strand, within Xcc-8004.3438.1 at 3328.893 kb on - strand, within Xcc-8004.3438.1 at 3328.914 kb on + strand, within Xcc-8004.3438.1 at 3328.914 kb on + strand, within Xcc-8004.3438.1 at 3328.914 kb on + strand, within Xcc-8004.3438.1 at 3328.914 kb on + strand, within Xcc-8004.3438.1 at 3328.914 kb on + strand, within Xcc-8004.3438.1 at 3328.915 kb on - strand, within Xcc-8004.3438.1 at 3328.915 kb on - strand, within Xcc-8004.3438.1 at 3328.915 kb on - strand, within Xcc-8004.3438.1 at 3328.915 kb on - strand, within Xcc-8004.3438.1 at 3328.915 kb on - strand, within Xcc-8004.3438.1 at 3328.915 kb on - strand, within Xcc-8004.3438.1 at 3329.067 kb on + strand, within Xcc-8004.3438.1 at 3329.067 kb on + strand, within Xcc-8004.3438.1 at 3329.067 kb on + strand, within Xcc-8004.3438.1 at 3329.067 kb on + strand, within Xcc-8004.3438.1 at 3329.068 kb on - strand, within Xcc-8004.3438.1 at 3329.068 kb on - strand, within Xcc-8004.3438.1 at 3329.068 kb on - strand, within Xcc-8004.3438.1 at 3329.068 kb on - strand, within Xcc-8004.3438.1 at 3329.068 kb on - strand, within Xcc-8004.3438.1 at 3329.068 kb on - strand, within Xcc-8004.3438.1 at 3329.068 kb on - strand, within Xcc-8004.3438.1 at 3329.374 kb on - strand, within Xcc-8004.3438.1 at 3329.695 kb on - strand, within Xcc-8004.3438.1 at 3329.695 kb on - strand, within Xcc-8004.3438.1 at 3329.820 kb on + strand, within Xcc-8004.3438.1 at 3329.820 kb on + strand, within Xcc-8004.3438.1 at 3329.820 kb on + strand, within Xcc-8004.3438.1 at 3330.117 kb on + strand, within Xcc-8004.3438.1 at 3330.117 kb on + strand, within Xcc-8004.3438.1 at 3330.117 kb on + strand, within Xcc-8004.3438.1 at 3330.118 kb on - strand, within Xcc-8004.3438.1 at 3330.118 kb on - strand, within Xcc-8004.3438.1 at 3330.118 kb on - strand, within Xcc-8004.3438.1 at 3330.546 kb on + strand, within Xcc-8004.3438.1 at 3330.546 kb on + strand, within Xcc-8004.3438.1 at 3330.546 kb on + strand, within Xcc-8004.3438.1 at 3330.547 kb on - strand, within Xcc-8004.3438.1 at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.648 kb on + strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.649 kb on - strand at 3330.831 kb on + strand at 3330.832 kb on - strand at 3330.832 kb on - strand at 3330.850 kb on + strand at 3330.850 kb on + strand at 3330.850 kb on + strand at 3330.850 kb on + strand at 3330.851 kb on - strand at 3330.851 kb on - strand at 3330.880 kb on + strand at 3330.880 kb on + strand at 3330.880 kb on + strand at 3330.881 kb on - strand at 3330.891 kb on + strand at 3330.891 kb on + strand at 3330.891 kb on + strand at 3330.899 kb on + strand at 3330.899 kb on + strand at 3330.899 kb on + strand at 3330.899 kb on + strand at 3330.899 kb on + strand at 3330.899 kb on + strand at 3330.925 kb on + strand at 3331.372 kb on + strand at 3331.408 kb on + strand at 3331.409 kb on - strand at 3331.415 kb on + strand at 3331.415 kb on + strand at 3331.415 kb on + strand at 3331.416 kb on - strand at 3331.416 kb on - strand at 3331.416 kb on - strand at 3331.416 kb on - strand at 3331.427 kb on + strand at 3331.427 kb on + strand at 3331.427 kb on + strand at 3331.427 kb on + strand at 3331.447 kb on + strand at 3331.447 kb on + strand at 3331.447 kb on + strand at 3331.447 kb on + strand at 3331.447 kb on + strand at 3331.447 kb on + strand at 3331.447 kb on + strand at 3331.447 kb on + strand at 3331.448 kb on - strand at 3331.448 kb on - strand at 3331.448 kb on - strand at 3331.448 kb on - strand at 3331.448 kb on - strand at 3331.515 kb on + strand at 3331.515 kb on + strand at 3331.515 kb on + strand at 3331.515 kb on + strand at 3331.515 kb on + strand at 3331.515 kb on + strand at 3331.516 kb on - strand at 3331.516 kb on - strand at 3331.516 kb on - strand at 3331.516 kb on - strand at 3331.516 kb on - strand at 3331.516 kb on - strand at 3331.516 kb on - strand at 3331.535 kb on + strand at 3331.536 kb on - strand at 3331.681 kb on + strand, within Xcc-8004.3442.1 at 3331.681 kb on + strand, within Xcc-8004.3442.1 at 3331.682 kb on - strand, within Xcc-8004.3442.1 at 3331.794 kb on + strand, within Xcc-8004.3442.1
Per-strain Table
Position Strand Gene LocusTag Fraction Citric Acid 10mM (C) remove 3,327,572 + +1.8 3,327,572 + -0.2 3,327,572 + -1.8 3,327,572 + -0.2 3,327,572 + +1.2 3,327,573 - +1.0 3,327,573 - +1.7 3,327,573 - +1.4 3,328,127 + +0.1 3,328,128 - -2.8 3,328,279 + +0.4 3,328,279 + -0.1 3,328,279 + -0.4 3,328,372 + +0.9 3,328,372 + +0.8 3,328,372 + -1.8 3,328,372 + -0.6 3,328,372 + +0.1 3,328,372 + -0.5 3,328,372 + +0.5 3,328,372 + +0.8 3,328,372 + -1.5 3,328,373 - +0.1 3,328,373 - -2.2 3,328,373 - -0.7 3,328,373 - -1.0 3,328,373 - -2.3 3,328,373 - +1.1 3,328,419 + +0.9 3,328,419 + -1.6 3,328,419 + +3.0 3,328,420 - +1.1 3,328,420 - +1.3 3,328,420 - +0.9 3,328,420 - -0.5 3,328,420 - -0.6 3,328,420 - +2.1 3,328,602 + -1.0 3,328,602 + -1.2 3,328,605 + +0.8 3,328,605 + -0.6 3,328,605 + +0.4 3,328,606 - -1.5 3,328,606 - -0.0 3,328,686 + Xcc-8004.3438.1 0.13 +0.3 3,328,686 + Xcc-8004.3438.1 0.13 +1.5 3,328,699 - Xcc-8004.3438.1 0.13 -0.5 3,328,699 - Xcc-8004.3438.1 0.13 -1.7 3,328,699 - Xcc-8004.3438.1 0.13 +0.2 3,328,699 - Xcc-8004.3438.1 0.13 +0.4 3,328,699 - Xcc-8004.3438.1 0.13 +1.7 3,328,699 - Xcc-8004.3438.1 0.13 -0.3 3,328,699 - Xcc-8004.3438.1 0.13 -0.8 3,328,699 - Xcc-8004.3438.1 0.13 -1.2 3,328,699 - Xcc-8004.3438.1 0.13 -0.5 3,328,699 - Xcc-8004.3438.1 0.13 +0.7 3,328,791 + Xcc-8004.3438.1 0.17 -1.1 3,328,792 - Xcc-8004.3438.1 0.17 +1.8 3,328,850 + Xcc-8004.3438.1 0.20 +1.4 3,328,850 + Xcc-8004.3438.1 0.20 -1.4 3,328,850 + Xcc-8004.3438.1 0.20 -1.2 3,328,851 - Xcc-8004.3438.1 0.20 +1.8 3,328,851 - Xcc-8004.3438.1 0.20 -0.0 3,328,851 - Xcc-8004.3438.1 0.20 +0.2 3,328,851 - Xcc-8004.3438.1 0.20 +0.9 3,328,851 - Xcc-8004.3438.1 0.20 +1.1 3,328,851 - Xcc-8004.3438.1 0.20 -1.6 3,328,851 - Xcc-8004.3438.1 0.20 +0.4 3,328,856 + Xcc-8004.3438.1 0.20 +2.5 3,328,857 - Xcc-8004.3438.1 0.20 -0.1 3,328,893 - Xcc-8004.3438.1 0.21 -0.1 3,328,914 + Xcc-8004.3438.1 0.22 -0.6 3,328,914 + Xcc-8004.3438.1 0.22 +0.6 3,328,914 + Xcc-8004.3438.1 0.22 -1.9 3,328,914 + Xcc-8004.3438.1 0.22 -1.6 3,328,914 + Xcc-8004.3438.1 0.22 +0.0 3,328,915 - Xcc-8004.3438.1 0.22 +1.3 3,328,915 - Xcc-8004.3438.1 0.22 +0.7 3,328,915 - Xcc-8004.3438.1 0.22 -0.2 3,328,915 - Xcc-8004.3438.1 0.22 +0.5 3,328,915 - Xcc-8004.3438.1 0.22 +0.6 3,328,915 - Xcc-8004.3438.1 0.22 +0.0 3,329,067 + Xcc-8004.3438.1 0.28 +0.2 3,329,067 + Xcc-8004.3438.1 0.28 -0.8 3,329,067 + Xcc-8004.3438.1 0.28 -1.0 3,329,067 + Xcc-8004.3438.1 0.28 +2.5 3,329,068 - Xcc-8004.3438.1 0.28 +1.4 3,329,068 - Xcc-8004.3438.1 0.28 -1.2 3,329,068 - Xcc-8004.3438.1 0.28 -0.3 3,329,068 - Xcc-8004.3438.1 0.28 -1.5 3,329,068 - Xcc-8004.3438.1 0.28 +2.2 3,329,068 - Xcc-8004.3438.1 0.28 +1.6 3,329,068 - Xcc-8004.3438.1 0.28 -0.1 3,329,374 - Xcc-8004.3438.1 0.41 +1.3 3,329,695 - Xcc-8004.3438.1 0.54 +0.7 3,329,695 - Xcc-8004.3438.1 0.54 +1.2 3,329,820 + Xcc-8004.3438.1 0.59 -0.4 3,329,820 + Xcc-8004.3438.1 0.59 -0.1 3,329,820 + Xcc-8004.3438.1 0.59 -1.8 3,330,117 + Xcc-8004.3438.1 0.71 -0.4 3,330,117 + Xcc-8004.3438.1 0.71 -0.2 3,330,117 + Xcc-8004.3438.1 0.71 +1.0 3,330,118 - Xcc-8004.3438.1 0.71 -2.6 3,330,118 - Xcc-8004.3438.1 0.71 -1.1 3,330,118 - Xcc-8004.3438.1 0.71 -1.6 3,330,546 + Xcc-8004.3438.1 0.89 -0.8 3,330,546 + Xcc-8004.3438.1 0.89 -1.1 3,330,546 + Xcc-8004.3438.1 0.89 -1.8 3,330,547 - Xcc-8004.3438.1 0.89 +0.4 3,330,648 + +0.4 3,330,648 + +1.4 3,330,648 + +1.0 3,330,648 + -0.2 3,330,648 + +1.1 3,330,648 + -1.4 3,330,648 + -1.5 3,330,648 + -2.2 3,330,648 + -1.6 3,330,648 + -0.2 3,330,648 + -1.2 3,330,648 + -0.9 3,330,648 + -0.5 3,330,648 + -0.9 3,330,648 + -0.9 3,330,648 + +0.0 3,330,648 + -0.6 3,330,649 - +1.5 3,330,649 - -2.1 3,330,649 - +0.6 3,330,649 - -0.8 3,330,649 - -0.3 3,330,649 - +2.1 3,330,649 - -1.1 3,330,649 - -2.5 3,330,649 - +0.4 3,330,649 - -1.1 3,330,649 - -1.8 3,330,649 - +1.0 3,330,649 - -0.3 3,330,649 - -0.6 3,330,649 - -0.3 3,330,649 - -0.9 3,330,649 - -0.9 3,330,649 - +0.1 3,330,649 - -1.4 3,330,649 - +0.5 3,330,831 + +1.0 3,330,832 - -0.8 3,330,832 - -1.0 3,330,850 + +3.6 3,330,850 + +0.9 3,330,850 + -1.6 3,330,850 + -1.6 3,330,851 - -0.3 3,330,851 - -1.4 3,330,880 + -0.6 3,330,880 + +0.0 3,330,880 + +0.8 3,330,881 - -1.4 3,330,891 + -0.7 3,330,891 + -0.4 3,330,891 + +0.8 3,330,899 + +0.3 3,330,899 + -0.2 3,330,899 + +0.1 3,330,899 + -1.2 3,330,899 + +0.6 3,330,899 + +0.0 3,330,925 + -1.0 3,331,372 + +0.2 3,331,408 + -1.5 3,331,409 - +1.4 3,331,415 + -1.9 3,331,415 + +0.5 3,331,415 + +0.3 3,331,416 - -1.5 3,331,416 - +0.6 3,331,416 - -0.5 3,331,416 - -2.0 3,331,427 + -0.5 3,331,427 + +0.4 3,331,427 + -0.5 3,331,427 + -1.0 3,331,447 + +0.3 3,331,447 + -0.1 3,331,447 + -1.5 3,331,447 + -1.9 3,331,447 + -0.8 3,331,447 + -1.6 3,331,447 + +1.2 3,331,447 + -1.5 3,331,448 - -1.6 3,331,448 - -0.4 3,331,448 - -1.2 3,331,448 - -1.8 3,331,448 - -0.5 3,331,515 + -0.4 3,331,515 + -0.1 3,331,515 + -0.4 3,331,515 + -0.8 3,331,515 + -0.7 3,331,515 + +0.4 3,331,516 - +0.8 3,331,516 - -0.6 3,331,516 - -0.7 3,331,516 - +0.4 3,331,516 - -1.4 3,331,516 - +0.6 3,331,516 - -0.3 3,331,535 + -0.1 3,331,536 - -0.0 3,331,681 + Xcc-8004.3442.1 0.38 -0.3 3,331,681 + Xcc-8004.3442.1 0.38 -1.0 3,331,682 - Xcc-8004.3442.1 0.38 +0.1 3,331,794 + Xcc-8004.3442.1 0.85 -0.1
Or see this region's nucleotide sequence