Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3418.1

Experiment: Citric Acid 10mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3417.1 and Xcc-8004.3418.1 are separated by 95 nucleotidesXcc-8004.3418.1 and Xcc-8004.3419.1 are separated by 88 nucleotides Xcc-8004.3417.1: Xcc-8004.3417.1 - ABC-type multidrug transport system, ATPase and permease components, at 3,308,007 to 3,309,773 Xcc-8004.3417.1 Xcc-8004.3418.1: Xcc-8004.3418.1 - Hydrogen peroxide-inducible genes activator, at 3,309,869 to 3,310,768 Xcc-8004.3418.1 Xcc-8004.3419.1: Xcc-8004.3419.1 - Toxin secretion ABC transporter ATP-binding protein, at 3,310,857 to 3,312,548 Xcc-8004.3419.1 Position (kb) 3309 3310 3311Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3308.880 kb on + strand, within Xcc-8004.3417.1at 3308.880 kb on + strand, within Xcc-8004.3417.1at 3308.880 kb on + strand, within Xcc-8004.3417.1at 3308.880 kb on + strand, within Xcc-8004.3417.1at 3308.880 kb on + strand, within Xcc-8004.3417.1at 3308.880 kb on + strand, within Xcc-8004.3417.1at 3308.880 kb on + strand, within Xcc-8004.3417.1at 3308.880 kb on + strand, within Xcc-8004.3417.1at 3308.880 kb on + strand, within Xcc-8004.3417.1at 3308.881 kb on - strand, within Xcc-8004.3417.1at 3308.881 kb on - strand, within Xcc-8004.3417.1at 3308.881 kb on - strand, within Xcc-8004.3417.1at 3308.881 kb on - strand, within Xcc-8004.3417.1at 3308.881 kb on - strand, within Xcc-8004.3417.1at 3308.881 kb on - strand, within Xcc-8004.3417.1at 3308.881 kb on - strand, within Xcc-8004.3417.1at 3308.881 kb on - strand, within Xcc-8004.3417.1at 3308.881 kb on - strand, within Xcc-8004.3417.1at 3308.881 kb on - strand, within Xcc-8004.3417.1at 3308.881 kb on - strand, within Xcc-8004.3417.1at 3308.881 kb on - strand, within Xcc-8004.3417.1at 3308.881 kb on - strand, within Xcc-8004.3417.1at 3308.881 kb on - strand, within Xcc-8004.3417.1at 3309.238 kb on + strand, within Xcc-8004.3417.1at 3309.238 kb on + strand, within Xcc-8004.3417.1at 3309.238 kb on + strand, within Xcc-8004.3417.1at 3309.239 kb on - strand, within Xcc-8004.3417.1at 3309.239 kb on - strand, within Xcc-8004.3417.1at 3309.239 kb on - strand, within Xcc-8004.3417.1at 3309.239 kb on - strand, within Xcc-8004.3417.1at 3309.239 kb on - strand, within Xcc-8004.3417.1at 3309.239 kb on - strand, within Xcc-8004.3417.1at 3309.287 kb on - strand, within Xcc-8004.3417.1at 3309.406 kb on - strand, within Xcc-8004.3417.1at 3309.430 kb on - strand, within Xcc-8004.3417.1at 3309.430 kb on - strand, within Xcc-8004.3417.1at 3309.430 kb on - strand, within Xcc-8004.3417.1at 3309.430 kb on - strand, within Xcc-8004.3417.1at 3309.735 kb on + strandat 3309.905 kb on + strandat 3309.905 kb on + strandat 3309.906 kb on - strandat 3309.906 kb on - strandat 3309.906 kb on - strandat 3310.051 kb on + strand, within Xcc-8004.3418.1at 3310.051 kb on + strand, within Xcc-8004.3418.1at 3310.052 kb on - strand, within Xcc-8004.3418.1at 3310.190 kb on + strand, within Xcc-8004.3418.1at 3310.473 kb on - strand, within Xcc-8004.3418.1at 3310.535 kb on + strand, within Xcc-8004.3418.1at 3310.610 kb on + strand, within Xcc-8004.3418.1at 3310.610 kb on + strand, within Xcc-8004.3418.1at 3310.610 kb on + strand, within Xcc-8004.3418.1at 3310.610 kb on + strand, within Xcc-8004.3418.1at 3310.610 kb on + strand, within Xcc-8004.3418.1at 3310.610 kb on + strand, within Xcc-8004.3418.1at 3310.611 kb on - strand, within Xcc-8004.3418.1at 3310.611 kb on - strand, within Xcc-8004.3418.1at 3310.611 kb on - strand, within Xcc-8004.3418.1at 3310.611 kb on - strand, within Xcc-8004.3418.1at 3310.673 kb on + strand, within Xcc-8004.3418.1at 3310.673 kb on + strand, within Xcc-8004.3418.1at 3310.673 kb on + strand, within Xcc-8004.3418.1at 3310.674 kb on - strand, within Xcc-8004.3418.1at 3310.674 kb on - strand, within Xcc-8004.3418.1at 3310.674 kb on - strand, within Xcc-8004.3418.1at 3310.778 kb on - strandat 3310.778 kb on - strandat 3310.788 kb on + strandat 3310.789 kb on - strandat 3310.809 kb on + strandat 3310.809 kb on + strandat 3310.932 kb on + strandat 3310.932 kb on + strandat 3310.932 kb on + strandat 3310.932 kb on + strandat 3310.932 kb on + strandat 3310.932 kb on + strandat 3310.932 kb on + strandat 3310.932 kb on + strandat 3310.933 kb on - strandat 3310.933 kb on - strandat 3310.933 kb on - strandat 3310.933 kb on - strandat 3310.933 kb on - strandat 3310.933 kb on - strandat 3310.933 kb on - strandat 3310.954 kb on - strandat 3311.047 kb on + strand, within Xcc-8004.3419.1at 3311.063 kb on - strand, within Xcc-8004.3419.1at 3311.063 kb on - strand, within Xcc-8004.3419.1at 3311.340 kb on + strand, within Xcc-8004.3419.1at 3311.340 kb on + strand, within Xcc-8004.3419.1at 3311.340 kb on + strand, within Xcc-8004.3419.1at 3311.340 kb on + strand, within Xcc-8004.3419.1at 3311.340 kb on + strand, within Xcc-8004.3419.1at 3311.341 kb on - strand, within Xcc-8004.3419.1at 3311.341 kb on - strand, within Xcc-8004.3419.1at 3311.341 kb on - strand, within Xcc-8004.3419.1at 3311.341 kb on - strand, within Xcc-8004.3419.1at 3311.341 kb on - strand, within Xcc-8004.3419.1at 3311.341 kb on - strand, within Xcc-8004.3419.1at 3311.503 kb on - strand, within Xcc-8004.3419.1at 3311.503 kb on - strand, within Xcc-8004.3419.1at 3311.562 kb on + strand, within Xcc-8004.3419.1at 3311.563 kb on - strand, within Xcc-8004.3419.1at 3311.592 kb on + strand, within Xcc-8004.3419.1at 3311.592 kb on + strand, within Xcc-8004.3419.1at 3311.593 kb on - strand, within Xcc-8004.3419.1at 3311.628 kb on + strand, within Xcc-8004.3419.1at 3311.629 kb on - strand, within Xcc-8004.3419.1at 3311.629 kb on - strand, within Xcc-8004.3419.1at 3311.739 kb on + strand, within Xcc-8004.3419.1at 3311.739 kb on + strand, within Xcc-8004.3419.1at 3311.739 kb on + strand, within Xcc-8004.3419.1at 3311.739 kb on + strand, within Xcc-8004.3419.1at 3311.739 kb on + strand, within Xcc-8004.3419.1at 3311.739 kb on + strand, within Xcc-8004.3419.1at 3311.739 kb on + strand, within Xcc-8004.3419.1at 3311.740 kb on - strand, within Xcc-8004.3419.1at 3311.740 kb on - strand, within Xcc-8004.3419.1at 3311.740 kb on - strand, within Xcc-8004.3419.1at 3311.740 kb on - strand, within Xcc-8004.3419.1at 3311.740 kb on - strand, within Xcc-8004.3419.1at 3311.744 kb on + strand, within Xcc-8004.3419.1at 3311.744 kb on + strand, within Xcc-8004.3419.1at 3311.744 kb on + strand, within Xcc-8004.3419.1at 3311.744 kb on + strand, within Xcc-8004.3419.1at 3311.744 kb on + strand, within Xcc-8004.3419.1at 3311.744 kb on + strand, within Xcc-8004.3419.1at 3311.755 kb on + strand, within Xcc-8004.3419.1at 3311.755 kb on + strand, within Xcc-8004.3419.1at 3311.755 kb on + strand, within Xcc-8004.3419.1at 3311.755 kb on + strand, within Xcc-8004.3419.1at 3311.755 kb on + strand, within Xcc-8004.3419.1at 3311.755 kb on + strand, within Xcc-8004.3419.1at 3311.756 kb on - strand, within Xcc-8004.3419.1at 3311.756 kb on - strand, within Xcc-8004.3419.1at 3311.756 kb on - strand, within Xcc-8004.3419.1at 3311.756 kb on - strand, within Xcc-8004.3419.1at 3311.763 kb on + strand, within Xcc-8004.3419.1at 3311.763 kb on + strand, within Xcc-8004.3419.1at 3311.763 kb on + strand, within Xcc-8004.3419.1at 3311.763 kb on + strand, within Xcc-8004.3419.1at 3311.764 kb on - strand, within Xcc-8004.3419.1at 3311.764 kb on - strand, within Xcc-8004.3419.1at 3311.764 kb on - strand, within Xcc-8004.3419.1at 3311.764 kb on - strand, within Xcc-8004.3419.1at 3311.764 kb on - strand, within Xcc-8004.3419.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid 10mM (C)
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3,308,880 + Xcc-8004.3417.1 0.49 -0.7
3,308,880 + Xcc-8004.3417.1 0.49 -2.0
3,308,880 + Xcc-8004.3417.1 0.49 -2.2
3,308,880 + Xcc-8004.3417.1 0.49 +0.8
3,308,880 + Xcc-8004.3417.1 0.49 -0.1
3,308,880 + Xcc-8004.3417.1 0.49 -0.6
3,308,880 + Xcc-8004.3417.1 0.49 +0.4
3,308,880 + Xcc-8004.3417.1 0.49 +0.9
3,308,880 + Xcc-8004.3417.1 0.49 -0.9
3,308,881 - Xcc-8004.3417.1 0.49 +1.6
3,308,881 - Xcc-8004.3417.1 0.49 +1.0
3,308,881 - Xcc-8004.3417.1 0.49 +0.9
3,308,881 - Xcc-8004.3417.1 0.49 +0.0
3,308,881 - Xcc-8004.3417.1 0.49 +0.6
3,308,881 - Xcc-8004.3417.1 0.49 +0.6
3,308,881 - Xcc-8004.3417.1 0.49 -1.5
3,308,881 - Xcc-8004.3417.1 0.49 +0.0
3,308,881 - Xcc-8004.3417.1 0.49 +0.3
3,308,881 - Xcc-8004.3417.1 0.49 -0.2
3,308,881 - Xcc-8004.3417.1 0.49 +1.4
3,308,881 - Xcc-8004.3417.1 0.49 +0.3
3,308,881 - Xcc-8004.3417.1 0.49 +1.3
3,308,881 - Xcc-8004.3417.1 0.49 -0.2
3,309,238 + Xcc-8004.3417.1 0.70 +1.0
3,309,238 + Xcc-8004.3417.1 0.70 -0.9
3,309,238 + Xcc-8004.3417.1 0.70 +0.7
3,309,239 - Xcc-8004.3417.1 0.70 -0.0
3,309,239 - Xcc-8004.3417.1 0.70 -1.2
3,309,239 - Xcc-8004.3417.1 0.70 +1.1
3,309,239 - Xcc-8004.3417.1 0.70 -0.3
3,309,239 - Xcc-8004.3417.1 0.70 -0.1
3,309,239 - Xcc-8004.3417.1 0.70 -1.9
3,309,287 - Xcc-8004.3417.1 0.72 +0.2
3,309,406 - Xcc-8004.3417.1 0.79 -1.4
3,309,430 - Xcc-8004.3417.1 0.81 +0.1
3,309,430 - Xcc-8004.3417.1 0.81 -0.8
3,309,430 - Xcc-8004.3417.1 0.81 +0.9
3,309,430 - Xcc-8004.3417.1 0.81 -0.4
3,309,735 + -0.9
3,309,905 + +1.2
3,309,905 + +2.6
3,309,906 - -0.1
3,309,906 - +0.2
3,309,906 - -0.6
3,310,051 + Xcc-8004.3418.1 0.20 +0.6
3,310,051 + Xcc-8004.3418.1 0.20 -2.8
3,310,052 - Xcc-8004.3418.1 0.20 +0.3
3,310,190 + Xcc-8004.3418.1 0.36 +0.8
3,310,473 - Xcc-8004.3418.1 0.67 -0.3
3,310,535 + Xcc-8004.3418.1 0.74 +0.4
3,310,610 + Xcc-8004.3418.1 0.82 -1.2
3,310,610 + Xcc-8004.3418.1 0.82 -1.8
3,310,610 + Xcc-8004.3418.1 0.82 +0.9
3,310,610 + Xcc-8004.3418.1 0.82 -1.4
3,310,610 + Xcc-8004.3418.1 0.82 -0.2
3,310,610 + Xcc-8004.3418.1 0.82 -1.8
3,310,611 - Xcc-8004.3418.1 0.82 +0.2
3,310,611 - Xcc-8004.3418.1 0.82 +0.6
3,310,611 - Xcc-8004.3418.1 0.82 -0.7
3,310,611 - Xcc-8004.3418.1 0.82 -1.2
3,310,673 + Xcc-8004.3418.1 0.89 -1.4
3,310,673 + Xcc-8004.3418.1 0.89 +0.2
3,310,673 + Xcc-8004.3418.1 0.89 +0.2
3,310,674 - Xcc-8004.3418.1 0.89 -1.0
3,310,674 - Xcc-8004.3418.1 0.89 +0.6
3,310,674 - Xcc-8004.3418.1 0.89 +2.2
3,310,778 - -0.2
3,310,778 - +0.8
3,310,788 + +1.0
3,310,789 - -0.2
3,310,809 + +0.7
3,310,809 + +0.8
3,310,932 + +0.1
3,310,932 + +0.4
3,310,932 + -1.0
3,310,932 + -0.5
3,310,932 + +1.2
3,310,932 + -0.6
3,310,932 + -0.2
3,310,932 + -0.9
3,310,933 - +0.2
3,310,933 - +0.1
3,310,933 - -1.8
3,310,933 - +0.3
3,310,933 - +0.2
3,310,933 - +0.8
3,310,933 - -1.2
3,310,954 - +1.7
3,311,047 + Xcc-8004.3419.1 0.11 -0.1
3,311,063 - Xcc-8004.3419.1 0.12 +0.3
3,311,063 - Xcc-8004.3419.1 0.12 +0.3
3,311,340 + Xcc-8004.3419.1 0.29 +1.6
3,311,340 + Xcc-8004.3419.1 0.29 +0.1
3,311,340 + Xcc-8004.3419.1 0.29 -0.1
3,311,340 + Xcc-8004.3419.1 0.29 -0.0
3,311,340 + Xcc-8004.3419.1 0.29 +0.7
3,311,341 - Xcc-8004.3419.1 0.29 -1.7
3,311,341 - Xcc-8004.3419.1 0.29 -1.8
3,311,341 - Xcc-8004.3419.1 0.29 -0.7
3,311,341 - Xcc-8004.3419.1 0.29 +0.2
3,311,341 - Xcc-8004.3419.1 0.29 -0.9
3,311,341 - Xcc-8004.3419.1 0.29 +1.1
3,311,503 - Xcc-8004.3419.1 0.38 -0.9
3,311,503 - Xcc-8004.3419.1 0.38 +0.5
3,311,562 + Xcc-8004.3419.1 0.42 +0.2
3,311,563 - Xcc-8004.3419.1 0.42 -0.8
3,311,592 + Xcc-8004.3419.1 0.43 +0.4
3,311,592 + Xcc-8004.3419.1 0.43 +0.0
3,311,593 - Xcc-8004.3419.1 0.43 +0.9
3,311,628 + Xcc-8004.3419.1 0.46 +2.2
3,311,629 - Xcc-8004.3419.1 0.46 +0.1
3,311,629 - Xcc-8004.3419.1 0.46 +0.0
3,311,739 + Xcc-8004.3419.1 0.52 +0.2
3,311,739 + Xcc-8004.3419.1 0.52 +0.6
3,311,739 + Xcc-8004.3419.1 0.52 +0.4
3,311,739 + Xcc-8004.3419.1 0.52 -0.8
3,311,739 + Xcc-8004.3419.1 0.52 +0.9
3,311,739 + Xcc-8004.3419.1 0.52 +1.8
3,311,739 + Xcc-8004.3419.1 0.52 -1.6
3,311,740 - Xcc-8004.3419.1 0.52 -0.6
3,311,740 - Xcc-8004.3419.1 0.52 -1.1
3,311,740 - Xcc-8004.3419.1 0.52 +0.2
3,311,740 - Xcc-8004.3419.1 0.52 +1.4
3,311,740 - Xcc-8004.3419.1 0.52 +1.1
3,311,744 + Xcc-8004.3419.1 0.52 +0.6
3,311,744 + Xcc-8004.3419.1 0.52 -1.2
3,311,744 + Xcc-8004.3419.1 0.52 +1.6
3,311,744 + Xcc-8004.3419.1 0.52 -2.7
3,311,744 + Xcc-8004.3419.1 0.52 -1.2
3,311,744 + Xcc-8004.3419.1 0.52 -0.4
3,311,755 + Xcc-8004.3419.1 0.53 +2.2
3,311,755 + Xcc-8004.3419.1 0.53 +2.1
3,311,755 + Xcc-8004.3419.1 0.53 -1.1
3,311,755 + Xcc-8004.3419.1 0.53 +0.6
3,311,755 + Xcc-8004.3419.1 0.53 -1.1
3,311,755 + Xcc-8004.3419.1 0.53 -1.6
3,311,756 - Xcc-8004.3419.1 0.53 -0.0
3,311,756 - Xcc-8004.3419.1 0.53 -0.6
3,311,756 - Xcc-8004.3419.1 0.53 +0.9
3,311,756 - Xcc-8004.3419.1 0.53 +0.5
3,311,763 + Xcc-8004.3419.1 0.54 +0.3
3,311,763 + Xcc-8004.3419.1 0.54 +0.2
3,311,763 + Xcc-8004.3419.1 0.54 -0.9
3,311,763 + Xcc-8004.3419.1 0.54 +0.4
3,311,764 - Xcc-8004.3419.1 0.54 +0.7
3,311,764 - Xcc-8004.3419.1 0.54 -1.8
3,311,764 - Xcc-8004.3419.1 0.54 -0.4
3,311,764 - Xcc-8004.3419.1 0.54 +0.6
3,311,764 - Xcc-8004.3419.1 0.54 -0.4

Or see this region's nucleotide sequence