Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3386.1

Experiment: Citric Acid 10mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3383.1 and Xcc-8004.3385.1 overlap by 4 nucleotidesXcc-8004.3385.1 and Xcc-8004.3386.1 overlap by 4 nucleotidesXcc-8004.3386.1 and Xcc-8004.3387.1 are separated by 13 nucleotides Xcc-8004.3383.1: Xcc-8004.3383.1 - D-mannose isomerase (EC 5.3.1.7), at 3,277,559 to 3,278,764 Xcc-8004.3383.1 Xcc-8004.3385.1: Xcc-8004.3385.1 - Fructokinase in mannoside utilization gene cluster (EC 2.7.1.4), at 3,278,761 to 3,279,747 Xcc-8004.3385.1 Xcc-8004.3386.1: Xcc-8004.3386.1 - Predicted mannose transporter, GGP family, at 3,279,744 to 3,281,054 Xcc-8004.3386.1 Xcc-8004.3387.1: Xcc-8004.3387.1 - transcriptional regulator, at 3,281,068 to 3,282,213 Xcc-8004.3387.1 Position (kb) 3279 3280 3281 3282Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3279.137 kb on + strand, within Xcc-8004.3385.1at 3279.422 kb on + strand, within Xcc-8004.3385.1at 3279.422 kb on + strand, within Xcc-8004.3385.1at 3279.423 kb on - strand, within Xcc-8004.3385.1at 3279.423 kb on - strand, within Xcc-8004.3385.1at 3279.797 kb on - strandat 3279.808 kb on + strandat 3279.808 kb on + strandat 3279.808 kb on + strandat 3279.809 kb on - strandat 3279.809 kb on - strandat 3279.809 kb on - strandat 3279.814 kb on + strandat 3280.021 kb on + strand, within Xcc-8004.3386.1at 3280.022 kb on - strand, within Xcc-8004.3386.1at 3280.076 kb on + strand, within Xcc-8004.3386.1at 3280.077 kb on - strand, within Xcc-8004.3386.1at 3280.166 kb on - strand, within Xcc-8004.3386.1at 3280.177 kb on + strand, within Xcc-8004.3386.1at 3280.177 kb on + strand, within Xcc-8004.3386.1at 3280.178 kb on - strand, within Xcc-8004.3386.1at 3280.178 kb on - strand, within Xcc-8004.3386.1at 3280.178 kb on - strand, within Xcc-8004.3386.1at 3280.228 kb on + strand, within Xcc-8004.3386.1at 3280.228 kb on + strand, within Xcc-8004.3386.1at 3280.228 kb on + strand, within Xcc-8004.3386.1at 3280.229 kb on - strand, within Xcc-8004.3386.1at 3280.229 kb on - strand, within Xcc-8004.3386.1at 3280.270 kb on + strand, within Xcc-8004.3386.1at 3280.270 kb on + strand, within Xcc-8004.3386.1at 3280.270 kb on + strand, within Xcc-8004.3386.1at 3280.270 kb on + strand, within Xcc-8004.3386.1at 3280.271 kb on - strand, within Xcc-8004.3386.1at 3280.271 kb on - strand, within Xcc-8004.3386.1at 3280.271 kb on - strand, within Xcc-8004.3386.1at 3280.435 kb on + strand, within Xcc-8004.3386.1at 3280.435 kb on + strand, within Xcc-8004.3386.1at 3280.436 kb on - strand, within Xcc-8004.3386.1at 3280.436 kb on - strand, within Xcc-8004.3386.1at 3280.436 kb on - strand, within Xcc-8004.3386.1at 3280.471 kb on + strand, within Xcc-8004.3386.1at 3280.645 kb on + strand, within Xcc-8004.3386.1at 3280.645 kb on + strand, within Xcc-8004.3386.1at 3280.645 kb on + strand, within Xcc-8004.3386.1at 3280.645 kb on + strand, within Xcc-8004.3386.1at 3280.717 kb on + strand, within Xcc-8004.3386.1at 3280.718 kb on - strand, within Xcc-8004.3386.1at 3280.799 kb on - strand, within Xcc-8004.3386.1at 3280.799 kb on - strand, within Xcc-8004.3386.1at 3280.847 kb on - strand, within Xcc-8004.3386.1at 3280.847 kb on - strand, within Xcc-8004.3386.1at 3281.054 kb on + strandat 3281.054 kb on + strandat 3281.054 kb on + strandat 3281.055 kb on - strandat 3281.055 kb on - strandat 3281.055 kb on - strandat 3281.055 kb on - strandat 3281.163 kb on + strandat 3281.384 kb on + strand, within Xcc-8004.3387.1at 3281.385 kb on - strand, within Xcc-8004.3387.1at 3281.574 kb on + strand, within Xcc-8004.3387.1at 3281.754 kb on + strand, within Xcc-8004.3387.1at 3281.755 kb on - strand, within Xcc-8004.3387.1at 3281.755 kb on - strand, within Xcc-8004.3387.1at 3281.827 kb on - strand, within Xcc-8004.3387.1at 3281.843 kb on + strand, within Xcc-8004.3387.1at 3281.972 kb on + strand, within Xcc-8004.3387.1at 3281.972 kb on + strand, within Xcc-8004.3387.1at 3281.972 kb on + strand, within Xcc-8004.3387.1at 3281.972 kb on + strand, within Xcc-8004.3387.1at 3281.972 kb on + strand, within Xcc-8004.3387.1at 3281.972 kb on + strand, within Xcc-8004.3387.1at 3281.973 kb on - strand, within Xcc-8004.3387.1at 3281.973 kb on - strand, within Xcc-8004.3387.1at 3281.973 kb on - strand, within Xcc-8004.3387.1at 3281.973 kb on - strand, within Xcc-8004.3387.1at 3281.973 kb on - strand, within Xcc-8004.3387.1at 3281.973 kb on - strand, within Xcc-8004.3387.1at 3281.973 kb on - strand, within Xcc-8004.3387.1at 3281.973 kb on - strand, within Xcc-8004.3387.1at 3281.973 kb on - strand, within Xcc-8004.3387.1at 3281.973 kb on - strand, within Xcc-8004.3387.1at 3281.978 kb on + strand, within Xcc-8004.3387.1at 3281.978 kb on + strand, within Xcc-8004.3387.1at 3281.978 kb on + strand, within Xcc-8004.3387.1at 3281.978 kb on + strand, within Xcc-8004.3387.1at 3281.978 kb on + strand, within Xcc-8004.3387.1at 3281.978 kb on + strand, within Xcc-8004.3387.1at 3281.978 kb on + strand, within Xcc-8004.3387.1at 3281.978 kb on + strand, within Xcc-8004.3387.1at 3281.978 kb on + strand, within Xcc-8004.3387.1at 3281.978 kb on + strand, within Xcc-8004.3387.1at 3281.978 kb on + strand, within Xcc-8004.3387.1at 3281.978 kb on + strand, within Xcc-8004.3387.1at 3281.978 kb on + strand, within Xcc-8004.3387.1at 3281.978 kb on + strand, within Xcc-8004.3387.1at 3281.978 kb on + strand, within Xcc-8004.3387.1at 3281.978 kb on + strand, within Xcc-8004.3387.1at 3281.978 kb on + strand, within Xcc-8004.3387.1at 3281.979 kb on - strand, within Xcc-8004.3387.1at 3281.979 kb on - strand, within Xcc-8004.3387.1at 3281.979 kb on - strand, within Xcc-8004.3387.1at 3281.979 kb on - strand, within Xcc-8004.3387.1at 3281.979 kb on - strand, within Xcc-8004.3387.1at 3281.979 kb on - strand, within Xcc-8004.3387.1at 3281.979 kb on - strand, within Xcc-8004.3387.1at 3281.979 kb on - strand, within Xcc-8004.3387.1at 3281.979 kb on - strand, within Xcc-8004.3387.1at 3281.979 kb on - strand, within Xcc-8004.3387.1at 3281.979 kb on - strand, within Xcc-8004.3387.1at 3281.979 kb on - strand, within Xcc-8004.3387.1at 3281.979 kb on - strand, within Xcc-8004.3387.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid 10mM (C)
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3,279,137 + Xcc-8004.3385.1 0.38 -2.0
3,279,422 + Xcc-8004.3385.1 0.67 +0.4
3,279,422 + Xcc-8004.3385.1 0.67 +0.8
3,279,423 - Xcc-8004.3385.1 0.67 +1.6
3,279,423 - Xcc-8004.3385.1 0.67 +0.2
3,279,797 - +1.0
3,279,808 + +1.3
3,279,808 + -1.4
3,279,808 + -0.3
3,279,809 - +2.3
3,279,809 - -0.0
3,279,809 - +1.8
3,279,814 + +0.4
3,280,021 + Xcc-8004.3386.1 0.21 -0.2
3,280,022 - Xcc-8004.3386.1 0.21 -0.2
3,280,076 + Xcc-8004.3386.1 0.25 -0.8
3,280,077 - Xcc-8004.3386.1 0.25 -1.5
3,280,166 - Xcc-8004.3386.1 0.32 -0.6
3,280,177 + Xcc-8004.3386.1 0.33 +1.0
3,280,177 + Xcc-8004.3386.1 0.33 +2.6
3,280,178 - Xcc-8004.3386.1 0.33 -0.8
3,280,178 - Xcc-8004.3386.1 0.33 -0.3
3,280,178 - Xcc-8004.3386.1 0.33 -0.7
3,280,228 + Xcc-8004.3386.1 0.37 +0.0
3,280,228 + Xcc-8004.3386.1 0.37 -1.0
3,280,228 + Xcc-8004.3386.1 0.37 +1.1
3,280,229 - Xcc-8004.3386.1 0.37 +0.5
3,280,229 - Xcc-8004.3386.1 0.37 +1.2
3,280,270 + Xcc-8004.3386.1 0.40 -1.0
3,280,270 + Xcc-8004.3386.1 0.40 -2.4
3,280,270 + Xcc-8004.3386.1 0.40 -0.7
3,280,270 + Xcc-8004.3386.1 0.40 -0.3
3,280,271 - Xcc-8004.3386.1 0.40 +0.2
3,280,271 - Xcc-8004.3386.1 0.40 +0.4
3,280,271 - Xcc-8004.3386.1 0.40 +1.8
3,280,435 + Xcc-8004.3386.1 0.53 +1.9
3,280,435 + Xcc-8004.3386.1 0.53 +1.2
3,280,436 - Xcc-8004.3386.1 0.53 +0.2
3,280,436 - Xcc-8004.3386.1 0.53 -0.1
3,280,436 - Xcc-8004.3386.1 0.53 -0.2
3,280,471 + Xcc-8004.3386.1 0.55 -0.3
3,280,645 + Xcc-8004.3386.1 0.69 +1.9
3,280,645 + Xcc-8004.3386.1 0.69 +0.7
3,280,645 + Xcc-8004.3386.1 0.69 -2.4
3,280,645 + Xcc-8004.3386.1 0.69 -1.0
3,280,717 + Xcc-8004.3386.1 0.74 +0.4
3,280,718 - Xcc-8004.3386.1 0.74 +0.0
3,280,799 - Xcc-8004.3386.1 0.80 +1.2
3,280,799 - Xcc-8004.3386.1 0.80 -0.7
3,280,847 - Xcc-8004.3386.1 0.84 +1.0
3,280,847 - Xcc-8004.3386.1 0.84 +0.0
3,281,054 + +1.8
3,281,054 + +1.3
3,281,054 + -2.6
3,281,055 - +1.6
3,281,055 - -0.8
3,281,055 - +1.2
3,281,055 - +0.0
3,281,163 + -1.0
3,281,384 + Xcc-8004.3387.1 0.28 -1.6
3,281,385 - Xcc-8004.3387.1 0.28 -1.0
3,281,574 + Xcc-8004.3387.1 0.44 -1.2
3,281,754 + Xcc-8004.3387.1 0.60 +0.5
3,281,755 - Xcc-8004.3387.1 0.60 -0.7
3,281,755 - Xcc-8004.3387.1 0.60 +0.9
3,281,827 - Xcc-8004.3387.1 0.66 +0.6
3,281,843 + Xcc-8004.3387.1 0.68 +1.8
3,281,972 + Xcc-8004.3387.1 0.79 -1.0
3,281,972 + Xcc-8004.3387.1 0.79 -1.0
3,281,972 + Xcc-8004.3387.1 0.79 +0.8
3,281,972 + Xcc-8004.3387.1 0.79 -1.3
3,281,972 + Xcc-8004.3387.1 0.79 +1.0
3,281,972 + Xcc-8004.3387.1 0.79 +0.9
3,281,973 - Xcc-8004.3387.1 0.79 +0.8
3,281,973 - Xcc-8004.3387.1 0.79 -0.7
3,281,973 - Xcc-8004.3387.1 0.79 +1.0
3,281,973 - Xcc-8004.3387.1 0.79 +0.3
3,281,973 - Xcc-8004.3387.1 0.79 -1.2
3,281,973 - Xcc-8004.3387.1 0.79 +0.9
3,281,973 - Xcc-8004.3387.1 0.79 -0.8
3,281,973 - Xcc-8004.3387.1 0.79 +1.0
3,281,973 - Xcc-8004.3387.1 0.79 +0.5
3,281,973 - Xcc-8004.3387.1 0.79 +2.2
3,281,978 + Xcc-8004.3387.1 0.79 +0.6
3,281,978 + Xcc-8004.3387.1 0.79 -1.0
3,281,978 + Xcc-8004.3387.1 0.79 -1.2
3,281,978 + Xcc-8004.3387.1 0.79 -0.0
3,281,978 + Xcc-8004.3387.1 0.79 -1.4
3,281,978 + Xcc-8004.3387.1 0.79 -1.1
3,281,978 + Xcc-8004.3387.1 0.79 -1.0
3,281,978 + Xcc-8004.3387.1 0.79 -1.2
3,281,978 + Xcc-8004.3387.1 0.79 +1.6
3,281,978 + Xcc-8004.3387.1 0.79 +0.2
3,281,978 + Xcc-8004.3387.1 0.79 -2.9
3,281,978 + Xcc-8004.3387.1 0.79 -1.0
3,281,978 + Xcc-8004.3387.1 0.79 +0.2
3,281,978 + Xcc-8004.3387.1 0.79 -0.5
3,281,978 + Xcc-8004.3387.1 0.79 +1.0
3,281,978 + Xcc-8004.3387.1 0.79 -1.4
3,281,978 + Xcc-8004.3387.1 0.79 -0.8
3,281,979 - Xcc-8004.3387.1 0.79 +2.2
3,281,979 - Xcc-8004.3387.1 0.79 -1.0
3,281,979 - Xcc-8004.3387.1 0.79 -1.6
3,281,979 - Xcc-8004.3387.1 0.79 +1.3
3,281,979 - Xcc-8004.3387.1 0.79 +0.6
3,281,979 - Xcc-8004.3387.1 0.79 -0.3
3,281,979 - Xcc-8004.3387.1 0.79 -0.8
3,281,979 - Xcc-8004.3387.1 0.79 +0.7
3,281,979 - Xcc-8004.3387.1 0.79 +0.2
3,281,979 - Xcc-8004.3387.1 0.79 -1.0
3,281,979 - Xcc-8004.3387.1 0.79 +1.2
3,281,979 - Xcc-8004.3387.1 0.79 +0.1
3,281,979 - Xcc-8004.3387.1 0.79 -0.3

Or see this region's nucleotide sequence