Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.332.1

Experiment: Citric Acid 10mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.331.1 and Xcc-8004.332.1 are separated by 209 nucleotidesXcc-8004.332.1 and Xcc-8004.333.1 are separated by 61 nucleotides Xcc-8004.331.1: Xcc-8004.331.1 - Nuclease, at 318,979 to 320,799 Xcc-8004.331.1 Xcc-8004.332.1: Xcc-8004.332.1 - FIG01210876: hypothetical protein, at 321,009 to 321,392 Xcc-8004.332.1 Xcc-8004.333.1: Xcc-8004.333.1 - Putative metal chaperone, involved in Zn homeostasis, GTPase of COG0523 family, at 321,454 to 322,779 Xcc-8004.333.1 Position (kb) 321 322Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 320.133 kb on + strand, within Xcc-8004.331.1at 320.206 kb on + strand, within Xcc-8004.331.1at 320.207 kb on - strand, within Xcc-8004.331.1at 320.274 kb on + strand, within Xcc-8004.331.1at 320.518 kb on + strand, within Xcc-8004.331.1at 320.518 kb on + strand, within Xcc-8004.331.1at 320.518 kb on + strand, within Xcc-8004.331.1at 320.518 kb on + strand, within Xcc-8004.331.1at 320.518 kb on + strand, within Xcc-8004.331.1at 320.518 kb on + strand, within Xcc-8004.331.1at 320.518 kb on + strand, within Xcc-8004.331.1at 320.519 kb on - strand, within Xcc-8004.331.1at 320.599 kb on + strand, within Xcc-8004.331.1at 320.599 kb on + strand, within Xcc-8004.331.1at 320.599 kb on + strand, within Xcc-8004.331.1at 320.599 kb on + strand, within Xcc-8004.331.1at 320.599 kb on + strand, within Xcc-8004.331.1at 320.600 kb on - strand, within Xcc-8004.331.1at 320.600 kb on - strand, within Xcc-8004.331.1at 320.600 kb on - strand, within Xcc-8004.331.1at 320.600 kb on - strand, within Xcc-8004.331.1at 320.600 kb on - strand, within Xcc-8004.331.1at 320.600 kb on - strand, within Xcc-8004.331.1at 320.600 kb on - strand, within Xcc-8004.331.1at 320.600 kb on - strand, within Xcc-8004.331.1at 320.600 kb on - strand, within Xcc-8004.331.1at 320.600 kb on - strand, within Xcc-8004.331.1at 320.605 kb on + strand, within Xcc-8004.331.1at 320.605 kb on + strand, within Xcc-8004.331.1at 320.605 kb on + strand, within Xcc-8004.331.1at 320.605 kb on + strand, within Xcc-8004.331.1at 320.605 kb on + strand, within Xcc-8004.331.1at 320.605 kb on + strand, within Xcc-8004.331.1at 320.605 kb on + strand, within Xcc-8004.331.1at 320.605 kb on + strand, within Xcc-8004.331.1at 320.605 kb on + strand, within Xcc-8004.331.1at 320.605 kb on + strand, within Xcc-8004.331.1at 320.605 kb on + strand, within Xcc-8004.331.1at 320.605 kb on + strand, within Xcc-8004.331.1at 320.605 kb on + strand, within Xcc-8004.331.1at 320.605 kb on + strand, within Xcc-8004.331.1at 320.605 kb on + strand, within Xcc-8004.331.1at 320.605 kb on + strand, within Xcc-8004.331.1at 320.605 kb on + strand, within Xcc-8004.331.1at 320.606 kb on - strand, within Xcc-8004.331.1at 320.606 kb on - strand, within Xcc-8004.331.1at 320.606 kb on - strand, within Xcc-8004.331.1at 320.606 kb on - strand, within Xcc-8004.331.1at 320.606 kb on - strand, within Xcc-8004.331.1at 320.606 kb on - strand, within Xcc-8004.331.1at 320.606 kb on - strand, within Xcc-8004.331.1at 320.606 kb on - strand, within Xcc-8004.331.1at 320.606 kb on - strand, within Xcc-8004.331.1at 320.606 kb on - strand, within Xcc-8004.331.1at 320.606 kb on - strand, within Xcc-8004.331.1at 320.606 kb on - strand, within Xcc-8004.331.1at 320.606 kb on - strand, within Xcc-8004.331.1at 320.606 kb on - strand, within Xcc-8004.331.1at 320.606 kb on - strand, within Xcc-8004.331.1at 320.606 kb on - strand, within Xcc-8004.331.1at 320.606 kb on - strand, within Xcc-8004.331.1at 320.606 kb on - strand, within Xcc-8004.331.1at 320.606 kb on - strand, within Xcc-8004.331.1at 320.611 kb on + strand, within Xcc-8004.331.1at 320.611 kb on + strand, within Xcc-8004.331.1at 320.611 kb on + strand, within Xcc-8004.331.1at 320.612 kb on - strand, within Xcc-8004.331.1at 320.612 kb on - strand, within Xcc-8004.331.1at 320.725 kb on + strandat 321.117 kb on + strand, within Xcc-8004.332.1at 321.118 kb on - strand, within Xcc-8004.332.1at 321.118 kb on - strand, within Xcc-8004.332.1at 321.252 kb on + strand, within Xcc-8004.332.1at 321.252 kb on + strand, within Xcc-8004.332.1at 321.252 kb on + strand, within Xcc-8004.332.1at 321.252 kb on + strand, within Xcc-8004.332.1at 321.252 kb on + strand, within Xcc-8004.332.1at 321.252 kb on + strand, within Xcc-8004.332.1at 321.252 kb on + strand, within Xcc-8004.332.1at 321.252 kb on + strand, within Xcc-8004.332.1at 321.252 kb on + strand, within Xcc-8004.332.1at 321.252 kb on + strand, within Xcc-8004.332.1at 321.252 kb on + strand, within Xcc-8004.332.1at 321.252 kb on + strand, within Xcc-8004.332.1at 321.252 kb on + strand, within Xcc-8004.332.1at 321.252 kb on + strand, within Xcc-8004.332.1at 321.252 kb on + strand, within Xcc-8004.332.1at 321.253 kb on - strand, within Xcc-8004.332.1at 321.253 kb on - strand, within Xcc-8004.332.1at 321.253 kb on - strand, within Xcc-8004.332.1at 321.253 kb on - strand, within Xcc-8004.332.1at 321.253 kb on - strand, within Xcc-8004.332.1at 321.253 kb on - strand, within Xcc-8004.332.1at 321.623 kb on + strand, within Xcc-8004.333.1at 321.624 kb on - strand, within Xcc-8004.333.1at 321.624 kb on - strand, within Xcc-8004.333.1at 321.751 kb on + strand, within Xcc-8004.333.1at 321.757 kb on + strand, within Xcc-8004.333.1at 321.757 kb on + strand, within Xcc-8004.333.1at 321.758 kb on - strand, within Xcc-8004.333.1at 321.961 kb on - strand, within Xcc-8004.333.1at 321.961 kb on - strand, within Xcc-8004.333.1at 321.961 kb on - strand, within Xcc-8004.333.1at 322.234 kb on + strand, within Xcc-8004.333.1at 322.234 kb on + strand, within Xcc-8004.333.1at 322.234 kb on + strand, within Xcc-8004.333.1at 322.234 kb on + strand, within Xcc-8004.333.1at 322.235 kb on - strand, within Xcc-8004.333.1at 322.235 kb on - strand, within Xcc-8004.333.1at 322.255 kb on + strand, within Xcc-8004.333.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid 10mM (C)
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320,133 + Xcc-8004.331.1 0.63 -0.1
320,206 + Xcc-8004.331.1 0.67 -0.4
320,207 - Xcc-8004.331.1 0.67 -0.7
320,274 + Xcc-8004.331.1 0.71 -0.2
320,518 + Xcc-8004.331.1 0.85 -0.9
320,518 + Xcc-8004.331.1 0.85 +0.5
320,518 + Xcc-8004.331.1 0.85 -0.8
320,518 + Xcc-8004.331.1 0.85 +1.2
320,518 + Xcc-8004.331.1 0.85 +0.7
320,518 + Xcc-8004.331.1 0.85 -0.4
320,518 + Xcc-8004.331.1 0.85 +0.5
320,519 - Xcc-8004.331.1 0.85 -0.6
320,599 + Xcc-8004.331.1 0.89 +1.0
320,599 + Xcc-8004.331.1 0.89 -0.0
320,599 + Xcc-8004.331.1 0.89 -1.0
320,599 + Xcc-8004.331.1 0.89 -1.8
320,599 + Xcc-8004.331.1 0.89 -0.5
320,600 - Xcc-8004.331.1 0.89 -0.0
320,600 - Xcc-8004.331.1 0.89 -1.3
320,600 - Xcc-8004.331.1 0.89 -0.5
320,600 - Xcc-8004.331.1 0.89 +0.5
320,600 - Xcc-8004.331.1 0.89 +0.8
320,600 - Xcc-8004.331.1 0.89 -1.0
320,600 - Xcc-8004.331.1 0.89 -1.4
320,600 - Xcc-8004.331.1 0.89 -2.1
320,600 - Xcc-8004.331.1 0.89 -0.1
320,600 - Xcc-8004.331.1 0.89 +2.4
320,605 + Xcc-8004.331.1 0.89 +0.4
320,605 + Xcc-8004.331.1 0.89 +1.3
320,605 + Xcc-8004.331.1 0.89 +0.2
320,605 + Xcc-8004.331.1 0.89 -1.0
320,605 + Xcc-8004.331.1 0.89 -0.7
320,605 + Xcc-8004.331.1 0.89 -1.5
320,605 + Xcc-8004.331.1 0.89 +0.7
320,605 + Xcc-8004.331.1 0.89 -0.2
320,605 + Xcc-8004.331.1 0.89 +0.5
320,605 + Xcc-8004.331.1 0.89 +0.2
320,605 + Xcc-8004.331.1 0.89 -1.4
320,605 + Xcc-8004.331.1 0.89 -1.8
320,605 + Xcc-8004.331.1 0.89 +1.2
320,605 + Xcc-8004.331.1 0.89 +1.0
320,605 + Xcc-8004.331.1 0.89 +1.4
320,605 + Xcc-8004.331.1 0.89 +0.5
320,605 + Xcc-8004.331.1 0.89 +0.5
320,606 - Xcc-8004.331.1 0.89 -1.2
320,606 - Xcc-8004.331.1 0.89 +1.6
320,606 - Xcc-8004.331.1 0.89 -0.3
320,606 - Xcc-8004.331.1 0.89 -1.1
320,606 - Xcc-8004.331.1 0.89 +0.6
320,606 - Xcc-8004.331.1 0.89 -0.8
320,606 - Xcc-8004.331.1 0.89 +0.3
320,606 - Xcc-8004.331.1 0.89 +1.6
320,606 - Xcc-8004.331.1 0.89 +3.1
320,606 - Xcc-8004.331.1 0.89 -0.3
320,606 - Xcc-8004.331.1 0.89 +1.5
320,606 - Xcc-8004.331.1 0.89 -0.4
320,606 - Xcc-8004.331.1 0.89 +1.8
320,606 - Xcc-8004.331.1 0.89 +1.1
320,606 - Xcc-8004.331.1 0.89 -0.7
320,606 - Xcc-8004.331.1 0.89 +0.4
320,606 - Xcc-8004.331.1 0.89 +0.8
320,606 - Xcc-8004.331.1 0.89 -1.4
320,606 - Xcc-8004.331.1 0.89 +0.9
320,611 + Xcc-8004.331.1 0.90 +1.7
320,611 + Xcc-8004.331.1 0.90 -0.8
320,611 + Xcc-8004.331.1 0.90 +0.6
320,612 - Xcc-8004.331.1 0.90 +1.5
320,612 - Xcc-8004.331.1 0.90 -0.5
320,725 + -1.2
321,117 + Xcc-8004.332.1 0.28 -1.6
321,118 - Xcc-8004.332.1 0.28 +0.4
321,118 - Xcc-8004.332.1 0.28 -1.8
321,252 + Xcc-8004.332.1 0.63 +0.4
321,252 + Xcc-8004.332.1 0.63 -2.3
321,252 + Xcc-8004.332.1 0.63 -1.4
321,252 + Xcc-8004.332.1 0.63 -1.3
321,252 + Xcc-8004.332.1 0.63 -1.1
321,252 + Xcc-8004.332.1 0.63 -0.3
321,252 + Xcc-8004.332.1 0.63 -1.4
321,252 + Xcc-8004.332.1 0.63 +1.8
321,252 + Xcc-8004.332.1 0.63 +0.7
321,252 + Xcc-8004.332.1 0.63 +0.1
321,252 + Xcc-8004.332.1 0.63 +1.1
321,252 + Xcc-8004.332.1 0.63 +0.7
321,252 + Xcc-8004.332.1 0.63 -0.1
321,252 + Xcc-8004.332.1 0.63 -0.5
321,252 + Xcc-8004.332.1 0.63 +0.5
321,253 - Xcc-8004.332.1 0.64 -0.8
321,253 - Xcc-8004.332.1 0.64 -0.3
321,253 - Xcc-8004.332.1 0.64 -0.9
321,253 - Xcc-8004.332.1 0.64 -2.5
321,253 - Xcc-8004.332.1 0.64 -0.2
321,253 - Xcc-8004.332.1 0.64 -1.2
321,623 + Xcc-8004.333.1 0.13 -0.6
321,624 - Xcc-8004.333.1 0.13 +0.0
321,624 - Xcc-8004.333.1 0.13 -0.1
321,751 + Xcc-8004.333.1 0.22 +3.8
321,757 + Xcc-8004.333.1 0.23 -0.2
321,757 + Xcc-8004.333.1 0.23 -0.5
321,758 - Xcc-8004.333.1 0.23 -2.0
321,961 - Xcc-8004.333.1 0.38 -0.2
321,961 - Xcc-8004.333.1 0.38 -0.7
321,961 - Xcc-8004.333.1 0.38 -1.0
322,234 + Xcc-8004.333.1 0.59 -0.6
322,234 + Xcc-8004.333.1 0.59 -0.1
322,234 + Xcc-8004.333.1 0.59 +1.1
322,234 + Xcc-8004.333.1 0.59 -0.8
322,235 - Xcc-8004.333.1 0.59 -0.3
322,235 - Xcc-8004.333.1 0.59 -0.9
322,255 + Xcc-8004.333.1 0.60 +0.8

Or see this region's nucleotide sequence