Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3309.1

Experiment: Citric Acid 10mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.3307.1 and Xcc-8004.3309.1 are separated by 181 nucleotidesXcc-8004.3309.1 and Xcc-8004.3310.1 are separated by 56 nucleotides Xcc-8004.3307.1: Xcc-8004.3307.1 - Periplasmic aromatic amino acid aminotransferase beta precursor (EC 2.6.1.57), at 3,209,958 to 3,211,220 Xcc-8004.3307.1 Xcc-8004.3309.1: Xcc-8004.3309.1 - Cell division protein ZipA, at 3,211,402 to 3,212,136 Xcc-8004.3309.1 Xcc-8004.3310.1: Xcc-8004.3310.1 - Chromosome partition protein smc, at 3,212,193 to 3,215,696 Xcc-8004.3310.1 Position (kb) 3211 3212 3213Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3210.618 kb on + strand, within Xcc-8004.3307.1at 3210.618 kb on + strand, within Xcc-8004.3307.1at 3210.618 kb on + strand, within Xcc-8004.3307.1at 3210.618 kb on + strand, within Xcc-8004.3307.1at 3210.618 kb on + strand, within Xcc-8004.3307.1at 3210.618 kb on + strand, within Xcc-8004.3307.1at 3210.618 kb on + strand, within Xcc-8004.3307.1at 3210.618 kb on + strand, within Xcc-8004.3307.1at 3210.618 kb on + strand, within Xcc-8004.3307.1at 3210.618 kb on + strand, within Xcc-8004.3307.1at 3210.618 kb on + strand, within Xcc-8004.3307.1at 3210.619 kb on - strand, within Xcc-8004.3307.1at 3210.619 kb on - strand, within Xcc-8004.3307.1at 3210.619 kb on - strand, within Xcc-8004.3307.1at 3210.619 kb on - strand, within Xcc-8004.3307.1at 3210.619 kb on - strand, within Xcc-8004.3307.1at 3210.619 kb on - strand, within Xcc-8004.3307.1at 3210.619 kb on - strand, within Xcc-8004.3307.1at 3210.619 kb on - strand, within Xcc-8004.3307.1at 3210.653 kb on + strand, within Xcc-8004.3307.1at 3210.654 kb on - strand, within Xcc-8004.3307.1at 3210.654 kb on - strand, within Xcc-8004.3307.1at 3210.726 kb on + strand, within Xcc-8004.3307.1at 3210.726 kb on + strand, within Xcc-8004.3307.1at 3210.726 kb on + strand, within Xcc-8004.3307.1at 3210.726 kb on + strand, within Xcc-8004.3307.1at 3210.726 kb on + strand, within Xcc-8004.3307.1at 3210.726 kb on + strand, within Xcc-8004.3307.1at 3210.726 kb on + strand, within Xcc-8004.3307.1at 3210.726 kb on + strand, within Xcc-8004.3307.1at 3210.726 kb on + strand, within Xcc-8004.3307.1at 3210.726 kb on + strand, within Xcc-8004.3307.1at 3210.727 kb on - strand, within Xcc-8004.3307.1at 3210.727 kb on - strand, within Xcc-8004.3307.1at 3210.727 kb on - strand, within Xcc-8004.3307.1at 3210.727 kb on - strand, within Xcc-8004.3307.1at 3210.727 kb on - strand, within Xcc-8004.3307.1at 3210.727 kb on - strand, within Xcc-8004.3307.1at 3210.727 kb on - strand, within Xcc-8004.3307.1at 3210.735 kb on + strand, within Xcc-8004.3307.1at 3210.735 kb on + strand, within Xcc-8004.3307.1at 3210.735 kb on + strand, within Xcc-8004.3307.1at 3210.736 kb on - strand, within Xcc-8004.3307.1at 3210.736 kb on - strand, within Xcc-8004.3307.1at 3210.814 kb on - strand, within Xcc-8004.3307.1at 3211.020 kb on + strand, within Xcc-8004.3307.1at 3211.020 kb on + strand, within Xcc-8004.3307.1at 3211.020 kb on + strand, within Xcc-8004.3307.1at 3211.021 kb on - strand, within Xcc-8004.3307.1at 3211.021 kb on - strand, within Xcc-8004.3307.1at 3211.021 kb on - strand, within Xcc-8004.3307.1at 3211.205 kb on + strandat 3211.225 kb on + strandat 3211.225 kb on + strandat 3211.225 kb on + strandat 3211.225 kb on + strandat 3211.226 kb on - strandat 3211.226 kb on - strandat 3211.226 kb on - strandat 3211.226 kb on - strandat 3211.226 kb on - strandat 3211.226 kb on - strandat 3212.169 kb on - strandat 3212.169 kb on - strandat 3212.454 kb on + strandat 3212.454 kb on + strandat 3212.455 kb on - strandat 3212.455 kb on - strandat 3212.585 kb on - strand, within Xcc-8004.3310.1at 3212.614 kb on + strand, within Xcc-8004.3310.1at 3212.615 kb on - strand, within Xcc-8004.3310.1at 3212.749 kb on + strand, within Xcc-8004.3310.1at 3212.777 kb on - strand, within Xcc-8004.3310.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid 10mM (C)
remove
3,210,618 + Xcc-8004.3307.1 0.52 +0.3
3,210,618 + Xcc-8004.3307.1 0.52 -0.3
3,210,618 + Xcc-8004.3307.1 0.52 -0.9
3,210,618 + Xcc-8004.3307.1 0.52 -0.2
3,210,618 + Xcc-8004.3307.1 0.52 +0.1
3,210,618 + Xcc-8004.3307.1 0.52 +0.6
3,210,618 + Xcc-8004.3307.1 0.52 +1.2
3,210,618 + Xcc-8004.3307.1 0.52 -2.4
3,210,618 + Xcc-8004.3307.1 0.52 -0.6
3,210,618 + Xcc-8004.3307.1 0.52 -1.3
3,210,618 + Xcc-8004.3307.1 0.52 +1.4
3,210,619 - Xcc-8004.3307.1 0.52 -0.5
3,210,619 - Xcc-8004.3307.1 0.52 -0.1
3,210,619 - Xcc-8004.3307.1 0.52 -0.6
3,210,619 - Xcc-8004.3307.1 0.52 +0.8
3,210,619 - Xcc-8004.3307.1 0.52 -0.6
3,210,619 - Xcc-8004.3307.1 0.52 +0.5
3,210,619 - Xcc-8004.3307.1 0.52 -0.7
3,210,619 - Xcc-8004.3307.1 0.52 -0.1
3,210,653 + Xcc-8004.3307.1 0.55 +3.0
3,210,654 - Xcc-8004.3307.1 0.55 -0.7
3,210,654 - Xcc-8004.3307.1 0.55 -1.6
3,210,726 + Xcc-8004.3307.1 0.61 -0.8
3,210,726 + Xcc-8004.3307.1 0.61 +1.3
3,210,726 + Xcc-8004.3307.1 0.61 -0.5
3,210,726 + Xcc-8004.3307.1 0.61 -0.4
3,210,726 + Xcc-8004.3307.1 0.61 +1.4
3,210,726 + Xcc-8004.3307.1 0.61 -0.3
3,210,726 + Xcc-8004.3307.1 0.61 +0.8
3,210,726 + Xcc-8004.3307.1 0.61 +0.8
3,210,726 + Xcc-8004.3307.1 0.61 +0.6
3,210,726 + Xcc-8004.3307.1 0.61 -0.6
3,210,727 - Xcc-8004.3307.1 0.61 +0.4
3,210,727 - Xcc-8004.3307.1 0.61 -1.4
3,210,727 - Xcc-8004.3307.1 0.61 +1.2
3,210,727 - Xcc-8004.3307.1 0.61 -1.0
3,210,727 - Xcc-8004.3307.1 0.61 -0.3
3,210,727 - Xcc-8004.3307.1 0.61 +1.1
3,210,727 - Xcc-8004.3307.1 0.61 -1.9
3,210,735 + Xcc-8004.3307.1 0.62 +0.1
3,210,735 + Xcc-8004.3307.1 0.62 -1.7
3,210,735 + Xcc-8004.3307.1 0.62 -2.2
3,210,736 - Xcc-8004.3307.1 0.62 +0.1
3,210,736 - Xcc-8004.3307.1 0.62 -0.1
3,210,814 - Xcc-8004.3307.1 0.68 +0.3
3,211,020 + Xcc-8004.3307.1 0.84 -1.0
3,211,020 + Xcc-8004.3307.1 0.84 -0.2
3,211,020 + Xcc-8004.3307.1 0.84 -0.9
3,211,021 - Xcc-8004.3307.1 0.84 -0.6
3,211,021 - Xcc-8004.3307.1 0.84 +0.1
3,211,021 - Xcc-8004.3307.1 0.84 -1.2
3,211,205 + +0.7
3,211,225 + -0.7
3,211,225 + +2.3
3,211,225 + +0.1
3,211,225 + -0.9
3,211,226 - -1.1
3,211,226 - +0.3
3,211,226 - +0.1
3,211,226 - -0.2
3,211,226 - -0.5
3,211,226 - +1.5
3,212,169 - -0.8
3,212,169 - -0.9
3,212,454 + +1.3
3,212,454 + -1.0
3,212,455 - +0.3
3,212,455 - -2.3
3,212,585 - Xcc-8004.3310.1 0.11 -1.5
3,212,614 + Xcc-8004.3310.1 0.12 -0.3
3,212,615 - Xcc-8004.3310.1 0.12 -0.6
3,212,749 + Xcc-8004.3310.1 0.16 +3.0
3,212,777 - Xcc-8004.3310.1 0.17 -1.1

Or see this region's nucleotide sequence