Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3022.1

Experiment: Citric Acid 10mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3021.1 and Xcc-8004.3022.1 are separated by 556 nucleotidesXcc-8004.3022.1 and Xcc-8004.3024.1 overlap by 4 nucleotides Xcc-8004.3021.1: Xcc-8004.3021.1 - hypothetical protein, at 2,951,964 to 2,952,623 Xcc-8004.3021.1 Xcc-8004.3022.1: Xcc-8004.3022.1 - Putative deoxyribonuclease similar to YcfH, type 4, at 2,953,180 to 2,953,908 Xcc-8004.3022.1 Xcc-8004.3024.1: Xcc-8004.3024.1 - FIG014574: hypothetical protein, at 2,953,905 to 2,955,191 Xcc-8004.3024.1 Position (kb) 2953 2954Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2952.411 kb on - strand, within Xcc-8004.3021.1at 2952.411 kb on - strand, within Xcc-8004.3021.1at 2952.433 kb on + strand, within Xcc-8004.3021.1at 2952.434 kb on - strand, within Xcc-8004.3021.1at 2952.523 kb on + strand, within Xcc-8004.3021.1at 2952.545 kb on + strand, within Xcc-8004.3021.1at 2952.545 kb on + strand, within Xcc-8004.3021.1at 2952.546 kb on - strand, within Xcc-8004.3021.1at 2952.546 kb on - strand, within Xcc-8004.3021.1at 2952.546 kb on - strand, within Xcc-8004.3021.1at 2952.548 kb on + strand, within Xcc-8004.3021.1at 2952.549 kb on - strand, within Xcc-8004.3021.1at 2952.549 kb on - strand, within Xcc-8004.3021.1at 2952.596 kb on + strandat 2952.596 kb on + strandat 2952.596 kb on + strandat 2952.597 kb on - strandat 2952.597 kb on - strandat 2952.620 kb on - strandat 2952.620 kb on - strandat 2952.646 kb on + strandat 2952.678 kb on + strandat 2952.742 kb on + strandat 2952.743 kb on - strandat 2952.769 kb on + strandat 2952.769 kb on + strandat 2952.769 kb on + strandat 2952.770 kb on - strandat 2952.923 kb on + strandat 2952.923 kb on + strandat 2952.923 kb on + strandat 2952.923 kb on + strandat 2952.923 kb on + strandat 2952.924 kb on - strandat 2952.924 kb on - strandat 2952.924 kb on - strandat 2952.924 kb on - strandat 2952.924 kb on - strandat 2952.927 kb on + strandat 2952.927 kb on + strandat 2952.927 kb on + strandat 2952.927 kb on + strandat 2952.928 kb on - strandat 2952.933 kb on + strandat 2952.934 kb on - strandat 2952.977 kb on + strandat 2953.010 kb on + strandat 2953.010 kb on + strandat 2953.013 kb on + strandat 2953.013 kb on + strandat 2953.013 kb on + strandat 2953.013 kb on + strandat 2953.013 kb on + strandat 2953.013 kb on + strandat 2953.014 kb on - strandat 2953.014 kb on - strandat 2953.014 kb on - strandat 2953.014 kb on - strandat 2953.014 kb on - strandat 2953.014 kb on - strandat 2953.075 kb on + strandat 2953.151 kb on - strandat 2953.151 kb on - strandat 2953.161 kb on - strandat 2953.167 kb on + strandat 2953.181 kb on + strandat 2953.264 kb on - strand, within Xcc-8004.3022.1at 2953.307 kb on + strand, within Xcc-8004.3022.1at 2953.314 kb on + strand, within Xcc-8004.3022.1at 2953.314 kb on + strand, within Xcc-8004.3022.1at 2953.314 kb on + strand, within Xcc-8004.3022.1at 2953.315 kb on - strand, within Xcc-8004.3022.1at 2953.315 kb on - strand, within Xcc-8004.3022.1at 2953.338 kb on + strand, within Xcc-8004.3022.1at 2953.338 kb on + strand, within Xcc-8004.3022.1at 2953.339 kb on - strand, within Xcc-8004.3022.1at 2953.345 kb on - strand, within Xcc-8004.3022.1at 2953.360 kb on - strand, within Xcc-8004.3022.1at 2953.543 kb on - strand, within Xcc-8004.3022.1at 2953.560 kb on + strand, within Xcc-8004.3022.1at 2953.560 kb on + strand, within Xcc-8004.3022.1at 2953.560 kb on + strand, within Xcc-8004.3022.1at 2953.560 kb on + strand, within Xcc-8004.3022.1at 2953.561 kb on - strand, within Xcc-8004.3022.1at 2953.561 kb on - strand, within Xcc-8004.3022.1at 2953.561 kb on - strand, within Xcc-8004.3022.1at 2953.615 kb on - strand, within Xcc-8004.3022.1at 2953.615 kb on - strand, within Xcc-8004.3022.1at 2953.615 kb on - strand, within Xcc-8004.3022.1at 2953.667 kb on + strand, within Xcc-8004.3022.1at 2953.667 kb on + strand, within Xcc-8004.3022.1at 2953.667 kb on + strand, within Xcc-8004.3022.1at 2953.667 kb on + strand, within Xcc-8004.3022.1at 2953.667 kb on + strand, within Xcc-8004.3022.1at 2953.667 kb on + strand, within Xcc-8004.3022.1at 2953.668 kb on - strand, within Xcc-8004.3022.1at 2953.682 kb on - strand, within Xcc-8004.3022.1at 2953.697 kb on - strand, within Xcc-8004.3022.1at 2953.697 kb on - strand, within Xcc-8004.3022.1at 2953.752 kb on + strand, within Xcc-8004.3022.1at 2953.752 kb on + strand, within Xcc-8004.3022.1at 2953.752 kb on + strand, within Xcc-8004.3022.1at 2953.753 kb on - strand, within Xcc-8004.3022.1at 2953.753 kb on - strand, within Xcc-8004.3022.1at 2953.753 kb on - strand, within Xcc-8004.3022.1at 2953.753 kb on - strand, within Xcc-8004.3022.1at 2953.756 kb on + strand, within Xcc-8004.3022.1at 2953.756 kb on + strand, within Xcc-8004.3022.1at 2953.756 kb on + strand, within Xcc-8004.3022.1at 2953.756 kb on + strand, within Xcc-8004.3022.1at 2953.756 kb on + strand, within Xcc-8004.3022.1at 2953.756 kb on + strand, within Xcc-8004.3022.1at 2953.756 kb on + strand, within Xcc-8004.3022.1at 2953.757 kb on - strand, within Xcc-8004.3022.1at 2953.758 kb on + strand, within Xcc-8004.3022.1at 2953.758 kb on + strand, within Xcc-8004.3022.1at 2953.758 kb on + strand, within Xcc-8004.3022.1at 2953.856 kb on - strandat 2953.877 kb on + strandat 2953.878 kb on - strandat 2953.878 kb on - strandat 2953.886 kb on - strandat 2953.886 kb on - strandat 2953.886 kb on - strandat 2953.959 kb on + strandat 2953.960 kb on - strandat 2953.960 kb on - strandat 2953.999 kb on + strandat 2954.000 kb on - strandat 2954.128 kb on + strand, within Xcc-8004.3024.1at 2954.128 kb on + strand, within Xcc-8004.3024.1at 2954.128 kb on + strand, within Xcc-8004.3024.1at 2954.128 kb on + strand, within Xcc-8004.3024.1at 2954.129 kb on - strand, within Xcc-8004.3024.1at 2954.129 kb on - strand, within Xcc-8004.3024.1at 2954.136 kb on - strand, within Xcc-8004.3024.1at 2954.161 kb on + strand, within Xcc-8004.3024.1at 2954.162 kb on - strand, within Xcc-8004.3024.1at 2954.189 kb on + strand, within Xcc-8004.3024.1at 2954.189 kb on + strand, within Xcc-8004.3024.1at 2954.189 kb on + strand, within Xcc-8004.3024.1at 2954.190 kb on - strand, within Xcc-8004.3024.1at 2954.190 kb on - strand, within Xcc-8004.3024.1at 2954.209 kb on + strand, within Xcc-8004.3024.1at 2954.210 kb on - strand, within Xcc-8004.3024.1at 2954.210 kb on - strand, within Xcc-8004.3024.1at 2954.210 kb on - strand, within Xcc-8004.3024.1at 2954.210 kb on - strand, within Xcc-8004.3024.1at 2954.215 kb on + strand, within Xcc-8004.3024.1at 2954.238 kb on + strand, within Xcc-8004.3024.1at 2954.239 kb on - strand, within Xcc-8004.3024.1at 2954.259 kb on - strand, within Xcc-8004.3024.1at 2954.262 kb on + strand, within Xcc-8004.3024.1at 2954.265 kb on + strand, within Xcc-8004.3024.1at 2954.266 kb on - strand, within Xcc-8004.3024.1at 2954.317 kb on + strand, within Xcc-8004.3024.1at 2954.318 kb on - strand, within Xcc-8004.3024.1at 2954.356 kb on - strand, within Xcc-8004.3024.1at 2954.356 kb on - strand, within Xcc-8004.3024.1at 2954.356 kb on - strand, within Xcc-8004.3024.1at 2954.497 kb on + strand, within Xcc-8004.3024.1at 2954.520 kb on + strand, within Xcc-8004.3024.1at 2954.520 kb on + strand, within Xcc-8004.3024.1at 2954.521 kb on - strand, within Xcc-8004.3024.1at 2954.521 kb on - strand, within Xcc-8004.3024.1at 2954.521 kb on - strand, within Xcc-8004.3024.1at 2954.521 kb on - strand, within Xcc-8004.3024.1at 2954.628 kb on + strand, within Xcc-8004.3024.1at 2954.629 kb on - strand, within Xcc-8004.3024.1at 2954.675 kb on + strand, within Xcc-8004.3024.1at 2954.675 kb on + strand, within Xcc-8004.3024.1at 2954.675 kb on + strand, within Xcc-8004.3024.1at 2954.675 kb on + strand, within Xcc-8004.3024.1at 2954.675 kb on + strand, within Xcc-8004.3024.1at 2954.676 kb on - strand, within Xcc-8004.3024.1at 2954.676 kb on - strand, within Xcc-8004.3024.1at 2954.676 kb on - strand, within Xcc-8004.3024.1at 2954.676 kb on - strand, within Xcc-8004.3024.1at 2954.676 kb on - strand, within Xcc-8004.3024.1at 2954.676 kb on - strand, within Xcc-8004.3024.1at 2954.676 kb on - strand, within Xcc-8004.3024.1at 2954.676 kb on - strand, within Xcc-8004.3024.1at 2954.676 kb on - strand, within Xcc-8004.3024.1at 2954.676 kb on - strand, within Xcc-8004.3024.1at 2954.676 kb on - strand, within Xcc-8004.3024.1at 2954.676 kb on - strand, within Xcc-8004.3024.1at 2954.712 kb on + strand, within Xcc-8004.3024.1at 2954.713 kb on - strand, within Xcc-8004.3024.1at 2954.713 kb on - strand, within Xcc-8004.3024.1at 2954.721 kb on - strand, within Xcc-8004.3024.1at 2954.721 kb on - strand, within Xcc-8004.3024.1at 2954.730 kb on + strand, within Xcc-8004.3024.1at 2954.731 kb on - strand, within Xcc-8004.3024.1at 2954.735 kb on + strand, within Xcc-8004.3024.1at 2954.736 kb on - strand, within Xcc-8004.3024.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid 10mM (C)
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2,952,411 - Xcc-8004.3021.1 0.68 +0.1
2,952,411 - Xcc-8004.3021.1 0.68 +0.0
2,952,433 + Xcc-8004.3021.1 0.71 +1.1
2,952,434 - Xcc-8004.3021.1 0.71 -0.7
2,952,523 + Xcc-8004.3021.1 0.85 -0.9
2,952,545 + Xcc-8004.3021.1 0.88 +1.0
2,952,545 + Xcc-8004.3021.1 0.88 +0.5
2,952,546 - Xcc-8004.3021.1 0.88 -0.4
2,952,546 - Xcc-8004.3021.1 0.88 -1.4
2,952,546 - Xcc-8004.3021.1 0.88 +0.4
2,952,548 + Xcc-8004.3021.1 0.88 +0.0
2,952,549 - Xcc-8004.3021.1 0.89 +0.4
2,952,549 - Xcc-8004.3021.1 0.89 -0.3
2,952,596 + -0.6
2,952,596 + +0.9
2,952,596 + +0.6
2,952,597 - +0.1
2,952,597 - -0.6
2,952,620 - -0.6
2,952,620 - +0.2
2,952,646 + -0.5
2,952,678 + +0.5
2,952,742 + +1.7
2,952,743 - -0.8
2,952,769 + -0.8
2,952,769 + +1.0
2,952,769 + -1.2
2,952,770 - +0.2
2,952,923 + -0.2
2,952,923 + -1.5
2,952,923 + -1.3
2,952,923 + +0.5
2,952,923 + +0.4
2,952,924 - -0.6
2,952,924 - +0.8
2,952,924 - +0.2
2,952,924 - -0.4
2,952,924 - -0.3
2,952,927 + -1.9
2,952,927 + +2.9
2,952,927 + +1.5
2,952,927 + +0.0
2,952,928 - -2.1
2,952,933 + +1.7
2,952,934 - -0.7
2,952,977 + -1.1
2,953,010 + -0.3
2,953,010 + -1.1
2,953,013 + +0.9
2,953,013 + +0.1
2,953,013 + +0.6
2,953,013 + +0.6
2,953,013 + +1.9
2,953,013 + +1.5
2,953,014 - +0.4
2,953,014 - -0.6
2,953,014 - -0.8
2,953,014 - -0.1
2,953,014 - +0.9
2,953,014 - +0.3
2,953,075 + +3.0
2,953,151 - +0.5
2,953,151 - +0.2
2,953,161 - +0.5
2,953,167 + +0.0
2,953,181 + -0.7
2,953,264 - Xcc-8004.3022.1 0.12 +1.5
2,953,307 + Xcc-8004.3022.1 0.17 +0.3
2,953,314 + Xcc-8004.3022.1 0.18 -0.2
2,953,314 + Xcc-8004.3022.1 0.18 +0.7
2,953,314 + Xcc-8004.3022.1 0.18 +2.3
2,953,315 - Xcc-8004.3022.1 0.19 +0.2
2,953,315 - Xcc-8004.3022.1 0.19 +0.1
2,953,338 + Xcc-8004.3022.1 0.22 +1.4
2,953,338 + Xcc-8004.3022.1 0.22 -1.1
2,953,339 - Xcc-8004.3022.1 0.22 -0.1
2,953,345 - Xcc-8004.3022.1 0.23 -0.2
2,953,360 - Xcc-8004.3022.1 0.25 -0.9
2,953,543 - Xcc-8004.3022.1 0.50 +0.2
2,953,560 + Xcc-8004.3022.1 0.52 -2.0
2,953,560 + Xcc-8004.3022.1 0.52 -1.1
2,953,560 + Xcc-8004.3022.1 0.52 +1.6
2,953,560 + Xcc-8004.3022.1 0.52 +0.7
2,953,561 - Xcc-8004.3022.1 0.52 +0.2
2,953,561 - Xcc-8004.3022.1 0.52 -1.2
2,953,561 - Xcc-8004.3022.1 0.52 -0.7
2,953,615 - Xcc-8004.3022.1 0.60 +0.3
2,953,615 - Xcc-8004.3022.1 0.60 +0.7
2,953,615 - Xcc-8004.3022.1 0.60 -1.0
2,953,667 + Xcc-8004.3022.1 0.67 -0.4
2,953,667 + Xcc-8004.3022.1 0.67 +1.2
2,953,667 + Xcc-8004.3022.1 0.67 +0.3
2,953,667 + Xcc-8004.3022.1 0.67 +0.5
2,953,667 + Xcc-8004.3022.1 0.67 -1.5
2,953,667 + Xcc-8004.3022.1 0.67 +3.3
2,953,668 - Xcc-8004.3022.1 0.67 +1.2
2,953,682 - Xcc-8004.3022.1 0.69 +2.1
2,953,697 - Xcc-8004.3022.1 0.71 -1.1
2,953,697 - Xcc-8004.3022.1 0.71 +1.3
2,953,752 + Xcc-8004.3022.1 0.78 +0.1
2,953,752 + Xcc-8004.3022.1 0.78 +0.2
2,953,752 + Xcc-8004.3022.1 0.78 -0.4
2,953,753 - Xcc-8004.3022.1 0.79 +0.7
2,953,753 - Xcc-8004.3022.1 0.79 -0.6
2,953,753 - Xcc-8004.3022.1 0.79 +0.9
2,953,753 - Xcc-8004.3022.1 0.79 +1.2
2,953,756 + Xcc-8004.3022.1 0.79 +1.1
2,953,756 + Xcc-8004.3022.1 0.79 -0.7
2,953,756 + Xcc-8004.3022.1 0.79 +1.4
2,953,756 + Xcc-8004.3022.1 0.79 +0.8
2,953,756 + Xcc-8004.3022.1 0.79 -0.2
2,953,756 + Xcc-8004.3022.1 0.79 +0.9
2,953,756 + Xcc-8004.3022.1 0.79 -0.1
2,953,757 - Xcc-8004.3022.1 0.79 -1.1
2,953,758 + Xcc-8004.3022.1 0.79 -0.6
2,953,758 + Xcc-8004.3022.1 0.79 +1.9
2,953,758 + Xcc-8004.3022.1 0.79 +0.2
2,953,856 - -0.5
2,953,877 + +0.3
2,953,878 - +0.3
2,953,878 - -1.7
2,953,886 - +0.7
2,953,886 - -2.7
2,953,886 - -1.3
2,953,959 + +0.1
2,953,960 - +0.4
2,953,960 - -0.8
2,953,999 + +0.1
2,954,000 - -0.4
2,954,128 + Xcc-8004.3024.1 0.17 -0.3
2,954,128 + Xcc-8004.3024.1 0.17 +0.1
2,954,128 + Xcc-8004.3024.1 0.17 -1.6
2,954,128 + Xcc-8004.3024.1 0.17 -0.1
2,954,129 - Xcc-8004.3024.1 0.17 -2.5
2,954,129 - Xcc-8004.3024.1 0.17 -0.2
2,954,136 - Xcc-8004.3024.1 0.18 +0.2
2,954,161 + Xcc-8004.3024.1 0.20 -0.8
2,954,162 - Xcc-8004.3024.1 0.20 +1.7
2,954,189 + Xcc-8004.3024.1 0.22 -2.6
2,954,189 + Xcc-8004.3024.1 0.22 -0.5
2,954,189 + Xcc-8004.3024.1 0.22 -0.5
2,954,190 - Xcc-8004.3024.1 0.22 -1.2
2,954,190 - Xcc-8004.3024.1 0.22 +1.0
2,954,209 + Xcc-8004.3024.1 0.24 +0.9
2,954,210 - Xcc-8004.3024.1 0.24 +0.4
2,954,210 - Xcc-8004.3024.1 0.24 -0.9
2,954,210 - Xcc-8004.3024.1 0.24 -0.6
2,954,210 - Xcc-8004.3024.1 0.24 -0.5
2,954,215 + Xcc-8004.3024.1 0.24 +0.8
2,954,238 + Xcc-8004.3024.1 0.26 -0.6
2,954,239 - Xcc-8004.3024.1 0.26 -0.4
2,954,259 - Xcc-8004.3024.1 0.28 -0.3
2,954,262 + Xcc-8004.3024.1 0.28 +0.2
2,954,265 + Xcc-8004.3024.1 0.28 -1.3
2,954,266 - Xcc-8004.3024.1 0.28 -0.3
2,954,317 + Xcc-8004.3024.1 0.32 -0.1
2,954,318 - Xcc-8004.3024.1 0.32 -0.4
2,954,356 - Xcc-8004.3024.1 0.35 -1.0
2,954,356 - Xcc-8004.3024.1 0.35 -2.6
2,954,356 - Xcc-8004.3024.1 0.35 -2.8
2,954,497 + Xcc-8004.3024.1 0.46 -0.6
2,954,520 + Xcc-8004.3024.1 0.48 +0.1
2,954,520 + Xcc-8004.3024.1 0.48 -0.4
2,954,521 - Xcc-8004.3024.1 0.48 +0.5
2,954,521 - Xcc-8004.3024.1 0.48 +0.2
2,954,521 - Xcc-8004.3024.1 0.48 -2.6
2,954,521 - Xcc-8004.3024.1 0.48 -1.5
2,954,628 + Xcc-8004.3024.1 0.56 +0.1
2,954,629 - Xcc-8004.3024.1 0.56 +1.0
2,954,675 + Xcc-8004.3024.1 0.60 +1.2
2,954,675 + Xcc-8004.3024.1 0.60 +0.0
2,954,675 + Xcc-8004.3024.1 0.60 +1.9
2,954,675 + Xcc-8004.3024.1 0.60 -0.6
2,954,675 + Xcc-8004.3024.1 0.60 -0.6
2,954,676 - Xcc-8004.3024.1 0.60 -0.1
2,954,676 - Xcc-8004.3024.1 0.60 -1.1
2,954,676 - Xcc-8004.3024.1 0.60 +1.4
2,954,676 - Xcc-8004.3024.1 0.60 -0.9
2,954,676 - Xcc-8004.3024.1 0.60 -0.1
2,954,676 - Xcc-8004.3024.1 0.60 +1.4
2,954,676 - Xcc-8004.3024.1 0.60 +0.6
2,954,676 - Xcc-8004.3024.1 0.60 -1.1
2,954,676 - Xcc-8004.3024.1 0.60 -0.4
2,954,676 - Xcc-8004.3024.1 0.60 -0.2
2,954,676 - Xcc-8004.3024.1 0.60 -0.9
2,954,676 - Xcc-8004.3024.1 0.60 -1.6
2,954,712 + Xcc-8004.3024.1 0.63 +0.9
2,954,713 - Xcc-8004.3024.1 0.63 -1.8
2,954,713 - Xcc-8004.3024.1 0.63 +0.8
2,954,721 - Xcc-8004.3024.1 0.63 -1.3
2,954,721 - Xcc-8004.3024.1 0.63 +2.3
2,954,730 + Xcc-8004.3024.1 0.64 -0.3
2,954,731 - Xcc-8004.3024.1 0.64 +0.4
2,954,735 + Xcc-8004.3024.1 0.64 +0.9
2,954,736 - Xcc-8004.3024.1 0.65 +0.2

Or see this region's nucleotide sequence