Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3020.1

Experiment: Citric Acid 10mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.3018.1 and Xcc-8004.3019.1 are separated by 171 nucleotidesXcc-8004.3019.1 and Xcc-8004.3020.1 overlap by 29 nucleotidesXcc-8004.3020.1 and Xcc-8004.3021.1 are separated by 115 nucleotides Xcc-8004.3018.1: Xcc-8004.3018.1 - hypothetical protein, at 2,949,514 to 2,950,464 Xcc-8004.3018.1 Xcc-8004.3019.1: Xcc-8004.3019.1 - hypothetical protein, at 2,950,636 to 2,951,343 Xcc-8004.3019.1 Xcc-8004.3020.1: Xcc-8004.3020.1 - hypothetical protein, at 2,951,315 to 2,951,848 Xcc-8004.3020.1 Xcc-8004.3021.1: Xcc-8004.3021.1 - hypothetical protein, at 2,951,964 to 2,952,623 Xcc-8004.3021.1 Position (kb) 2951 2952Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2950.523 kb on - strandat 2950.523 kb on - strandat 2950.523 kb on - strandat 2950.523 kb on - strandat 2950.677 kb on + strandat 2950.737 kb on + strand, within Xcc-8004.3019.1at 2950.737 kb on + strand, within Xcc-8004.3019.1at 2950.737 kb on + strand, within Xcc-8004.3019.1at 2950.738 kb on - strand, within Xcc-8004.3019.1at 2950.738 kb on - strand, within Xcc-8004.3019.1at 2950.738 kb on - strand, within Xcc-8004.3019.1at 2950.738 kb on - strand, within Xcc-8004.3019.1at 2950.738 kb on - strand, within Xcc-8004.3019.1at 2950.757 kb on + strand, within Xcc-8004.3019.1at 2950.757 kb on + strand, within Xcc-8004.3019.1at 2950.758 kb on - strand, within Xcc-8004.3019.1at 2950.758 kb on - strand, within Xcc-8004.3019.1at 2950.758 kb on - strand, within Xcc-8004.3019.1at 2950.853 kb on - strand, within Xcc-8004.3019.1at 2950.853 kb on - strand, within Xcc-8004.3019.1at 2950.888 kb on - strand, within Xcc-8004.3019.1at 2950.888 kb on - strand, within Xcc-8004.3019.1at 2950.897 kb on - strand, within Xcc-8004.3019.1at 2950.967 kb on + strand, within Xcc-8004.3019.1at 2950.968 kb on - strand, within Xcc-8004.3019.1at 2950.968 kb on - strand, within Xcc-8004.3019.1at 2950.974 kb on + strand, within Xcc-8004.3019.1at 2950.975 kb on - strand, within Xcc-8004.3019.1at 2950.997 kb on + strand, within Xcc-8004.3019.1at 2950.997 kb on + strand, within Xcc-8004.3019.1at 2950.997 kb on + strand, within Xcc-8004.3019.1at 2950.998 kb on - strand, within Xcc-8004.3019.1at 2950.998 kb on - strand, within Xcc-8004.3019.1at 2951.006 kb on + strand, within Xcc-8004.3019.1at 2951.006 kb on + strand, within Xcc-8004.3019.1at 2951.006 kb on + strand, within Xcc-8004.3019.1at 2951.006 kb on + strand, within Xcc-8004.3019.1at 2951.006 kb on + strand, within Xcc-8004.3019.1at 2951.007 kb on - strand, within Xcc-8004.3019.1at 2951.007 kb on - strand, within Xcc-8004.3019.1at 2951.007 kb on - strand, within Xcc-8004.3019.1at 2951.007 kb on - strand, within Xcc-8004.3019.1at 2951.104 kb on - strand, within Xcc-8004.3019.1at 2951.111 kb on + strand, within Xcc-8004.3019.1at 2951.122 kb on + strand, within Xcc-8004.3019.1at 2951.122 kb on + strand, within Xcc-8004.3019.1at 2951.123 kb on - strand, within Xcc-8004.3019.1at 2951.123 kb on - strand, within Xcc-8004.3019.1at 2951.176 kb on + strand, within Xcc-8004.3019.1at 2951.176 kb on + strand, within Xcc-8004.3019.1at 2951.177 kb on - strand, within Xcc-8004.3019.1at 2951.177 kb on - strand, within Xcc-8004.3019.1at 2951.177 kb on - strand, within Xcc-8004.3019.1at 2951.177 kb on - strand, within Xcc-8004.3019.1at 2951.232 kb on + strand, within Xcc-8004.3019.1at 2951.232 kb on + strand, within Xcc-8004.3019.1at 2951.233 kb on - strand, within Xcc-8004.3019.1at 2951.264 kb on - strand, within Xcc-8004.3019.1at 2951.296 kb on - strandat 2951.324 kb on + strandat 2951.325 kb on - strandat 2951.325 kb on - strandat 2951.325 kb on - strandat 2951.473 kb on + strand, within Xcc-8004.3020.1at 2951.473 kb on + strand, within Xcc-8004.3020.1at 2951.475 kb on + strand, within Xcc-8004.3020.1at 2951.475 kb on + strand, within Xcc-8004.3020.1at 2951.476 kb on - strand, within Xcc-8004.3020.1at 2951.498 kb on + strand, within Xcc-8004.3020.1at 2951.498 kb on + strand, within Xcc-8004.3020.1at 2951.513 kb on + strand, within Xcc-8004.3020.1at 2951.513 kb on + strand, within Xcc-8004.3020.1at 2951.514 kb on - strand, within Xcc-8004.3020.1at 2951.530 kb on + strand, within Xcc-8004.3020.1at 2951.560 kb on + strand, within Xcc-8004.3020.1at 2951.560 kb on + strand, within Xcc-8004.3020.1at 2951.625 kb on + strand, within Xcc-8004.3020.1at 2951.626 kb on - strand, within Xcc-8004.3020.1at 2951.626 kb on - strand, within Xcc-8004.3020.1at 2951.771 kb on + strand, within Xcc-8004.3020.1at 2951.771 kb on + strand, within Xcc-8004.3020.1at 2951.810 kb on - strandat 2951.810 kb on - strandat 2951.823 kb on + strandat 2951.823 kb on + strandat 2951.824 kb on - strandat 2951.824 kb on - strandat 2951.899 kb on + strandat 2951.899 kb on + strandat 2951.899 kb on + strandat 2951.899 kb on + strandat 2951.900 kb on - strandat 2951.900 kb on - strandat 2951.987 kb on + strandat 2951.988 kb on - strandat 2952.064 kb on + strand, within Xcc-8004.3021.1at 2952.064 kb on + strand, within Xcc-8004.3021.1at 2952.064 kb on + strand, within Xcc-8004.3021.1at 2952.064 kb on + strand, within Xcc-8004.3021.1at 2952.064 kb on + strand, within Xcc-8004.3021.1at 2952.065 kb on - strand, within Xcc-8004.3021.1at 2952.065 kb on - strand, within Xcc-8004.3021.1at 2952.065 kb on - strand, within Xcc-8004.3021.1at 2952.078 kb on - strand, within Xcc-8004.3021.1at 2952.099 kb on + strand, within Xcc-8004.3021.1at 2952.099 kb on + strand, within Xcc-8004.3021.1at 2952.100 kb on - strand, within Xcc-8004.3021.1at 2952.100 kb on - strand, within Xcc-8004.3021.1at 2952.105 kb on + strand, within Xcc-8004.3021.1at 2952.105 kb on + strand, within Xcc-8004.3021.1at 2952.106 kb on - strand, within Xcc-8004.3021.1at 2952.106 kb on - strand, within Xcc-8004.3021.1at 2952.106 kb on - strand, within Xcc-8004.3021.1at 2952.162 kb on + strand, within Xcc-8004.3021.1at 2952.162 kb on + strand, within Xcc-8004.3021.1at 2952.162 kb on + strand, within Xcc-8004.3021.1at 2952.163 kb on - strand, within Xcc-8004.3021.1at 2952.411 kb on - strand, within Xcc-8004.3021.1at 2952.411 kb on - strand, within Xcc-8004.3021.1at 2952.433 kb on + strand, within Xcc-8004.3021.1at 2952.434 kb on - strand, within Xcc-8004.3021.1at 2952.523 kb on + strand, within Xcc-8004.3021.1at 2952.545 kb on + strand, within Xcc-8004.3021.1at 2952.545 kb on + strand, within Xcc-8004.3021.1at 2952.546 kb on - strand, within Xcc-8004.3021.1at 2952.546 kb on - strand, within Xcc-8004.3021.1at 2952.546 kb on - strand, within Xcc-8004.3021.1at 2952.548 kb on + strand, within Xcc-8004.3021.1at 2952.549 kb on - strand, within Xcc-8004.3021.1at 2952.549 kb on - strand, within Xcc-8004.3021.1at 2952.596 kb on + strandat 2952.596 kb on + strandat 2952.596 kb on + strandat 2952.597 kb on - strandat 2952.597 kb on - strandat 2952.620 kb on - strandat 2952.620 kb on - strandat 2952.646 kb on + strandat 2952.678 kb on + strandat 2952.742 kb on + strandat 2952.743 kb on - strandat 2952.769 kb on + strandat 2952.769 kb on + strandat 2952.769 kb on + strandat 2952.770 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid 10mM (C)
remove
2,950,523 - -0.7
2,950,523 - +0.1
2,950,523 - +0.0
2,950,523 - +0.4
2,950,677 + +1.1
2,950,737 + Xcc-8004.3019.1 0.14 +0.2
2,950,737 + Xcc-8004.3019.1 0.14 +1.7
2,950,737 + Xcc-8004.3019.1 0.14 -1.1
2,950,738 - Xcc-8004.3019.1 0.14 -1.1
2,950,738 - Xcc-8004.3019.1 0.14 -1.4
2,950,738 - Xcc-8004.3019.1 0.14 -0.9
2,950,738 - Xcc-8004.3019.1 0.14 +0.3
2,950,738 - Xcc-8004.3019.1 0.14 +0.9
2,950,757 + Xcc-8004.3019.1 0.17 +0.6
2,950,757 + Xcc-8004.3019.1 0.17 -0.1
2,950,758 - Xcc-8004.3019.1 0.17 +0.7
2,950,758 - Xcc-8004.3019.1 0.17 -1.2
2,950,758 - Xcc-8004.3019.1 0.17 +1.3
2,950,853 - Xcc-8004.3019.1 0.31 +1.0
2,950,853 - Xcc-8004.3019.1 0.31 -0.3
2,950,888 - Xcc-8004.3019.1 0.36 +0.9
2,950,888 - Xcc-8004.3019.1 0.36 -0.6
2,950,897 - Xcc-8004.3019.1 0.37 -2.5
2,950,967 + Xcc-8004.3019.1 0.47 +0.8
2,950,968 - Xcc-8004.3019.1 0.47 +0.4
2,950,968 - Xcc-8004.3019.1 0.47 +0.8
2,950,974 + Xcc-8004.3019.1 0.48 +0.0
2,950,975 - Xcc-8004.3019.1 0.48 +0.1
2,950,997 + Xcc-8004.3019.1 0.51 +1.6
2,950,997 + Xcc-8004.3019.1 0.51 -0.3
2,950,997 + Xcc-8004.3019.1 0.51 +2.0
2,950,998 - Xcc-8004.3019.1 0.51 +1.2
2,950,998 - Xcc-8004.3019.1 0.51 -3.0
2,951,006 + Xcc-8004.3019.1 0.52 +0.5
2,951,006 + Xcc-8004.3019.1 0.52 +1.1
2,951,006 + Xcc-8004.3019.1 0.52 +0.8
2,951,006 + Xcc-8004.3019.1 0.52 +0.9
2,951,006 + Xcc-8004.3019.1 0.52 +0.8
2,951,007 - Xcc-8004.3019.1 0.52 -0.9
2,951,007 - Xcc-8004.3019.1 0.52 -0.5
2,951,007 - Xcc-8004.3019.1 0.52 -0.7
2,951,007 - Xcc-8004.3019.1 0.52 +0.1
2,951,104 - Xcc-8004.3019.1 0.66 +0.7
2,951,111 + Xcc-8004.3019.1 0.67 -0.4
2,951,122 + Xcc-8004.3019.1 0.69 +2.3
2,951,122 + Xcc-8004.3019.1 0.69 -2.7
2,951,123 - Xcc-8004.3019.1 0.69 +1.7
2,951,123 - Xcc-8004.3019.1 0.69 -0.0
2,951,176 + Xcc-8004.3019.1 0.76 +0.7
2,951,176 + Xcc-8004.3019.1 0.76 +1.1
2,951,177 - Xcc-8004.3019.1 0.76 -1.6
2,951,177 - Xcc-8004.3019.1 0.76 -0.6
2,951,177 - Xcc-8004.3019.1 0.76 +1.0
2,951,177 - Xcc-8004.3019.1 0.76 +1.3
2,951,232 + Xcc-8004.3019.1 0.84 -0.4
2,951,232 + Xcc-8004.3019.1 0.84 -0.5
2,951,233 - Xcc-8004.3019.1 0.84 +0.4
2,951,264 - Xcc-8004.3019.1 0.89 -0.7
2,951,296 - +0.6
2,951,324 + -0.9
2,951,325 - -1.0
2,951,325 - -1.2
2,951,325 - +0.2
2,951,473 + Xcc-8004.3020.1 0.30 -0.0
2,951,473 + Xcc-8004.3020.1 0.30 -0.2
2,951,475 + Xcc-8004.3020.1 0.30 +0.2
2,951,475 + Xcc-8004.3020.1 0.30 +2.3
2,951,476 - Xcc-8004.3020.1 0.30 -1.0
2,951,498 + Xcc-8004.3020.1 0.34 -0.3
2,951,498 + Xcc-8004.3020.1 0.34 +0.1
2,951,513 + Xcc-8004.3020.1 0.37 -0.1
2,951,513 + Xcc-8004.3020.1 0.37 +0.1
2,951,514 - Xcc-8004.3020.1 0.37 -0.5
2,951,530 + Xcc-8004.3020.1 0.40 +0.9
2,951,560 + Xcc-8004.3020.1 0.46 -0.2
2,951,560 + Xcc-8004.3020.1 0.46 +1.3
2,951,625 + Xcc-8004.3020.1 0.58 +0.4
2,951,626 - Xcc-8004.3020.1 0.58 +1.1
2,951,626 - Xcc-8004.3020.1 0.58 +1.1
2,951,771 + Xcc-8004.3020.1 0.85 -0.6
2,951,771 + Xcc-8004.3020.1 0.85 -0.2
2,951,810 - -2.0
2,951,810 - +0.4
2,951,823 + -0.3
2,951,823 + +2.5
2,951,824 - +0.2
2,951,824 - +0.6
2,951,899 + +0.5
2,951,899 + -0.8
2,951,899 + +1.2
2,951,899 + -1.6
2,951,900 - +2.0
2,951,900 - -1.0
2,951,987 + +0.0
2,951,988 - -1.1
2,952,064 + Xcc-8004.3021.1 0.15 +0.1
2,952,064 + Xcc-8004.3021.1 0.15 +3.3
2,952,064 + Xcc-8004.3021.1 0.15 -0.4
2,952,064 + Xcc-8004.3021.1 0.15 -2.4
2,952,064 + Xcc-8004.3021.1 0.15 -0.8
2,952,065 - Xcc-8004.3021.1 0.15 -3.1
2,952,065 - Xcc-8004.3021.1 0.15 +0.4
2,952,065 - Xcc-8004.3021.1 0.15 -1.0
2,952,078 - Xcc-8004.3021.1 0.17 -0.1
2,952,099 + Xcc-8004.3021.1 0.20 -0.9
2,952,099 + Xcc-8004.3021.1 0.20 -0.4
2,952,100 - Xcc-8004.3021.1 0.21 +0.1
2,952,100 - Xcc-8004.3021.1 0.21 -0.2
2,952,105 + Xcc-8004.3021.1 0.21 -1.7
2,952,105 + Xcc-8004.3021.1 0.21 -2.5
2,952,106 - Xcc-8004.3021.1 0.22 -0.4
2,952,106 - Xcc-8004.3021.1 0.22 -1.7
2,952,106 - Xcc-8004.3021.1 0.22 -0.6
2,952,162 + Xcc-8004.3021.1 0.30 -0.5
2,952,162 + Xcc-8004.3021.1 0.30 +0.1
2,952,162 + Xcc-8004.3021.1 0.30 -1.0
2,952,163 - Xcc-8004.3021.1 0.30 -0.9
2,952,411 - Xcc-8004.3021.1 0.68 +0.1
2,952,411 - Xcc-8004.3021.1 0.68 +0.0
2,952,433 + Xcc-8004.3021.1 0.71 +1.1
2,952,434 - Xcc-8004.3021.1 0.71 -0.7
2,952,523 + Xcc-8004.3021.1 0.85 -0.9
2,952,545 + Xcc-8004.3021.1 0.88 +1.0
2,952,545 + Xcc-8004.3021.1 0.88 +0.5
2,952,546 - Xcc-8004.3021.1 0.88 -0.4
2,952,546 - Xcc-8004.3021.1 0.88 -1.4
2,952,546 - Xcc-8004.3021.1 0.88 +0.4
2,952,548 + Xcc-8004.3021.1 0.88 +0.0
2,952,549 - Xcc-8004.3021.1 0.89 +0.4
2,952,549 - Xcc-8004.3021.1 0.89 -0.3
2,952,596 + -0.6
2,952,596 + +0.9
2,952,596 + +0.6
2,952,597 - +0.1
2,952,597 - -0.6
2,952,620 - -0.6
2,952,620 - +0.2
2,952,646 + -0.5
2,952,678 + +0.5
2,952,742 + +1.7
2,952,743 - -0.8
2,952,769 + -0.8
2,952,769 + +1.0
2,952,769 + -1.2
2,952,770 - +0.2

Or see this region's nucleotide sequence