Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3018.1

Experiment: Citric Acid 10mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3016.1 and Xcc-8004.3017.1 overlap by 4 nucleotidesXcc-8004.3017.1 and Xcc-8004.3018.1 are separated by 72 nucleotidesXcc-8004.3018.1 and Xcc-8004.3019.1 are separated by 171 nucleotidesXcc-8004.3019.1 and Xcc-8004.3020.1 overlap by 29 nucleotides Xcc-8004.3016.1: Xcc-8004.3016.1 - hypothetical protein, at 2,947,931 to 2,948,887 Xcc-8004.3016.1 Xcc-8004.3017.1: Xcc-8004.3017.1 - hypothetical protein, at 2,948,884 to 2,949,441 Xcc-8004.3017.1 Xcc-8004.3018.1: Xcc-8004.3018.1 - hypothetical protein, at 2,949,514 to 2,950,464 Xcc-8004.3018.1 Xcc-8004.3019.1: Xcc-8004.3019.1 - hypothetical protein, at 2,950,636 to 2,951,343 Xcc-8004.3019.1 Xcc-8004.3020.1: Xcc-8004.3020.1 - hypothetical protein, at 2,951,315 to 2,951,848 Xcc-8004.3020.1 Position (kb) 2949 2950 2951Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2948.583 kb on - strand, within Xcc-8004.3016.1at 2948.690 kb on + strand, within Xcc-8004.3016.1at 2948.950 kb on + strand, within Xcc-8004.3017.1at 2948.950 kb on + strand, within Xcc-8004.3017.1at 2948.950 kb on + strand, within Xcc-8004.3017.1at 2948.966 kb on + strand, within Xcc-8004.3017.1at 2949.002 kb on - strand, within Xcc-8004.3017.1at 2949.002 kb on - strand, within Xcc-8004.3017.1at 2949.051 kb on - strand, within Xcc-8004.3017.1at 2949.051 kb on - strand, within Xcc-8004.3017.1at 2949.051 kb on - strand, within Xcc-8004.3017.1at 2949.051 kb on - strand, within Xcc-8004.3017.1at 2949.211 kb on + strand, within Xcc-8004.3017.1at 2949.212 kb on - strand, within Xcc-8004.3017.1at 2949.214 kb on + strand, within Xcc-8004.3017.1at 2949.214 kb on + strand, within Xcc-8004.3017.1at 2949.277 kb on + strand, within Xcc-8004.3017.1at 2949.385 kb on + strand, within Xcc-8004.3017.1at 2949.465 kb on + strandat 2949.465 kb on + strandat 2949.520 kb on - strandat 2949.520 kb on - strandat 2949.541 kb on + strandat 2949.542 kb on - strandat 2949.545 kb on + strandat 2949.546 kb on - strandat 2949.546 kb on - strandat 2949.546 kb on - strandat 2949.678 kb on + strand, within Xcc-8004.3018.1at 2949.679 kb on - strand, within Xcc-8004.3018.1at 2949.968 kb on + strand, within Xcc-8004.3018.1at 2949.969 kb on - strand, within Xcc-8004.3018.1at 2949.969 kb on - strand, within Xcc-8004.3018.1at 2950.523 kb on - strandat 2950.523 kb on - strandat 2950.523 kb on - strandat 2950.523 kb on - strandat 2950.677 kb on + strandat 2950.737 kb on + strand, within Xcc-8004.3019.1at 2950.737 kb on + strand, within Xcc-8004.3019.1at 2950.737 kb on + strand, within Xcc-8004.3019.1at 2950.738 kb on - strand, within Xcc-8004.3019.1at 2950.738 kb on - strand, within Xcc-8004.3019.1at 2950.738 kb on - strand, within Xcc-8004.3019.1at 2950.738 kb on - strand, within Xcc-8004.3019.1at 2950.738 kb on - strand, within Xcc-8004.3019.1at 2950.757 kb on + strand, within Xcc-8004.3019.1at 2950.757 kb on + strand, within Xcc-8004.3019.1at 2950.758 kb on - strand, within Xcc-8004.3019.1at 2950.758 kb on - strand, within Xcc-8004.3019.1at 2950.758 kb on - strand, within Xcc-8004.3019.1at 2950.853 kb on - strand, within Xcc-8004.3019.1at 2950.853 kb on - strand, within Xcc-8004.3019.1at 2950.888 kb on - strand, within Xcc-8004.3019.1at 2950.888 kb on - strand, within Xcc-8004.3019.1at 2950.897 kb on - strand, within Xcc-8004.3019.1at 2950.967 kb on + strand, within Xcc-8004.3019.1at 2950.968 kb on - strand, within Xcc-8004.3019.1at 2950.968 kb on - strand, within Xcc-8004.3019.1at 2950.974 kb on + strand, within Xcc-8004.3019.1at 2950.975 kb on - strand, within Xcc-8004.3019.1at 2950.997 kb on + strand, within Xcc-8004.3019.1at 2950.997 kb on + strand, within Xcc-8004.3019.1at 2950.997 kb on + strand, within Xcc-8004.3019.1at 2950.998 kb on - strand, within Xcc-8004.3019.1at 2950.998 kb on - strand, within Xcc-8004.3019.1at 2951.006 kb on + strand, within Xcc-8004.3019.1at 2951.006 kb on + strand, within Xcc-8004.3019.1at 2951.006 kb on + strand, within Xcc-8004.3019.1at 2951.006 kb on + strand, within Xcc-8004.3019.1at 2951.006 kb on + strand, within Xcc-8004.3019.1at 2951.007 kb on - strand, within Xcc-8004.3019.1at 2951.007 kb on - strand, within Xcc-8004.3019.1at 2951.007 kb on - strand, within Xcc-8004.3019.1at 2951.007 kb on - strand, within Xcc-8004.3019.1at 2951.104 kb on - strand, within Xcc-8004.3019.1at 2951.111 kb on + strand, within Xcc-8004.3019.1at 2951.122 kb on + strand, within Xcc-8004.3019.1at 2951.122 kb on + strand, within Xcc-8004.3019.1at 2951.123 kb on - strand, within Xcc-8004.3019.1at 2951.123 kb on - strand, within Xcc-8004.3019.1at 2951.176 kb on + strand, within Xcc-8004.3019.1at 2951.176 kb on + strand, within Xcc-8004.3019.1at 2951.177 kb on - strand, within Xcc-8004.3019.1at 2951.177 kb on - strand, within Xcc-8004.3019.1at 2951.177 kb on - strand, within Xcc-8004.3019.1at 2951.177 kb on - strand, within Xcc-8004.3019.1at 2951.232 kb on + strand, within Xcc-8004.3019.1at 2951.232 kb on + strand, within Xcc-8004.3019.1at 2951.233 kb on - strand, within Xcc-8004.3019.1at 2951.264 kb on - strand, within Xcc-8004.3019.1at 2951.296 kb on - strandat 2951.324 kb on + strandat 2951.325 kb on - strandat 2951.325 kb on - strandat 2951.325 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid 10mM (C)
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2,948,583 - Xcc-8004.3016.1 0.68 +0.2
2,948,690 + Xcc-8004.3016.1 0.79 -1.1
2,948,950 + Xcc-8004.3017.1 0.12 -0.9
2,948,950 + Xcc-8004.3017.1 0.12 -1.9
2,948,950 + Xcc-8004.3017.1 0.12 +1.7
2,948,966 + Xcc-8004.3017.1 0.15 -1.3
2,949,002 - Xcc-8004.3017.1 0.21 -0.7
2,949,002 - Xcc-8004.3017.1 0.21 +0.7
2,949,051 - Xcc-8004.3017.1 0.30 -0.8
2,949,051 - Xcc-8004.3017.1 0.30 +0.2
2,949,051 - Xcc-8004.3017.1 0.30 +0.1
2,949,051 - Xcc-8004.3017.1 0.30 +2.2
2,949,211 + Xcc-8004.3017.1 0.59 +0.3
2,949,212 - Xcc-8004.3017.1 0.59 +0.1
2,949,214 + Xcc-8004.3017.1 0.59 -0.2
2,949,214 + Xcc-8004.3017.1 0.59 -0.9
2,949,277 + Xcc-8004.3017.1 0.70 -1.6
2,949,385 + Xcc-8004.3017.1 0.90 +0.0
2,949,465 + +0.7
2,949,465 + -1.2
2,949,520 - +0.3
2,949,520 - +1.3
2,949,541 + +1.8
2,949,542 - +1.6
2,949,545 + -1.6
2,949,546 - +0.4
2,949,546 - -0.6
2,949,546 - -2.3
2,949,678 + Xcc-8004.3018.1 0.17 -2.9
2,949,679 - Xcc-8004.3018.1 0.17 -0.6
2,949,968 + Xcc-8004.3018.1 0.48 +0.3
2,949,969 - Xcc-8004.3018.1 0.48 -0.1
2,949,969 - Xcc-8004.3018.1 0.48 -0.2
2,950,523 - -0.7
2,950,523 - +0.1
2,950,523 - +0.0
2,950,523 - +0.4
2,950,677 + +1.1
2,950,737 + Xcc-8004.3019.1 0.14 +0.2
2,950,737 + Xcc-8004.3019.1 0.14 +1.7
2,950,737 + Xcc-8004.3019.1 0.14 -1.1
2,950,738 - Xcc-8004.3019.1 0.14 -1.1
2,950,738 - Xcc-8004.3019.1 0.14 -1.4
2,950,738 - Xcc-8004.3019.1 0.14 -0.9
2,950,738 - Xcc-8004.3019.1 0.14 +0.3
2,950,738 - Xcc-8004.3019.1 0.14 +0.9
2,950,757 + Xcc-8004.3019.1 0.17 +0.6
2,950,757 + Xcc-8004.3019.1 0.17 -0.1
2,950,758 - Xcc-8004.3019.1 0.17 +0.7
2,950,758 - Xcc-8004.3019.1 0.17 -1.2
2,950,758 - Xcc-8004.3019.1 0.17 +1.3
2,950,853 - Xcc-8004.3019.1 0.31 +1.0
2,950,853 - Xcc-8004.3019.1 0.31 -0.3
2,950,888 - Xcc-8004.3019.1 0.36 +0.9
2,950,888 - Xcc-8004.3019.1 0.36 -0.6
2,950,897 - Xcc-8004.3019.1 0.37 -2.5
2,950,967 + Xcc-8004.3019.1 0.47 +0.8
2,950,968 - Xcc-8004.3019.1 0.47 +0.4
2,950,968 - Xcc-8004.3019.1 0.47 +0.8
2,950,974 + Xcc-8004.3019.1 0.48 +0.0
2,950,975 - Xcc-8004.3019.1 0.48 +0.1
2,950,997 + Xcc-8004.3019.1 0.51 +1.6
2,950,997 + Xcc-8004.3019.1 0.51 -0.3
2,950,997 + Xcc-8004.3019.1 0.51 +2.0
2,950,998 - Xcc-8004.3019.1 0.51 +1.2
2,950,998 - Xcc-8004.3019.1 0.51 -3.0
2,951,006 + Xcc-8004.3019.1 0.52 +0.5
2,951,006 + Xcc-8004.3019.1 0.52 +1.1
2,951,006 + Xcc-8004.3019.1 0.52 +0.8
2,951,006 + Xcc-8004.3019.1 0.52 +0.9
2,951,006 + Xcc-8004.3019.1 0.52 +0.8
2,951,007 - Xcc-8004.3019.1 0.52 -0.9
2,951,007 - Xcc-8004.3019.1 0.52 -0.5
2,951,007 - Xcc-8004.3019.1 0.52 -0.7
2,951,007 - Xcc-8004.3019.1 0.52 +0.1
2,951,104 - Xcc-8004.3019.1 0.66 +0.7
2,951,111 + Xcc-8004.3019.1 0.67 -0.4
2,951,122 + Xcc-8004.3019.1 0.69 +2.3
2,951,122 + Xcc-8004.3019.1 0.69 -2.7
2,951,123 - Xcc-8004.3019.1 0.69 +1.7
2,951,123 - Xcc-8004.3019.1 0.69 -0.0
2,951,176 + Xcc-8004.3019.1 0.76 +0.7
2,951,176 + Xcc-8004.3019.1 0.76 +1.1
2,951,177 - Xcc-8004.3019.1 0.76 -1.6
2,951,177 - Xcc-8004.3019.1 0.76 -0.6
2,951,177 - Xcc-8004.3019.1 0.76 +1.0
2,951,177 - Xcc-8004.3019.1 0.76 +1.3
2,951,232 + Xcc-8004.3019.1 0.84 -0.4
2,951,232 + Xcc-8004.3019.1 0.84 -0.5
2,951,233 - Xcc-8004.3019.1 0.84 +0.4
2,951,264 - Xcc-8004.3019.1 0.89 -0.7
2,951,296 - +0.6
2,951,324 + -0.9
2,951,325 - -1.0
2,951,325 - -1.2
2,951,325 - +0.2

Or see this region's nucleotide sequence