Experiment: Citric Acid 10mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.2951.1 and Xcc-8004.2952.1 are separated by 108 nucleotides Xcc-8004.2952.1 and Xcc-8004.2953.1 are separated by 91 nucleotides Xcc-8004.2953.1 and Xcc-8004.2954.1 are separated by 99 nucleotides
Xcc-8004.2951.1: Xcc-8004.2951.1 - Histidyl-tRNA synthetase (EC 6.1.1.21), at 2,874,294 to 2,875,727
Xcc-8004.2951.1
Xcc-8004.2952.1: Xcc-8004.2952.1 - transcriptional regulator, Crp/Fnr family, at 2,875,836 to 2,876,597
Xcc-8004.2952.1
Xcc-8004.2953.1: Xcc-8004.2953.1 - FIG01210451: hypothetical protein, at 2,876,689 to 2,877,429
Xcc-8004.2953.1
Xcc-8004.2954.1: Xcc-8004.2954.1 - Threonine synthase (EC 4.2.3.1), at 2,877,529 to 2,878,836
Xcc-8004.2954.1
Position (kb)
2875
2876
2877 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2875.770 kb on + strand at 2875.803 kb on + strand at 2875.803 kb on + strand at 2875.804 kb on - strand at 2875.804 kb on - strand at 2875.804 kb on - strand at 2875.804 kb on - strand at 2875.839 kb on + strand at 2875.839 kb on + strand at 2875.839 kb on + strand at 2875.839 kb on + strand at 2875.839 kb on + strand at 2875.839 kb on + strand at 2875.840 kb on - strand at 2875.840 kb on - strand at 2876.010 kb on + strand, within Xcc-8004.2952.1 at 2876.010 kb on + strand, within Xcc-8004.2952.1 at 2876.010 kb on + strand, within Xcc-8004.2952.1 at 2876.010 kb on + strand, within Xcc-8004.2952.1 at 2876.010 kb on + strand, within Xcc-8004.2952.1 at 2876.010 kb on + strand, within Xcc-8004.2952.1 at 2876.010 kb on + strand, within Xcc-8004.2952.1 at 2876.010 kb on + strand, within Xcc-8004.2952.1 at 2876.010 kb on + strand, within Xcc-8004.2952.1 at 2876.010 kb on + strand, within Xcc-8004.2952.1 at 2876.011 kb on - strand, within Xcc-8004.2952.1 at 2876.061 kb on + strand, within Xcc-8004.2952.1 at 2876.061 kb on + strand, within Xcc-8004.2952.1 at 2876.061 kb on + strand, within Xcc-8004.2952.1 at 2876.061 kb on + strand, within Xcc-8004.2952.1 at 2876.061 kb on + strand, within Xcc-8004.2952.1 at 2876.061 kb on + strand, within Xcc-8004.2952.1 at 2876.061 kb on + strand, within Xcc-8004.2952.1 at 2876.061 kb on + strand, within Xcc-8004.2952.1 at 2876.062 kb on - strand, within Xcc-8004.2952.1 at 2876.062 kb on - strand, within Xcc-8004.2952.1 at 2876.148 kb on + strand, within Xcc-8004.2952.1 at 2876.148 kb on + strand, within Xcc-8004.2952.1 at 2876.148 kb on + strand, within Xcc-8004.2952.1 at 2876.148 kb on + strand, within Xcc-8004.2952.1 at 2876.148 kb on + strand, within Xcc-8004.2952.1 at 2876.149 kb on - strand, within Xcc-8004.2952.1 at 2876.149 kb on - strand, within Xcc-8004.2952.1 at 2876.149 kb on - strand, within Xcc-8004.2952.1 at 2876.149 kb on - strand, within Xcc-8004.2952.1 at 2876.186 kb on + strand, within Xcc-8004.2952.1 at 2876.256 kb on + strand, within Xcc-8004.2952.1 at 2876.257 kb on - strand, within Xcc-8004.2952.1 at 2876.257 kb on - strand, within Xcc-8004.2952.1 at 2876.559 kb on + strand at 2876.570 kb on - strand at 2876.690 kb on + strand at 2876.771 kb on + strand, within Xcc-8004.2953.1 at 2876.772 kb on - strand, within Xcc-8004.2953.1 at 2876.774 kb on + strand, within Xcc-8004.2953.1 at 2876.774 kb on + strand, within Xcc-8004.2953.1 at 2876.774 kb on + strand, within Xcc-8004.2953.1 at 2876.774 kb on + strand, within Xcc-8004.2953.1 at 2876.774 kb on + strand, within Xcc-8004.2953.1 at 2876.774 kb on + strand, within Xcc-8004.2953.1 at 2876.775 kb on - strand, within Xcc-8004.2953.1 at 2876.775 kb on - strand, within Xcc-8004.2953.1 at 2876.775 kb on - strand, within Xcc-8004.2953.1 at 2876.775 kb on - strand, within Xcc-8004.2953.1 at 2876.775 kb on - strand, within Xcc-8004.2953.1 at 2876.775 kb on - strand, within Xcc-8004.2953.1 at 2876.775 kb on - strand, within Xcc-8004.2953.1 at 2876.775 kb on - strand, within Xcc-8004.2953.1 at 2876.775 kb on - strand, within Xcc-8004.2953.1 at 2876.805 kb on + strand, within Xcc-8004.2953.1 at 2876.805 kb on + strand, within Xcc-8004.2953.1 at 2876.805 kb on + strand, within Xcc-8004.2953.1 at 2876.806 kb on - strand, within Xcc-8004.2953.1 at 2876.806 kb on - strand, within Xcc-8004.2953.1 at 2876.900 kb on + strand, within Xcc-8004.2953.1 at 2876.900 kb on + strand, within Xcc-8004.2953.1 at 2876.900 kb on + strand, within Xcc-8004.2953.1 at 2876.900 kb on + strand, within Xcc-8004.2953.1 at 2876.901 kb on - strand, within Xcc-8004.2953.1 at 2876.901 kb on - strand, within Xcc-8004.2953.1 at 2876.901 kb on - strand, within Xcc-8004.2953.1 at 2876.981 kb on + strand, within Xcc-8004.2953.1 at 2876.982 kb on - strand, within Xcc-8004.2953.1 at 2876.999 kb on + strand, within Xcc-8004.2953.1 at 2876.999 kb on + strand, within Xcc-8004.2953.1 at 2876.999 kb on + strand, within Xcc-8004.2953.1 at 2876.999 kb on + strand, within Xcc-8004.2953.1 at 2876.999 kb on + strand, within Xcc-8004.2953.1 at 2876.999 kb on + strand, within Xcc-8004.2953.1 at 2877.000 kb on - strand, within Xcc-8004.2953.1 at 2877.000 kb on - strand, within Xcc-8004.2953.1 at 2877.000 kb on - strand, within Xcc-8004.2953.1 at 2877.085 kb on - strand, within Xcc-8004.2953.1 at 2877.142 kb on + strand, within Xcc-8004.2953.1 at 2877.176 kb on + strand, within Xcc-8004.2953.1 at 2877.177 kb on - strand, within Xcc-8004.2953.1 at 2877.322 kb on - strand, within Xcc-8004.2953.1 at 2877.322 kb on - strand, within Xcc-8004.2953.1 at 2877.422 kb on + strand at 2877.423 kb on - strand at 2877.423 kb on - strand at 2877.474 kb on + strand at 2877.474 kb on + strand at 2877.475 kb on - strand at 2877.475 kb on - strand at 2877.475 kb on - strand at 2877.480 kb on + strand at 2877.480 kb on + strand at 2877.481 kb on - strand at 2877.481 kb on - strand at 2877.481 kb on - strand at 2877.481 kb on - strand at 2877.481 kb on - strand at 2877.569 kb on + strand at 2877.569 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Citric Acid 10mM (C) remove 2,875,770 + +0.3 2,875,803 + +0.1 2,875,803 + +1.7 2,875,804 - +0.7 2,875,804 - +0.6 2,875,804 - +0.7 2,875,804 - -0.3 2,875,839 + -0.8 2,875,839 + -0.3 2,875,839 + -0.7 2,875,839 + -1.1 2,875,839 + -1.1 2,875,839 + -2.8 2,875,840 - -0.3 2,875,840 - -0.5 2,876,010 + Xcc-8004.2952.1 0.23 -0.8 2,876,010 + Xcc-8004.2952.1 0.23 -1.3 2,876,010 + Xcc-8004.2952.1 0.23 -0.6 2,876,010 + Xcc-8004.2952.1 0.23 -2.8 2,876,010 + Xcc-8004.2952.1 0.23 -2.3 2,876,010 + Xcc-8004.2952.1 0.23 -0.6 2,876,010 + Xcc-8004.2952.1 0.23 -0.9 2,876,010 + Xcc-8004.2952.1 0.23 -1.1 2,876,010 + Xcc-8004.2952.1 0.23 -1.1 2,876,010 + Xcc-8004.2952.1 0.23 -1.4 2,876,011 - Xcc-8004.2952.1 0.23 +0.8 2,876,061 + Xcc-8004.2952.1 0.30 +2.7 2,876,061 + Xcc-8004.2952.1 0.30 +0.1 2,876,061 + Xcc-8004.2952.1 0.30 -1.2 2,876,061 + Xcc-8004.2952.1 0.30 -3.8 2,876,061 + Xcc-8004.2952.1 0.30 -1.3 2,876,061 + Xcc-8004.2952.1 0.30 +0.0 2,876,061 + Xcc-8004.2952.1 0.30 -1.1 2,876,061 + Xcc-8004.2952.1 0.30 -4.1 2,876,062 - Xcc-8004.2952.1 0.30 -1.8 2,876,062 - Xcc-8004.2952.1 0.30 -1.4 2,876,148 + Xcc-8004.2952.1 0.41 -1.8 2,876,148 + Xcc-8004.2952.1 0.41 -1.9 2,876,148 + Xcc-8004.2952.1 0.41 -1.3 2,876,148 + Xcc-8004.2952.1 0.41 -0.2 2,876,148 + Xcc-8004.2952.1 0.41 -0.2 2,876,149 - Xcc-8004.2952.1 0.41 -1.0 2,876,149 - Xcc-8004.2952.1 0.41 -1.0 2,876,149 - Xcc-8004.2952.1 0.41 -1.3 2,876,149 - Xcc-8004.2952.1 0.41 -1.1 2,876,186 + Xcc-8004.2952.1 0.46 -0.3 2,876,256 + Xcc-8004.2952.1 0.55 -2.6 2,876,257 - Xcc-8004.2952.1 0.55 -2.8 2,876,257 - Xcc-8004.2952.1 0.55 -3.5 2,876,559 + -0.8 2,876,570 - -2.1 2,876,690 + +0.7 2,876,771 + Xcc-8004.2953.1 0.11 +0.7 2,876,772 - Xcc-8004.2953.1 0.11 +0.6 2,876,774 + Xcc-8004.2953.1 0.11 +1.4 2,876,774 + Xcc-8004.2953.1 0.11 +0.5 2,876,774 + Xcc-8004.2953.1 0.11 +2.9 2,876,774 + Xcc-8004.2953.1 0.11 +0.7 2,876,774 + Xcc-8004.2953.1 0.11 -1.6 2,876,774 + Xcc-8004.2953.1 0.11 +0.2 2,876,775 - Xcc-8004.2953.1 0.12 +0.6 2,876,775 - Xcc-8004.2953.1 0.12 +1.2 2,876,775 - Xcc-8004.2953.1 0.12 -0.3 2,876,775 - Xcc-8004.2953.1 0.12 -1.4 2,876,775 - Xcc-8004.2953.1 0.12 -0.2 2,876,775 - Xcc-8004.2953.1 0.12 +1.1 2,876,775 - Xcc-8004.2953.1 0.12 -0.5 2,876,775 - Xcc-8004.2953.1 0.12 -1.1 2,876,775 - Xcc-8004.2953.1 0.12 -0.8 2,876,805 + Xcc-8004.2953.1 0.16 +0.4 2,876,805 + Xcc-8004.2953.1 0.16 -0.5 2,876,805 + Xcc-8004.2953.1 0.16 -0.9 2,876,806 - Xcc-8004.2953.1 0.16 +0.0 2,876,806 - Xcc-8004.2953.1 0.16 -1.2 2,876,900 + Xcc-8004.2953.1 0.28 +0.0 2,876,900 + Xcc-8004.2953.1 0.28 +0.2 2,876,900 + Xcc-8004.2953.1 0.28 -0.7 2,876,900 + Xcc-8004.2953.1 0.28 -2.5 2,876,901 - Xcc-8004.2953.1 0.29 -0.2 2,876,901 - Xcc-8004.2953.1 0.29 +1.3 2,876,901 - Xcc-8004.2953.1 0.29 +1.4 2,876,981 + Xcc-8004.2953.1 0.39 -0.8 2,876,982 - Xcc-8004.2953.1 0.40 -2.0 2,876,999 + Xcc-8004.2953.1 0.42 +1.4 2,876,999 + Xcc-8004.2953.1 0.42 +0.0 2,876,999 + Xcc-8004.2953.1 0.42 -1.3 2,876,999 + Xcc-8004.2953.1 0.42 -1.6 2,876,999 + Xcc-8004.2953.1 0.42 -3.5 2,876,999 + Xcc-8004.2953.1 0.42 -1.0 2,877,000 - Xcc-8004.2953.1 0.42 +0.6 2,877,000 - Xcc-8004.2953.1 0.42 +0.1 2,877,000 - Xcc-8004.2953.1 0.42 +0.3 2,877,085 - Xcc-8004.2953.1 0.53 -0.4 2,877,142 + Xcc-8004.2953.1 0.61 -1.4 2,877,176 + Xcc-8004.2953.1 0.66 -1.4 2,877,177 - Xcc-8004.2953.1 0.66 -0.0 2,877,322 - Xcc-8004.2953.1 0.85 -0.1 2,877,322 - Xcc-8004.2953.1 0.85 -1.0 2,877,422 + +0.7 2,877,423 - +1.0 2,877,423 - +1.0 2,877,474 + -1.3 2,877,474 + +0.7 2,877,475 - -1.6 2,877,475 - -0.9 2,877,475 - -0.2 2,877,480 + +2.1 2,877,480 + +1.0 2,877,481 - +0.8 2,877,481 - +0.9 2,877,481 - -1.4 2,877,481 - +1.0 2,877,481 - +0.7 2,877,569 + -0.3 2,877,569 + -3.4
Or see this region's nucleotide sequence