Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.2952.1

Experiment: Citric Acid 10mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.2951.1 and Xcc-8004.2952.1 are separated by 108 nucleotidesXcc-8004.2952.1 and Xcc-8004.2953.1 are separated by 91 nucleotidesXcc-8004.2953.1 and Xcc-8004.2954.1 are separated by 99 nucleotides Xcc-8004.2951.1: Xcc-8004.2951.1 - Histidyl-tRNA synthetase (EC 6.1.1.21), at 2,874,294 to 2,875,727 Xcc-8004.2951.1 Xcc-8004.2952.1: Xcc-8004.2952.1 - transcriptional regulator, Crp/Fnr family, at 2,875,836 to 2,876,597 Xcc-8004.2952.1 Xcc-8004.2953.1: Xcc-8004.2953.1 - FIG01210451: hypothetical protein, at 2,876,689 to 2,877,429 Xcc-8004.2953.1 Xcc-8004.2954.1: Xcc-8004.2954.1 - Threonine synthase (EC 4.2.3.1), at 2,877,529 to 2,878,836 Xcc-8004.2954.1 Position (kb) 2875 2876 2877Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2875.770 kb on + strandat 2875.803 kb on + strandat 2875.803 kb on + strandat 2875.804 kb on - strandat 2875.804 kb on - strandat 2875.804 kb on - strandat 2875.804 kb on - strandat 2875.839 kb on + strandat 2875.839 kb on + strandat 2875.839 kb on + strandat 2875.839 kb on + strandat 2875.839 kb on + strandat 2875.839 kb on + strandat 2875.840 kb on - strandat 2875.840 kb on - strandat 2876.010 kb on + strand, within Xcc-8004.2952.1at 2876.010 kb on + strand, within Xcc-8004.2952.1at 2876.010 kb on + strand, within Xcc-8004.2952.1at 2876.010 kb on + strand, within Xcc-8004.2952.1at 2876.010 kb on + strand, within Xcc-8004.2952.1at 2876.010 kb on + strand, within Xcc-8004.2952.1at 2876.010 kb on + strand, within Xcc-8004.2952.1at 2876.010 kb on + strand, within Xcc-8004.2952.1at 2876.010 kb on + strand, within Xcc-8004.2952.1at 2876.010 kb on + strand, within Xcc-8004.2952.1at 2876.011 kb on - strand, within Xcc-8004.2952.1at 2876.061 kb on + strand, within Xcc-8004.2952.1at 2876.061 kb on + strand, within Xcc-8004.2952.1at 2876.061 kb on + strand, within Xcc-8004.2952.1at 2876.061 kb on + strand, within Xcc-8004.2952.1at 2876.061 kb on + strand, within Xcc-8004.2952.1at 2876.061 kb on + strand, within Xcc-8004.2952.1at 2876.061 kb on + strand, within Xcc-8004.2952.1at 2876.061 kb on + strand, within Xcc-8004.2952.1at 2876.062 kb on - strand, within Xcc-8004.2952.1at 2876.062 kb on - strand, within Xcc-8004.2952.1at 2876.148 kb on + strand, within Xcc-8004.2952.1at 2876.148 kb on + strand, within Xcc-8004.2952.1at 2876.148 kb on + strand, within Xcc-8004.2952.1at 2876.148 kb on + strand, within Xcc-8004.2952.1at 2876.148 kb on + strand, within Xcc-8004.2952.1at 2876.149 kb on - strand, within Xcc-8004.2952.1at 2876.149 kb on - strand, within Xcc-8004.2952.1at 2876.149 kb on - strand, within Xcc-8004.2952.1at 2876.149 kb on - strand, within Xcc-8004.2952.1at 2876.186 kb on + strand, within Xcc-8004.2952.1at 2876.256 kb on + strand, within Xcc-8004.2952.1at 2876.257 kb on - strand, within Xcc-8004.2952.1at 2876.257 kb on - strand, within Xcc-8004.2952.1at 2876.559 kb on + strandat 2876.570 kb on - strandat 2876.690 kb on + strandat 2876.771 kb on + strand, within Xcc-8004.2953.1at 2876.772 kb on - strand, within Xcc-8004.2953.1at 2876.774 kb on + strand, within Xcc-8004.2953.1at 2876.774 kb on + strand, within Xcc-8004.2953.1at 2876.774 kb on + strand, within Xcc-8004.2953.1at 2876.774 kb on + strand, within Xcc-8004.2953.1at 2876.774 kb on + strand, within Xcc-8004.2953.1at 2876.774 kb on + strand, within Xcc-8004.2953.1at 2876.775 kb on - strand, within Xcc-8004.2953.1at 2876.775 kb on - strand, within Xcc-8004.2953.1at 2876.775 kb on - strand, within Xcc-8004.2953.1at 2876.775 kb on - strand, within Xcc-8004.2953.1at 2876.775 kb on - strand, within Xcc-8004.2953.1at 2876.775 kb on - strand, within Xcc-8004.2953.1at 2876.775 kb on - strand, within Xcc-8004.2953.1at 2876.775 kb on - strand, within Xcc-8004.2953.1at 2876.775 kb on - strand, within Xcc-8004.2953.1at 2876.805 kb on + strand, within Xcc-8004.2953.1at 2876.805 kb on + strand, within Xcc-8004.2953.1at 2876.805 kb on + strand, within Xcc-8004.2953.1at 2876.806 kb on - strand, within Xcc-8004.2953.1at 2876.806 kb on - strand, within Xcc-8004.2953.1at 2876.900 kb on + strand, within Xcc-8004.2953.1at 2876.900 kb on + strand, within Xcc-8004.2953.1at 2876.900 kb on + strand, within Xcc-8004.2953.1at 2876.900 kb on + strand, within Xcc-8004.2953.1at 2876.901 kb on - strand, within Xcc-8004.2953.1at 2876.901 kb on - strand, within Xcc-8004.2953.1at 2876.901 kb on - strand, within Xcc-8004.2953.1at 2876.981 kb on + strand, within Xcc-8004.2953.1at 2876.982 kb on - strand, within Xcc-8004.2953.1at 2876.999 kb on + strand, within Xcc-8004.2953.1at 2876.999 kb on + strand, within Xcc-8004.2953.1at 2876.999 kb on + strand, within Xcc-8004.2953.1at 2876.999 kb on + strand, within Xcc-8004.2953.1at 2876.999 kb on + strand, within Xcc-8004.2953.1at 2876.999 kb on + strand, within Xcc-8004.2953.1at 2877.000 kb on - strand, within Xcc-8004.2953.1at 2877.000 kb on - strand, within Xcc-8004.2953.1at 2877.000 kb on - strand, within Xcc-8004.2953.1at 2877.085 kb on - strand, within Xcc-8004.2953.1at 2877.142 kb on + strand, within Xcc-8004.2953.1at 2877.176 kb on + strand, within Xcc-8004.2953.1at 2877.177 kb on - strand, within Xcc-8004.2953.1at 2877.322 kb on - strand, within Xcc-8004.2953.1at 2877.322 kb on - strand, within Xcc-8004.2953.1at 2877.422 kb on + strandat 2877.423 kb on - strandat 2877.423 kb on - strandat 2877.474 kb on + strandat 2877.474 kb on + strandat 2877.475 kb on - strandat 2877.475 kb on - strandat 2877.475 kb on - strandat 2877.480 kb on + strandat 2877.480 kb on + strandat 2877.481 kb on - strandat 2877.481 kb on - strandat 2877.481 kb on - strandat 2877.481 kb on - strandat 2877.481 kb on - strandat 2877.569 kb on + strandat 2877.569 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid 10mM (C)
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2,875,770 + +0.3
2,875,803 + +0.1
2,875,803 + +1.7
2,875,804 - +0.7
2,875,804 - +0.6
2,875,804 - +0.7
2,875,804 - -0.3
2,875,839 + -0.8
2,875,839 + -0.3
2,875,839 + -0.7
2,875,839 + -1.1
2,875,839 + -1.1
2,875,839 + -2.8
2,875,840 - -0.3
2,875,840 - -0.5
2,876,010 + Xcc-8004.2952.1 0.23 -0.8
2,876,010 + Xcc-8004.2952.1 0.23 -1.3
2,876,010 + Xcc-8004.2952.1 0.23 -0.6
2,876,010 + Xcc-8004.2952.1 0.23 -2.8
2,876,010 + Xcc-8004.2952.1 0.23 -2.3
2,876,010 + Xcc-8004.2952.1 0.23 -0.6
2,876,010 + Xcc-8004.2952.1 0.23 -0.9
2,876,010 + Xcc-8004.2952.1 0.23 -1.1
2,876,010 + Xcc-8004.2952.1 0.23 -1.1
2,876,010 + Xcc-8004.2952.1 0.23 -1.4
2,876,011 - Xcc-8004.2952.1 0.23 +0.8
2,876,061 + Xcc-8004.2952.1 0.30 +2.7
2,876,061 + Xcc-8004.2952.1 0.30 +0.1
2,876,061 + Xcc-8004.2952.1 0.30 -1.2
2,876,061 + Xcc-8004.2952.1 0.30 -3.8
2,876,061 + Xcc-8004.2952.1 0.30 -1.3
2,876,061 + Xcc-8004.2952.1 0.30 +0.0
2,876,061 + Xcc-8004.2952.1 0.30 -1.1
2,876,061 + Xcc-8004.2952.1 0.30 -4.1
2,876,062 - Xcc-8004.2952.1 0.30 -1.8
2,876,062 - Xcc-8004.2952.1 0.30 -1.4
2,876,148 + Xcc-8004.2952.1 0.41 -1.8
2,876,148 + Xcc-8004.2952.1 0.41 -1.9
2,876,148 + Xcc-8004.2952.1 0.41 -1.3
2,876,148 + Xcc-8004.2952.1 0.41 -0.2
2,876,148 + Xcc-8004.2952.1 0.41 -0.2
2,876,149 - Xcc-8004.2952.1 0.41 -1.0
2,876,149 - Xcc-8004.2952.1 0.41 -1.0
2,876,149 - Xcc-8004.2952.1 0.41 -1.3
2,876,149 - Xcc-8004.2952.1 0.41 -1.1
2,876,186 + Xcc-8004.2952.1 0.46 -0.3
2,876,256 + Xcc-8004.2952.1 0.55 -2.6
2,876,257 - Xcc-8004.2952.1 0.55 -2.8
2,876,257 - Xcc-8004.2952.1 0.55 -3.5
2,876,559 + -0.8
2,876,570 - -2.1
2,876,690 + +0.7
2,876,771 + Xcc-8004.2953.1 0.11 +0.7
2,876,772 - Xcc-8004.2953.1 0.11 +0.6
2,876,774 + Xcc-8004.2953.1 0.11 +1.4
2,876,774 + Xcc-8004.2953.1 0.11 +0.5
2,876,774 + Xcc-8004.2953.1 0.11 +2.9
2,876,774 + Xcc-8004.2953.1 0.11 +0.7
2,876,774 + Xcc-8004.2953.1 0.11 -1.6
2,876,774 + Xcc-8004.2953.1 0.11 +0.2
2,876,775 - Xcc-8004.2953.1 0.12 +0.6
2,876,775 - Xcc-8004.2953.1 0.12 +1.2
2,876,775 - Xcc-8004.2953.1 0.12 -0.3
2,876,775 - Xcc-8004.2953.1 0.12 -1.4
2,876,775 - Xcc-8004.2953.1 0.12 -0.2
2,876,775 - Xcc-8004.2953.1 0.12 +1.1
2,876,775 - Xcc-8004.2953.1 0.12 -0.5
2,876,775 - Xcc-8004.2953.1 0.12 -1.1
2,876,775 - Xcc-8004.2953.1 0.12 -0.8
2,876,805 + Xcc-8004.2953.1 0.16 +0.4
2,876,805 + Xcc-8004.2953.1 0.16 -0.5
2,876,805 + Xcc-8004.2953.1 0.16 -0.9
2,876,806 - Xcc-8004.2953.1 0.16 +0.0
2,876,806 - Xcc-8004.2953.1 0.16 -1.2
2,876,900 + Xcc-8004.2953.1 0.28 +0.0
2,876,900 + Xcc-8004.2953.1 0.28 +0.2
2,876,900 + Xcc-8004.2953.1 0.28 -0.7
2,876,900 + Xcc-8004.2953.1 0.28 -2.5
2,876,901 - Xcc-8004.2953.1 0.29 -0.2
2,876,901 - Xcc-8004.2953.1 0.29 +1.3
2,876,901 - Xcc-8004.2953.1 0.29 +1.4
2,876,981 + Xcc-8004.2953.1 0.39 -0.8
2,876,982 - Xcc-8004.2953.1 0.40 -2.0
2,876,999 + Xcc-8004.2953.1 0.42 +1.4
2,876,999 + Xcc-8004.2953.1 0.42 +0.0
2,876,999 + Xcc-8004.2953.1 0.42 -1.3
2,876,999 + Xcc-8004.2953.1 0.42 -1.6
2,876,999 + Xcc-8004.2953.1 0.42 -3.5
2,876,999 + Xcc-8004.2953.1 0.42 -1.0
2,877,000 - Xcc-8004.2953.1 0.42 +0.6
2,877,000 - Xcc-8004.2953.1 0.42 +0.1
2,877,000 - Xcc-8004.2953.1 0.42 +0.3
2,877,085 - Xcc-8004.2953.1 0.53 -0.4
2,877,142 + Xcc-8004.2953.1 0.61 -1.4
2,877,176 + Xcc-8004.2953.1 0.66 -1.4
2,877,177 - Xcc-8004.2953.1 0.66 -0.0
2,877,322 - Xcc-8004.2953.1 0.85 -0.1
2,877,322 - Xcc-8004.2953.1 0.85 -1.0
2,877,422 + +0.7
2,877,423 - +1.0
2,877,423 - +1.0
2,877,474 + -1.3
2,877,474 + +0.7
2,877,475 - -1.6
2,877,475 - -0.9
2,877,475 - -0.2
2,877,480 + +2.1
2,877,480 + +1.0
2,877,481 - +0.8
2,877,481 - +0.9
2,877,481 - -1.4
2,877,481 - +1.0
2,877,481 - +0.7
2,877,569 + -0.3
2,877,569 + -3.4

Or see this region's nucleotide sequence