Experiment: Citric Acid 10mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.1878.1 and Xcc-8004.1879.1 are separated by 122 nucleotides Xcc-8004.1879.1 and Xcc-8004.1880.1 are separated by 0 nucleotides Xcc-8004.1880.1 and Xcc-8004.1881.1 are separated by 169 nucleotides
Xcc-8004.1878.1: Xcc-8004.1878.1 - Protein of unknown function DUF541, at 1,811,302 to 1,812,039
Xcc-8004.1878.1
Xcc-8004.1879.1: Xcc-8004.1879.1 - Septum formation protein Maf, at 1,812,162 to 1,812,734
Xcc-8004.1879.1
Xcc-8004.1880.1: Xcc-8004.1880.1 - Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-), at 1,812,735 to 1,814,234
Xcc-8004.1880.1
Xcc-8004.1881.1: Xcc-8004.1881.1 - FIG005080: Possible exported protein, at 1,814,404 to 1,818,294
Xcc-8004.1881.1
Position (kb) 1812
1813
1814
1815 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1811.802 kb on + strand, within Xcc-8004.1878.1 at 1811.802 kb on + strand, within Xcc-8004.1878.1 at 1811.802 kb on + strand, within Xcc-8004.1878.1 at 1811.803 kb on - strand, within Xcc-8004.1878.1 at 1811.803 kb on - strand, within Xcc-8004.1878.1 at 1811.803 kb on - strand, within Xcc-8004.1878.1 at 1811.803 kb on - strand, within Xcc-8004.1878.1 at 1811.951 kb on + strand, within Xcc-8004.1878.1 at 1811.951 kb on + strand, within Xcc-8004.1878.1 at 1811.951 kb on + strand, within Xcc-8004.1878.1 at 1811.951 kb on + strand, within Xcc-8004.1878.1 at 1811.951 kb on + strand, within Xcc-8004.1878.1 at 1811.951 kb on + strand, within Xcc-8004.1878.1 at 1811.952 kb on - strand, within Xcc-8004.1878.1 at 1811.952 kb on - strand, within Xcc-8004.1878.1 at 1811.952 kb on - strand, within Xcc-8004.1878.1 at 1811.952 kb on - strand, within Xcc-8004.1878.1 at 1812.033 kb on + strand at 1812.034 kb on - strand at 1812.034 kb on - strand at 1812.085 kb on + strand at 1812.085 kb on + strand at 1812.085 kb on + strand at 1812.086 kb on - strand at 1812.086 kb on - strand at 1812.086 kb on - strand at 1812.086 kb on - strand at 1812.086 kb on - strand at 1812.150 kb on + strand at 1812.150 kb on + strand at 1812.150 kb on + strand at 1812.150 kb on + strand at 1812.150 kb on + strand at 1812.150 kb on + strand at 1812.150 kb on + strand at 1812.150 kb on + strand at 1812.151 kb on - strand at 1812.151 kb on - strand at 1812.151 kb on - strand at 1812.151 kb on - strand at 1812.151 kb on - strand at 1812.151 kb on - strand at 1812.151 kb on - strand at 1812.151 kb on - strand at 1812.151 kb on - strand at 1812.151 kb on - strand at 1812.168 kb on + strand at 1812.169 kb on - strand at 1812.169 kb on - strand at 1812.169 kb on - strand at 1812.169 kb on - strand at 1812.285 kb on + strand, within Xcc-8004.1879.1 at 1812.285 kb on + strand, within Xcc-8004.1879.1 at 1812.285 kb on + strand, within Xcc-8004.1879.1 at 1812.285 kb on + strand, within Xcc-8004.1879.1 at 1812.285 kb on + strand, within Xcc-8004.1879.1 at 1812.285 kb on + strand, within Xcc-8004.1879.1 at 1812.285 kb on + strand, within Xcc-8004.1879.1 at 1812.286 kb on - strand, within Xcc-8004.1879.1 at 1812.286 kb on - strand, within Xcc-8004.1879.1 at 1812.286 kb on - strand, within Xcc-8004.1879.1 at 1812.286 kb on - strand, within Xcc-8004.1879.1 at 1812.286 kb on - strand, within Xcc-8004.1879.1 at 1812.286 kb on - strand, within Xcc-8004.1879.1 at 1812.286 kb on - strand, within Xcc-8004.1879.1 at 1812.286 kb on - strand, within Xcc-8004.1879.1 at 1812.286 kb on - strand, within Xcc-8004.1879.1 at 1812.286 kb on - strand, within Xcc-8004.1879.1 at 1812.286 kb on - strand, within Xcc-8004.1879.1 at 1812.335 kb on - strand, within Xcc-8004.1879.1 at 1812.576 kb on + strand, within Xcc-8004.1879.1 at 1812.577 kb on - strand, within Xcc-8004.1879.1 at 1812.648 kb on - strand, within Xcc-8004.1879.1 at 1812.648 kb on - strand, within Xcc-8004.1879.1 at 1812.666 kb on + strand, within Xcc-8004.1879.1 at 1812.667 kb on - strand, within Xcc-8004.1879.1 at 1812.667 kb on - strand, within Xcc-8004.1879.1 at 1812.732 kb on + strand at 1812.732 kb on + strand at 1812.732 kb on + strand at 1812.732 kb on + strand at 1812.732 kb on + strand at 1812.732 kb on + strand at 1812.732 kb on + strand at 1812.732 kb on + strand at 1812.732 kb on + strand at 1812.733 kb on - strand at 1812.733 kb on - strand at 1812.733 kb on - strand at 1812.733 kb on - strand at 1812.733 kb on - strand at 1812.733 kb on - strand at 1812.818 kb on + strand at 1812.854 kb on + strand at 1812.854 kb on + strand at 1812.854 kb on + strand at 1812.854 kb on + strand at 1812.854 kb on + strand at 1812.854 kb on + strand at 1812.855 kb on - strand at 1812.858 kb on + strand at 1812.858 kb on + strand at 1812.858 kb on + strand at 1812.858 kb on + strand at 1812.858 kb on + strand at 1812.858 kb on + strand at 1812.858 kb on + strand at 1812.858 kb on + strand at 1812.858 kb on + strand at 1812.859 kb on - strand at 1812.859 kb on - strand at 1812.859 kb on - strand at 1812.859 kb on - strand at 1813.144 kb on - strand, within Xcc-8004.1880.1 at 1813.327 kb on - strand, within Xcc-8004.1880.1 at 1813.392 kb on + strand, within Xcc-8004.1880.1 at 1813.392 kb on + strand, within Xcc-8004.1880.1 at 1813.392 kb on + strand, within Xcc-8004.1880.1 at 1813.393 kb on - strand, within Xcc-8004.1880.1 at 1813.509 kb on + strand, within Xcc-8004.1880.1 at 1813.509 kb on + strand, within Xcc-8004.1880.1 at 1813.509 kb on + strand, within Xcc-8004.1880.1 at 1813.509 kb on + strand, within Xcc-8004.1880.1 at 1813.509 kb on + strand, within Xcc-8004.1880.1 at 1813.509 kb on + strand, within Xcc-8004.1880.1 at 1813.510 kb on - strand, within Xcc-8004.1880.1 at 1813.510 kb on - strand, within Xcc-8004.1880.1 at 1813.510 kb on - strand, within Xcc-8004.1880.1 at 1813.510 kb on - strand, within Xcc-8004.1880.1 at 1813.510 kb on - strand, within Xcc-8004.1880.1 at 1813.510 kb on - strand, within Xcc-8004.1880.1 at 1813.510 kb on - strand, within Xcc-8004.1880.1 at 1813.542 kb on + strand, within Xcc-8004.1880.1 at 1813.542 kb on + strand, within Xcc-8004.1880.1 at 1813.542 kb on + strand, within Xcc-8004.1880.1 at 1813.542 kb on + strand, within Xcc-8004.1880.1 at 1813.543 kb on - strand, within Xcc-8004.1880.1 at 1813.543 kb on - strand, within Xcc-8004.1880.1 at 1813.543 kb on - strand, within Xcc-8004.1880.1 at 1813.572 kb on + strand, within Xcc-8004.1880.1 at 1813.572 kb on + strand, within Xcc-8004.1880.1 at 1813.572 kb on + strand, within Xcc-8004.1880.1 at 1813.572 kb on + strand, within Xcc-8004.1880.1 at 1813.572 kb on + strand, within Xcc-8004.1880.1 at 1813.896 kb on + strand, within Xcc-8004.1880.1 at 1813.897 kb on - strand, within Xcc-8004.1880.1 at 1813.897 kb on - strand, within Xcc-8004.1880.1 at 1814.028 kb on + strand, within Xcc-8004.1880.1 at 1814.028 kb on + strand, within Xcc-8004.1880.1 at 1814.029 kb on - strand, within Xcc-8004.1880.1 at 1814.029 kb on - strand, within Xcc-8004.1880.1 at 1814.029 kb on - strand, within Xcc-8004.1880.1 at 1814.029 kb on - strand, within Xcc-8004.1880.1 at 1814.199 kb on + strand at 1814.199 kb on + strand at 1814.199 kb on + strand at 1814.200 kb on - strand at 1814.200 kb on - strand at 1814.200 kb on - strand at 1814.200 kb on - strand at 1814.295 kb on + strand at 1814.295 kb on + strand at 1814.302 kb on - strand at 1814.310 kb on + strand at 1814.310 kb on + strand at 1814.310 kb on + strand at 1814.310 kb on + strand at 1814.310 kb on + strand at 1814.310 kb on + strand at 1814.311 kb on - strand at 1814.311 kb on - strand at 1814.311 kb on - strand at 1814.311 kb on - strand at 1814.311 kb on - strand at 1814.311 kb on - strand at 1814.311 kb on - strand at 1814.311 kb on - strand at 1814.311 kb on - strand at 1814.345 kb on + strand at 1814.365 kb on + strand at 1814.365 kb on + strand at 1814.365 kb on + strand at 1814.365 kb on + strand at 1814.366 kb on - strand at 1814.366 kb on - strand at 1814.366 kb on - strand at 1814.366 kb on - strand at 1814.366 kb on - strand at 1814.366 kb on - strand at 1814.402 kb on + strand at 1814.403 kb on - strand at 1814.446 kb on + strand at 1814.704 kb on + strand at 1814.704 kb on + strand at 1814.704 kb on + strand at 1814.704 kb on + strand at 1814.704 kb on + strand at 1814.704 kb on + strand at 1814.704 kb on + strand at 1814.704 kb on + strand at 1814.704 kb on + strand at 1814.705 kb on - strand at 1814.705 kb on - strand at 1814.705 kb on - strand at 1814.705 kb on - strand at 1814.705 kb on - strand at 1814.887 kb on - strand, within Xcc-8004.1881.1 at 1815.055 kb on + strand, within Xcc-8004.1881.1 at 1815.056 kb on - strand, within Xcc-8004.1881.1
Per-strain Table
Position Strand Gene LocusTag Fraction Citric Acid 10mM (C) remove 1,811,802 + Xcc-8004.1878.1 0.68 -2.9 1,811,802 + Xcc-8004.1878.1 0.68 +1.2 1,811,802 + Xcc-8004.1878.1 0.68 +2.0 1,811,803 - Xcc-8004.1878.1 0.68 +0.5 1,811,803 - Xcc-8004.1878.1 0.68 -2.1 1,811,803 - Xcc-8004.1878.1 0.68 -1.0 1,811,803 - Xcc-8004.1878.1 0.68 -0.2 1,811,951 + Xcc-8004.1878.1 0.88 -1.0 1,811,951 + Xcc-8004.1878.1 0.88 +0.4 1,811,951 + Xcc-8004.1878.1 0.88 +0.8 1,811,951 + Xcc-8004.1878.1 0.88 +0.9 1,811,951 + Xcc-8004.1878.1 0.88 -2.1 1,811,951 + Xcc-8004.1878.1 0.88 +2.8 1,811,952 - Xcc-8004.1878.1 0.88 -0.1 1,811,952 - Xcc-8004.1878.1 0.88 -1.7 1,811,952 - Xcc-8004.1878.1 0.88 +1.4 1,811,952 - Xcc-8004.1878.1 0.88 +1.2 1,812,033 + +0.3 1,812,034 - +0.8 1,812,034 - -1.8 1,812,085 + +1.5 1,812,085 + -2.8 1,812,085 + +1.3 1,812,086 - -1.0 1,812,086 - -2.3 1,812,086 - +0.4 1,812,086 - -0.5 1,812,086 - -0.5 1,812,150 + -0.2 1,812,150 + +1.1 1,812,150 + +0.2 1,812,150 + -0.5 1,812,150 + +0.7 1,812,150 + +1.3 1,812,150 + +0.5 1,812,150 + +0.7 1,812,151 - -1.1 1,812,151 - +0.2 1,812,151 - +1.8 1,812,151 - -2.8 1,812,151 - -2.6 1,812,151 - -2.5 1,812,151 - +1.8 1,812,151 - -3.4 1,812,151 - -1.6 1,812,151 - -1.9 1,812,168 + +2.4 1,812,169 - +0.9 1,812,169 - -1.1 1,812,169 - -0.8 1,812,169 - -0.6 1,812,285 + Xcc-8004.1879.1 0.21 -0.0 1,812,285 + Xcc-8004.1879.1 0.21 -0.2 1,812,285 + Xcc-8004.1879.1 0.21 -1.6 1,812,285 + Xcc-8004.1879.1 0.21 -0.3 1,812,285 + Xcc-8004.1879.1 0.21 -2.2 1,812,285 + Xcc-8004.1879.1 0.21 +1.0 1,812,285 + Xcc-8004.1879.1 0.21 -0.8 1,812,286 - Xcc-8004.1879.1 0.22 -1.0 1,812,286 - Xcc-8004.1879.1 0.22 -0.8 1,812,286 - Xcc-8004.1879.1 0.22 -1.4 1,812,286 - Xcc-8004.1879.1 0.22 -1.1 1,812,286 - Xcc-8004.1879.1 0.22 -1.5 1,812,286 - Xcc-8004.1879.1 0.22 -1.5 1,812,286 - Xcc-8004.1879.1 0.22 -1.2 1,812,286 - Xcc-8004.1879.1 0.22 -0.7 1,812,286 - Xcc-8004.1879.1 0.22 +0.7 1,812,286 - Xcc-8004.1879.1 0.22 +0.5 1,812,286 - Xcc-8004.1879.1 0.22 +0.6 1,812,335 - Xcc-8004.1879.1 0.30 -1.4 1,812,576 + Xcc-8004.1879.1 0.72 -0.5 1,812,577 - Xcc-8004.1879.1 0.72 +0.8 1,812,648 - Xcc-8004.1879.1 0.85 -1.5 1,812,648 - Xcc-8004.1879.1 0.85 -0.6 1,812,666 + Xcc-8004.1879.1 0.88 -2.5 1,812,667 - Xcc-8004.1879.1 0.88 -1.4 1,812,667 - Xcc-8004.1879.1 0.88 -0.6 1,812,732 + +0.9 1,812,732 + +1.3 1,812,732 + -0.0 1,812,732 + +0.2 1,812,732 + -1.8 1,812,732 + -1.3 1,812,732 + -0.2 1,812,732 + -0.3 1,812,732 + +1.6 1,812,733 - -1.2 1,812,733 - +0.2 1,812,733 - -0.9 1,812,733 - +0.8 1,812,733 - +1.8 1,812,733 - -1.2 1,812,818 + -1.5 1,812,854 + -0.8 1,812,854 + -1.9 1,812,854 + -0.8 1,812,854 + -2.6 1,812,854 + +0.2 1,812,854 + -2.4 1,812,855 - +0.8 1,812,858 + -0.8 1,812,858 + -1.4 1,812,858 + -0.2 1,812,858 + -2.2 1,812,858 + -1.4 1,812,858 + -3.2 1,812,858 + -1.4 1,812,858 + -0.4 1,812,858 + +1.8 1,812,859 - -1.8 1,812,859 - -0.0 1,812,859 - -1.7 1,812,859 - +0.4 1,813,144 - Xcc-8004.1880.1 0.27 +1.5 1,813,327 - Xcc-8004.1880.1 0.39 -0.9 1,813,392 + Xcc-8004.1880.1 0.44 -0.2 1,813,392 + Xcc-8004.1880.1 0.44 -1.8 1,813,392 + Xcc-8004.1880.1 0.44 -2.3 1,813,393 - Xcc-8004.1880.1 0.44 -2.0 1,813,509 + Xcc-8004.1880.1 0.52 -0.3 1,813,509 + Xcc-8004.1880.1 0.52 +0.2 1,813,509 + Xcc-8004.1880.1 0.52 -0.5 1,813,509 + Xcc-8004.1880.1 0.52 -2.2 1,813,509 + Xcc-8004.1880.1 0.52 -0.4 1,813,509 + Xcc-8004.1880.1 0.52 -2.5 1,813,510 - Xcc-8004.1880.1 0.52 +1.8 1,813,510 - Xcc-8004.1880.1 0.52 -1.6 1,813,510 - Xcc-8004.1880.1 0.52 +0.8 1,813,510 - Xcc-8004.1880.1 0.52 +0.8 1,813,510 - Xcc-8004.1880.1 0.52 -0.4 1,813,510 - Xcc-8004.1880.1 0.52 -1.2 1,813,510 - Xcc-8004.1880.1 0.52 +0.9 1,813,542 + Xcc-8004.1880.1 0.54 -2.5 1,813,542 + Xcc-8004.1880.1 0.54 -2.3 1,813,542 + Xcc-8004.1880.1 0.54 -1.4 1,813,542 + Xcc-8004.1880.1 0.54 -1.8 1,813,543 - Xcc-8004.1880.1 0.54 -1.3 1,813,543 - Xcc-8004.1880.1 0.54 -0.3 1,813,543 - Xcc-8004.1880.1 0.54 -0.0 1,813,572 + Xcc-8004.1880.1 0.56 -0.4 1,813,572 + Xcc-8004.1880.1 0.56 -0.5 1,813,572 + Xcc-8004.1880.1 0.56 +1.1 1,813,572 + Xcc-8004.1880.1 0.56 -0.8 1,813,572 + Xcc-8004.1880.1 0.56 -1.8 1,813,896 + Xcc-8004.1880.1 0.77 +0.3 1,813,897 - Xcc-8004.1880.1 0.77 -0.6 1,813,897 - Xcc-8004.1880.1 0.77 -1.9 1,814,028 + Xcc-8004.1880.1 0.86 -2.7 1,814,028 + Xcc-8004.1880.1 0.86 -1.4 1,814,029 - Xcc-8004.1880.1 0.86 -1.1 1,814,029 - Xcc-8004.1880.1 0.86 +0.3 1,814,029 - Xcc-8004.1880.1 0.86 +0.8 1,814,029 - Xcc-8004.1880.1 0.86 +1.8 1,814,199 + -1.9 1,814,199 + -2.6 1,814,199 + -1.0 1,814,200 - +0.5 1,814,200 - -1.4 1,814,200 - -1.1 1,814,200 - +1.4 1,814,295 + +0.8 1,814,295 + -1.5 1,814,302 - -1.2 1,814,310 + -1.2 1,814,310 + +0.6 1,814,310 + -2.0 1,814,310 + +1.3 1,814,310 + -0.4 1,814,310 + +1.2 1,814,311 - -1.3 1,814,311 - -1.0 1,814,311 - +1.1 1,814,311 - +1.2 1,814,311 - -0.0 1,814,311 - +0.8 1,814,311 - -0.2 1,814,311 - -1.2 1,814,311 - +0.6 1,814,345 + -2.6 1,814,365 + -1.4 1,814,365 + +0.4 1,814,365 + +1.8 1,814,365 + -0.5 1,814,366 - +0.2 1,814,366 - -0.2 1,814,366 - +2.2 1,814,366 - -0.2 1,814,366 - -0.4 1,814,366 - +0.4 1,814,402 + -0.9 1,814,403 - -0.3 1,814,446 + +0.8 1,814,704 + +0.5 1,814,704 + -0.8 1,814,704 + +0.3 1,814,704 + +0.7 1,814,704 + -0.6 1,814,704 + -0.5 1,814,704 + -0.1 1,814,704 + -1.8 1,814,704 + -1.6 1,814,705 - +0.1 1,814,705 - -1.0 1,814,705 - +1.1 1,814,705 - -0.5 1,814,705 - -1.2 1,814,887 - Xcc-8004.1881.1 0.12 +0.2 1,815,055 + Xcc-8004.1881.1 0.17 +0.9 1,815,056 - Xcc-8004.1881.1 0.17 -0.0
Or see this region's nucleotide sequence