Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1267.1

Experiment: Citric Acid 10mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1265.1 and Xcc-8004.1266.1 overlap by 4 nucleotidesXcc-8004.1266.1 and Xcc-8004.1267.1 are separated by 2 nucleotidesXcc-8004.1267.1 and Xcc-8004.1268.1 are separated by 412 nucleotides Xcc-8004.1265.1: Xcc-8004.1265.1 - sodium/alanine symporter family protein, at 1,203,841 to 1,205,334 Xcc-8004.1265.1 Xcc-8004.1266.1: Xcc-8004.1266.1 - hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-], at 1,205,331 to 1,206,233 Xcc-8004.1266.1 Xcc-8004.1267.1: Xcc-8004.1267.1 - Carboxylesterase, type B, at 1,206,236 to 1,207,744 Xcc-8004.1267.1 Xcc-8004.1268.1: Xcc-8004.1268.1 - Maltodextrin glucosidase (EC 3.2.1.20), at 1,208,157 to 1,210,121 Xcc-8004.1268.1 Position (kb) 1206 1207 1208Strain fitness (log2 ratio) -2 -1 0 1 2at 1205.246 kb on - strandat 1205.515 kb on - strand, within Xcc-8004.1266.1at 1205.515 kb on - strand, within Xcc-8004.1266.1at 1205.515 kb on - strand, within Xcc-8004.1266.1at 1205.574 kb on + strand, within Xcc-8004.1266.1at 1205.575 kb on - strand, within Xcc-8004.1266.1at 1206.133 kb on + strand, within Xcc-8004.1266.1at 1206.231 kb on + strandat 1206.231 kb on + strandat 1206.232 kb on - strandat 1206.557 kb on + strand, within Xcc-8004.1267.1at 1206.557 kb on + strand, within Xcc-8004.1267.1at 1206.557 kb on + strand, within Xcc-8004.1267.1at 1206.557 kb on + strand, within Xcc-8004.1267.1at 1206.557 kb on + strand, within Xcc-8004.1267.1at 1206.557 kb on + strand, within Xcc-8004.1267.1at 1206.557 kb on + strand, within Xcc-8004.1267.1at 1206.558 kb on - strand, within Xcc-8004.1267.1at 1206.558 kb on - strand, within Xcc-8004.1267.1at 1206.558 kb on - strand, within Xcc-8004.1267.1at 1206.561 kb on + strand, within Xcc-8004.1267.1at 1206.562 kb on - strand, within Xcc-8004.1267.1at 1207.245 kb on - strand, within Xcc-8004.1267.1at 1207.245 kb on - strand, within Xcc-8004.1267.1at 1207.265 kb on + strand, within Xcc-8004.1267.1at 1207.296 kb on + strand, within Xcc-8004.1267.1at 1207.296 kb on + strand, within Xcc-8004.1267.1at 1207.296 kb on + strand, within Xcc-8004.1267.1at 1207.297 kb on - strand, within Xcc-8004.1267.1at 1207.297 kb on - strand, within Xcc-8004.1267.1at 1207.475 kb on + strand, within Xcc-8004.1267.1at 1207.475 kb on + strand, within Xcc-8004.1267.1at 1207.475 kb on + strand, within Xcc-8004.1267.1at 1207.476 kb on - strand, within Xcc-8004.1267.1at 1207.476 kb on - strand, within Xcc-8004.1267.1at 1207.476 kb on - strand, within Xcc-8004.1267.1at 1207.476 kb on - strand, within Xcc-8004.1267.1at 1207.476 kb on - strand, within Xcc-8004.1267.1at 1207.516 kb on + strand, within Xcc-8004.1267.1at 1207.516 kb on + strand, within Xcc-8004.1267.1at 1207.517 kb on - strand, within Xcc-8004.1267.1at 1207.942 kb on + strandat 1207.968 kb on + strandat 1207.969 kb on - strandat 1207.969 kb on - strandat 1207.969 kb on - strandat 1207.969 kb on - strandat 1207.969 kb on - strandat 1207.976 kb on + strandat 1207.977 kb on - strandat 1208.211 kb on + strandat 1208.211 kb on + strandat 1208.212 kb on - strandat 1208.278 kb on + strandat 1208.279 kb on - strandat 1208.279 kb on - strandat 1208.279 kb on - strandat 1208.365 kb on + strand, within Xcc-8004.1268.1at 1208.365 kb on + strand, within Xcc-8004.1268.1at 1208.365 kb on + strand, within Xcc-8004.1268.1at 1208.366 kb on - strand, within Xcc-8004.1268.1at 1208.366 kb on - strand, within Xcc-8004.1268.1at 1208.530 kb on + strand, within Xcc-8004.1268.1at 1208.539 kb on + strand, within Xcc-8004.1268.1at 1208.539 kb on + strand, within Xcc-8004.1268.1at 1208.539 kb on + strand, within Xcc-8004.1268.1at 1208.539 kb on + strand, within Xcc-8004.1268.1at 1208.539 kb on + strand, within Xcc-8004.1268.1at 1208.539 kb on + strand, within Xcc-8004.1268.1at 1208.540 kb on - strand, within Xcc-8004.1268.1at 1208.540 kb on - strand, within Xcc-8004.1268.1at 1208.540 kb on - strand, within Xcc-8004.1268.1at 1208.540 kb on - strand, within Xcc-8004.1268.1at 1208.540 kb on - strand, within Xcc-8004.1268.1at 1208.638 kb on + strand, within Xcc-8004.1268.1at 1208.638 kb on + strand, within Xcc-8004.1268.1at 1208.639 kb on - strand, within Xcc-8004.1268.1at 1208.639 kb on - strand, within Xcc-8004.1268.1at 1208.639 kb on - strand, within Xcc-8004.1268.1at 1208.639 kb on - strand, within Xcc-8004.1268.1at 1208.639 kb on - strand, within Xcc-8004.1268.1at 1208.639 kb on - strand, within Xcc-8004.1268.1at 1208.639 kb on - strand, within Xcc-8004.1268.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid 10mM (C)
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1,205,246 - -1.5
1,205,515 - Xcc-8004.1266.1 0.20 +1.6
1,205,515 - Xcc-8004.1266.1 0.20 -0.2
1,205,515 - Xcc-8004.1266.1 0.20 -1.8
1,205,574 + Xcc-8004.1266.1 0.27 +0.2
1,205,575 - Xcc-8004.1266.1 0.27 -1.9
1,206,133 + Xcc-8004.1266.1 0.89 -2.6
1,206,231 + +1.4
1,206,231 + -0.3
1,206,232 - -2.5
1,206,557 + Xcc-8004.1267.1 0.21 -1.5
1,206,557 + Xcc-8004.1267.1 0.21 +0.3
1,206,557 + Xcc-8004.1267.1 0.21 +0.8
1,206,557 + Xcc-8004.1267.1 0.21 -1.2
1,206,557 + Xcc-8004.1267.1 0.21 -0.4
1,206,557 + Xcc-8004.1267.1 0.21 -1.0
1,206,557 + Xcc-8004.1267.1 0.21 -0.0
1,206,558 - Xcc-8004.1267.1 0.21 +1.1
1,206,558 - Xcc-8004.1267.1 0.21 +0.5
1,206,558 - Xcc-8004.1267.1 0.21 -0.8
1,206,561 + Xcc-8004.1267.1 0.22 -1.0
1,206,562 - Xcc-8004.1267.1 0.22 +1.3
1,207,245 - Xcc-8004.1267.1 0.67 +1.0
1,207,245 - Xcc-8004.1267.1 0.67 -0.7
1,207,265 + Xcc-8004.1267.1 0.68 +0.5
1,207,296 + Xcc-8004.1267.1 0.70 +0.4
1,207,296 + Xcc-8004.1267.1 0.70 +1.8
1,207,296 + Xcc-8004.1267.1 0.70 +1.0
1,207,297 - Xcc-8004.1267.1 0.70 -0.1
1,207,297 - Xcc-8004.1267.1 0.70 +0.1
1,207,475 + Xcc-8004.1267.1 0.82 -1.4
1,207,475 + Xcc-8004.1267.1 0.82 +0.8
1,207,475 + Xcc-8004.1267.1 0.82 -0.2
1,207,476 - Xcc-8004.1267.1 0.82 -0.1
1,207,476 - Xcc-8004.1267.1 0.82 -0.1
1,207,476 - Xcc-8004.1267.1 0.82 +0.3
1,207,476 - Xcc-8004.1267.1 0.82 -2.0
1,207,476 - Xcc-8004.1267.1 0.82 -1.8
1,207,516 + Xcc-8004.1267.1 0.85 -0.2
1,207,516 + Xcc-8004.1267.1 0.85 +1.1
1,207,517 - Xcc-8004.1267.1 0.85 +0.3
1,207,942 + -1.7
1,207,968 + -0.9
1,207,969 - -1.0
1,207,969 - -0.3
1,207,969 - -0.8
1,207,969 - +2.4
1,207,969 - +0.1
1,207,976 + +0.6
1,207,977 - -2.6
1,208,211 + -0.4
1,208,211 + +0.9
1,208,212 - -0.3
1,208,278 + -0.2
1,208,279 - -0.8
1,208,279 - -1.3
1,208,279 - -1.8
1,208,365 + Xcc-8004.1268.1 0.11 -0.2
1,208,365 + Xcc-8004.1268.1 0.11 +0.6
1,208,365 + Xcc-8004.1268.1 0.11 -1.0
1,208,366 - Xcc-8004.1268.1 0.11 +0.9
1,208,366 - Xcc-8004.1268.1 0.11 -0.6
1,208,530 + Xcc-8004.1268.1 0.19 +0.8
1,208,539 + Xcc-8004.1268.1 0.19 -0.3
1,208,539 + Xcc-8004.1268.1 0.19 -0.1
1,208,539 + Xcc-8004.1268.1 0.19 -0.5
1,208,539 + Xcc-8004.1268.1 0.19 -0.4
1,208,539 + Xcc-8004.1268.1 0.19 +0.8
1,208,539 + Xcc-8004.1268.1 0.19 -2.3
1,208,540 - Xcc-8004.1268.1 0.19 +1.2
1,208,540 - Xcc-8004.1268.1 0.19 +1.1
1,208,540 - Xcc-8004.1268.1 0.19 +1.6
1,208,540 - Xcc-8004.1268.1 0.19 -0.7
1,208,540 - Xcc-8004.1268.1 0.19 +1.4
1,208,638 + Xcc-8004.1268.1 0.24 -1.1
1,208,638 + Xcc-8004.1268.1 0.24 +0.0
1,208,639 - Xcc-8004.1268.1 0.25 -1.2
1,208,639 - Xcc-8004.1268.1 0.25 -0.5
1,208,639 - Xcc-8004.1268.1 0.25 +0.1
1,208,639 - Xcc-8004.1268.1 0.25 +0.2
1,208,639 - Xcc-8004.1268.1 0.25 -0.0
1,208,639 - Xcc-8004.1268.1 0.25 +0.4
1,208,639 - Xcc-8004.1268.1 0.25 +0.1

Or see this region's nucleotide sequence