Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1265.1

Experiment: Citric Acid 10mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1263.1 and Xcc-8004.1264.1 are separated by 15 nucleotidesXcc-8004.1264.1 and Xcc-8004.1265.1 are separated by 100 nucleotidesXcc-8004.1265.1 and Xcc-8004.1266.1 overlap by 4 nucleotidesXcc-8004.1266.1 and Xcc-8004.1267.1 are separated by 2 nucleotides Xcc-8004.1263.1: Xcc-8004.1263.1 - hypothetical protein, at 1,200,471 to 1,203,146 Xcc-8004.1263.1 Xcc-8004.1264.1: Xcc-8004.1264.1 - N-acetylglutamate synthase (EC 2.3.1.1), at 1,203,162 to 1,203,740 Xcc-8004.1264.1 Xcc-8004.1265.1: Xcc-8004.1265.1 - sodium/alanine symporter family protein, at 1,203,841 to 1,205,334 Xcc-8004.1265.1 Xcc-8004.1266.1: Xcc-8004.1266.1 - hypothetical tRNA/rRNA methyltransferase yfiF [EC:2.1.1.-], at 1,205,331 to 1,206,233 Xcc-8004.1266.1 Xcc-8004.1267.1: Xcc-8004.1267.1 - Carboxylesterase, type B, at 1,206,236 to 1,207,744 Xcc-8004.1267.1 Position (kb) 1203 1204 1205 1206Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1202.879 kb on + strandat 1202.879 kb on + strandat 1202.879 kb on + strandat 1202.879 kb on + strandat 1202.879 kb on + strandat 1202.880 kb on - strandat 1202.880 kb on - strandat 1202.880 kb on - strandat 1202.883 kb on + strandat 1202.883 kb on + strandat 1202.883 kb on + strandat 1202.883 kb on + strandat 1202.884 kb on - strandat 1202.884 kb on - strandat 1202.884 kb on - strandat 1202.884 kb on - strandat 1202.884 kb on - strandat 1202.884 kb on - strandat 1202.884 kb on - strandat 1203.342 kb on + strand, within Xcc-8004.1264.1at 1203.344 kb on + strand, within Xcc-8004.1264.1at 1203.549 kb on + strand, within Xcc-8004.1264.1at 1203.631 kb on + strand, within Xcc-8004.1264.1at 1203.631 kb on + strand, within Xcc-8004.1264.1at 1203.631 kb on + strand, within Xcc-8004.1264.1at 1203.631 kb on + strand, within Xcc-8004.1264.1at 1203.919 kb on + strandat 1204.066 kb on - strand, within Xcc-8004.1265.1at 1204.066 kb on - strand, within Xcc-8004.1265.1at 1204.156 kb on + strand, within Xcc-8004.1265.1at 1204.156 kb on + strand, within Xcc-8004.1265.1at 1204.156 kb on + strand, within Xcc-8004.1265.1at 1204.157 kb on - strand, within Xcc-8004.1265.1at 1204.183 kb on + strand, within Xcc-8004.1265.1at 1204.184 kb on - strand, within Xcc-8004.1265.1at 1204.184 kb on - strand, within Xcc-8004.1265.1at 1204.228 kb on + strand, within Xcc-8004.1265.1at 1204.229 kb on - strand, within Xcc-8004.1265.1at 1204.231 kb on + strand, within Xcc-8004.1265.1at 1204.232 kb on - strand, within Xcc-8004.1265.1at 1204.232 kb on - strand, within Xcc-8004.1265.1at 1204.232 kb on - strand, within Xcc-8004.1265.1at 1204.232 kb on - strand, within Xcc-8004.1265.1at 1204.232 kb on - strand, within Xcc-8004.1265.1at 1204.262 kb on - strand, within Xcc-8004.1265.1at 1204.537 kb on + strand, within Xcc-8004.1265.1at 1204.537 kb on + strand, within Xcc-8004.1265.1at 1204.537 kb on + strand, within Xcc-8004.1265.1at 1204.687 kb on + strand, within Xcc-8004.1265.1at 1204.765 kb on + strand, within Xcc-8004.1265.1at 1204.769 kb on + strand, within Xcc-8004.1265.1at 1204.769 kb on + strand, within Xcc-8004.1265.1at 1204.769 kb on + strand, within Xcc-8004.1265.1at 1204.769 kb on + strand, within Xcc-8004.1265.1at 1204.787 kb on - strand, within Xcc-8004.1265.1at 1204.846 kb on + strand, within Xcc-8004.1265.1at 1204.846 kb on + strand, within Xcc-8004.1265.1at 1204.847 kb on - strand, within Xcc-8004.1265.1at 1204.847 kb on - strand, within Xcc-8004.1265.1at 1204.855 kb on + strand, within Xcc-8004.1265.1at 1204.856 kb on - strand, within Xcc-8004.1265.1at 1204.856 kb on - strand, within Xcc-8004.1265.1at 1204.885 kb on + strand, within Xcc-8004.1265.1at 1204.886 kb on - strand, within Xcc-8004.1265.1at 1205.017 kb on + strand, within Xcc-8004.1265.1at 1205.020 kb on + strand, within Xcc-8004.1265.1at 1205.020 kb on + strand, within Xcc-8004.1265.1at 1205.021 kb on - strand, within Xcc-8004.1265.1at 1205.023 kb on + strand, within Xcc-8004.1265.1at 1205.023 kb on + strand, within Xcc-8004.1265.1at 1205.023 kb on + strand, within Xcc-8004.1265.1at 1205.023 kb on + strand, within Xcc-8004.1265.1at 1205.023 kb on + strand, within Xcc-8004.1265.1at 1205.023 kb on + strand, within Xcc-8004.1265.1at 1205.023 kb on + strand, within Xcc-8004.1265.1at 1205.023 kb on + strand, within Xcc-8004.1265.1at 1205.023 kb on + strand, within Xcc-8004.1265.1at 1205.023 kb on + strand, within Xcc-8004.1265.1at 1205.024 kb on - strand, within Xcc-8004.1265.1at 1205.047 kb on + strand, within Xcc-8004.1265.1at 1205.047 kb on + strand, within Xcc-8004.1265.1at 1205.048 kb on - strand, within Xcc-8004.1265.1at 1205.133 kb on + strand, within Xcc-8004.1265.1at 1205.246 kb on - strandat 1205.515 kb on - strand, within Xcc-8004.1266.1at 1205.515 kb on - strand, within Xcc-8004.1266.1at 1205.515 kb on - strand, within Xcc-8004.1266.1at 1205.574 kb on + strand, within Xcc-8004.1266.1at 1205.575 kb on - strand, within Xcc-8004.1266.1at 1206.133 kb on + strand, within Xcc-8004.1266.1at 1206.231 kb on + strandat 1206.231 kb on + strandat 1206.232 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid 10mM (C)
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1,202,879 + -1.6
1,202,879 + +0.7
1,202,879 + -2.3
1,202,879 + +0.8
1,202,879 + -0.7
1,202,880 - -0.5
1,202,880 - +1.4
1,202,880 - +0.8
1,202,883 + -1.0
1,202,883 + +0.5
1,202,883 + -0.7
1,202,883 + +1.1
1,202,884 - -1.0
1,202,884 - -0.5
1,202,884 - -2.3
1,202,884 - -1.5
1,202,884 - -0.3
1,202,884 - -0.5
1,202,884 - +0.1
1,203,342 + Xcc-8004.1264.1 0.31 -2.2
1,203,344 + Xcc-8004.1264.1 0.31 -0.8
1,203,549 + Xcc-8004.1264.1 0.67 -2.0
1,203,631 + Xcc-8004.1264.1 0.81 -1.1
1,203,631 + Xcc-8004.1264.1 0.81 +0.2
1,203,631 + Xcc-8004.1264.1 0.81 +0.5
1,203,631 + Xcc-8004.1264.1 0.81 +0.6
1,203,919 + -0.3
1,204,066 - Xcc-8004.1265.1 0.15 -0.8
1,204,066 - Xcc-8004.1265.1 0.15 +0.2
1,204,156 + Xcc-8004.1265.1 0.21 -1.2
1,204,156 + Xcc-8004.1265.1 0.21 +0.8
1,204,156 + Xcc-8004.1265.1 0.21 +0.1
1,204,157 - Xcc-8004.1265.1 0.21 -0.2
1,204,183 + Xcc-8004.1265.1 0.23 -0.6
1,204,184 - Xcc-8004.1265.1 0.23 -1.3
1,204,184 - Xcc-8004.1265.1 0.23 +0.4
1,204,228 + Xcc-8004.1265.1 0.26 -1.0
1,204,229 - Xcc-8004.1265.1 0.26 +0.8
1,204,231 + Xcc-8004.1265.1 0.26 +0.7
1,204,232 - Xcc-8004.1265.1 0.26 +0.8
1,204,232 - Xcc-8004.1265.1 0.26 -0.5
1,204,232 - Xcc-8004.1265.1 0.26 +0.0
1,204,232 - Xcc-8004.1265.1 0.26 +0.2
1,204,232 - Xcc-8004.1265.1 0.26 +3.8
1,204,262 - Xcc-8004.1265.1 0.28 +0.9
1,204,537 + Xcc-8004.1265.1 0.47 -0.2
1,204,537 + Xcc-8004.1265.1 0.47 -1.5
1,204,537 + Xcc-8004.1265.1 0.47 -1.1
1,204,687 + Xcc-8004.1265.1 0.57 -1.5
1,204,765 + Xcc-8004.1265.1 0.62 +0.6
1,204,769 + Xcc-8004.1265.1 0.62 -1.0
1,204,769 + Xcc-8004.1265.1 0.62 +1.0
1,204,769 + Xcc-8004.1265.1 0.62 -0.5
1,204,769 + Xcc-8004.1265.1 0.62 -0.5
1,204,787 - Xcc-8004.1265.1 0.63 -1.6
1,204,846 + Xcc-8004.1265.1 0.67 +1.4
1,204,846 + Xcc-8004.1265.1 0.67 +1.4
1,204,847 - Xcc-8004.1265.1 0.67 -0.2
1,204,847 - Xcc-8004.1265.1 0.67 +0.8
1,204,855 + Xcc-8004.1265.1 0.68 -1.0
1,204,856 - Xcc-8004.1265.1 0.68 -1.7
1,204,856 - Xcc-8004.1265.1 0.68 +0.6
1,204,885 + Xcc-8004.1265.1 0.70 +1.4
1,204,886 - Xcc-8004.1265.1 0.70 +0.4
1,205,017 + Xcc-8004.1265.1 0.79 -0.5
1,205,020 + Xcc-8004.1265.1 0.79 -1.4
1,205,020 + Xcc-8004.1265.1 0.79 +0.8
1,205,021 - Xcc-8004.1265.1 0.79 -1.0
1,205,023 + Xcc-8004.1265.1 0.79 -0.7
1,205,023 + Xcc-8004.1265.1 0.79 -0.1
1,205,023 + Xcc-8004.1265.1 0.79 -0.8
1,205,023 + Xcc-8004.1265.1 0.79 -0.5
1,205,023 + Xcc-8004.1265.1 0.79 -0.5
1,205,023 + Xcc-8004.1265.1 0.79 -1.1
1,205,023 + Xcc-8004.1265.1 0.79 +1.8
1,205,023 + Xcc-8004.1265.1 0.79 +0.2
1,205,023 + Xcc-8004.1265.1 0.79 -1.4
1,205,023 + Xcc-8004.1265.1 0.79 +0.0
1,205,024 - Xcc-8004.1265.1 0.79 -0.4
1,205,047 + Xcc-8004.1265.1 0.81 -2.2
1,205,047 + Xcc-8004.1265.1 0.81 +3.0
1,205,048 - Xcc-8004.1265.1 0.81 +1.0
1,205,133 + Xcc-8004.1265.1 0.86 +1.8
1,205,246 - -1.5
1,205,515 - Xcc-8004.1266.1 0.20 +1.6
1,205,515 - Xcc-8004.1266.1 0.20 -0.2
1,205,515 - Xcc-8004.1266.1 0.20 -1.8
1,205,574 + Xcc-8004.1266.1 0.27 +0.2
1,205,575 - Xcc-8004.1266.1 0.27 -1.9
1,206,133 + Xcc-8004.1266.1 0.89 -2.6
1,206,231 + +1.4
1,206,231 + -0.3
1,206,232 - -2.5

Or see this region's nucleotide sequence