Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1129.1

Experiment: Citric Acid 10mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.1128.1 and Xcc-8004.1129.1 are separated by 308 nucleotidesXcc-8004.1129.1 and Xcc-8004.1130.1 overlap by 133 nucleotides Xcc-8004.1128.1: Xcc-8004.1128.1 - Glutamate-1-semialdehyde aminotransferase (EC 5.4.3.8), at 1,075,166 to 1,076,455 Xcc-8004.1128.1 Xcc-8004.1129.1: Xcc-8004.1129.1 - Oar protein, at 1,076,764 to 1,078,581 Xcc-8004.1129.1 Xcc-8004.1130.1: Xcc-8004.1130.1 - Oar protein, at 1,078,449 to 1,079,936 Xcc-8004.1130.1 Position (kb) 1076 1077 1078 1079Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1076.549 kb on - strandat 1076.605 kb on + strandat 1076.605 kb on + strandat 1076.606 kb on - strandat 1076.606 kb on - strandat 1076.772 kb on + strandat 1076.773 kb on - strandat 1076.930 kb on + strandat 1076.947 kb on + strand, within Xcc-8004.1129.1at 1076.947 kb on + strand, within Xcc-8004.1129.1at 1076.977 kb on + strand, within Xcc-8004.1129.1at 1076.977 kb on + strand, within Xcc-8004.1129.1at 1076.977 kb on + strand, within Xcc-8004.1129.1at 1076.978 kb on - strand, within Xcc-8004.1129.1at 1076.978 kb on - strand, within Xcc-8004.1129.1at 1077.052 kb on - strand, within Xcc-8004.1129.1at 1077.325 kb on + strand, within Xcc-8004.1129.1at 1077.325 kb on + strand, within Xcc-8004.1129.1at 1077.325 kb on + strand, within Xcc-8004.1129.1at 1077.325 kb on + strand, within Xcc-8004.1129.1at 1077.328 kb on + strand, within Xcc-8004.1129.1at 1077.328 kb on + strand, within Xcc-8004.1129.1at 1077.328 kb on + strand, within Xcc-8004.1129.1at 1077.559 kb on + strand, within Xcc-8004.1129.1at 1077.559 kb on + strand, within Xcc-8004.1129.1at 1077.559 kb on + strand, within Xcc-8004.1129.1at 1077.559 kb on + strand, within Xcc-8004.1129.1at 1077.559 kb on + strand, within Xcc-8004.1129.1at 1077.559 kb on + strand, within Xcc-8004.1129.1at 1077.559 kb on + strand, within Xcc-8004.1129.1at 1077.559 kb on + strand, within Xcc-8004.1129.1at 1077.560 kb on - strand, within Xcc-8004.1129.1at 1077.560 kb on - strand, within Xcc-8004.1129.1at 1077.604 kb on + strand, within Xcc-8004.1129.1at 1077.635 kb on - strand, within Xcc-8004.1129.1at 1077.673 kb on + strand, within Xcc-8004.1129.1at 1077.674 kb on - strand, within Xcc-8004.1129.1at 1077.674 kb on - strand, within Xcc-8004.1129.1at 1077.674 kb on - strand, within Xcc-8004.1129.1at 1077.674 kb on - strand, within Xcc-8004.1129.1at 1077.682 kb on + strand, within Xcc-8004.1129.1at 1077.682 kb on + strand, within Xcc-8004.1129.1at 1077.682 kb on + strand, within Xcc-8004.1129.1at 1077.683 kb on - strand, within Xcc-8004.1129.1at 1077.811 kb on + strand, within Xcc-8004.1129.1at 1077.812 kb on - strand, within Xcc-8004.1129.1at 1077.818 kb on - strand, within Xcc-8004.1129.1at 1077.818 kb on - strand, within Xcc-8004.1129.1at 1077.818 kb on - strand, within Xcc-8004.1129.1at 1077.818 kb on - strand, within Xcc-8004.1129.1at 1077.818 kb on - strand, within Xcc-8004.1129.1at 1077.835 kb on + strand, within Xcc-8004.1129.1at 1077.922 kb on + strand, within Xcc-8004.1129.1at 1077.922 kb on + strand, within Xcc-8004.1129.1at 1077.922 kb on + strand, within Xcc-8004.1129.1at 1077.923 kb on - strand, within Xcc-8004.1129.1at 1077.923 kb on - strand, within Xcc-8004.1129.1at 1077.923 kb on - strand, within Xcc-8004.1129.1at 1077.928 kb on + strand, within Xcc-8004.1129.1at 1077.929 kb on - strand, within Xcc-8004.1129.1at 1077.934 kb on + strand, within Xcc-8004.1129.1at 1077.935 kb on - strand, within Xcc-8004.1129.1at 1077.935 kb on - strand, within Xcc-8004.1129.1at 1078.012 kb on + strand, within Xcc-8004.1129.1at 1078.012 kb on + strand, within Xcc-8004.1129.1at 1078.021 kb on + strand, within Xcc-8004.1129.1at 1078.055 kb on - strand, within Xcc-8004.1129.1at 1078.096 kb on + strand, within Xcc-8004.1129.1at 1078.097 kb on - strand, within Xcc-8004.1129.1at 1078.097 kb on - strand, within Xcc-8004.1129.1at 1078.351 kb on + strand, within Xcc-8004.1129.1at 1078.351 kb on + strand, within Xcc-8004.1129.1at 1078.351 kb on + strand, within Xcc-8004.1129.1at 1078.351 kb on + strand, within Xcc-8004.1129.1at 1078.352 kb on - strand, within Xcc-8004.1129.1at 1078.476 kb on + strandat 1078.479 kb on + strandat 1078.479 kb on + strandat 1078.479 kb on + strandat 1078.480 kb on - strandat 1078.480 kb on - strandat 1078.480 kb on - strandat 1078.480 kb on - strandat 1078.487 kb on - strandat 1078.509 kb on + strandat 1078.510 kb on - strandat 1078.536 kb on + strandat 1078.537 kb on - strandat 1078.539 kb on + strandat 1078.539 kb on + strandat 1078.614 kb on + strand, within Xcc-8004.1130.1at 1078.615 kb on - strand, within Xcc-8004.1130.1at 1078.615 kb on - strand, within Xcc-8004.1130.1at 1078.615 kb on - strand, within Xcc-8004.1130.1at 1078.615 kb on - strand, within Xcc-8004.1130.1at 1078.615 kb on - strand, within Xcc-8004.1130.1at 1078.636 kb on - strand, within Xcc-8004.1130.1at 1078.638 kb on - strand, within Xcc-8004.1130.1at 1078.735 kb on - strand, within Xcc-8004.1130.1at 1078.735 kb on - strand, within Xcc-8004.1130.1at 1078.735 kb on - strand, within Xcc-8004.1130.1at 1078.794 kb on + strand, within Xcc-8004.1130.1at 1078.795 kb on - strand, within Xcc-8004.1130.1at 1078.795 kb on - strand, within Xcc-8004.1130.1at 1078.795 kb on - strand, within Xcc-8004.1130.1at 1078.797 kb on + strand, within Xcc-8004.1130.1at 1078.797 kb on + strand, within Xcc-8004.1130.1at 1078.797 kb on + strand, within Xcc-8004.1130.1at 1078.798 kb on - strand, within Xcc-8004.1130.1at 1078.798 kb on - strand, within Xcc-8004.1130.1at 1078.798 kb on - strand, within Xcc-8004.1130.1at 1078.798 kb on - strand, within Xcc-8004.1130.1at 1078.798 kb on - strand, within Xcc-8004.1130.1at 1078.798 kb on - strand, within Xcc-8004.1130.1at 1078.798 kb on - strand, within Xcc-8004.1130.1at 1078.803 kb on + strand, within Xcc-8004.1130.1at 1078.803 kb on + strand, within Xcc-8004.1130.1at 1078.803 kb on + strand, within Xcc-8004.1130.1at 1078.804 kb on - strand, within Xcc-8004.1130.1at 1079.040 kb on + strand, within Xcc-8004.1130.1at 1079.041 kb on - strand, within Xcc-8004.1130.1at 1079.041 kb on - strand, within Xcc-8004.1130.1at 1079.041 kb on - strand, within Xcc-8004.1130.1at 1079.235 kb on + strand, within Xcc-8004.1130.1at 1079.235 kb on + strand, within Xcc-8004.1130.1at 1079.298 kb on + strand, within Xcc-8004.1130.1at 1079.298 kb on + strand, within Xcc-8004.1130.1at 1079.299 kb on - strand, within Xcc-8004.1130.1at 1079.299 kb on - strand, within Xcc-8004.1130.1at 1079.299 kb on - strand, within Xcc-8004.1130.1at 1079.299 kb on - strand, within Xcc-8004.1130.1at 1079.312 kb on + strand, within Xcc-8004.1130.1at 1079.312 kb on + strand, within Xcc-8004.1130.1at 1079.313 kb on - strand, within Xcc-8004.1130.1at 1079.316 kb on + strand, within Xcc-8004.1130.1at 1079.316 kb on + strand, within Xcc-8004.1130.1at 1079.316 kb on + strand, within Xcc-8004.1130.1at 1079.317 kb on - strand, within Xcc-8004.1130.1at 1079.496 kb on + strand, within Xcc-8004.1130.1at 1079.496 kb on + strand, within Xcc-8004.1130.1at 1079.497 kb on - strand, within Xcc-8004.1130.1at 1079.497 kb on - strand, within Xcc-8004.1130.1at 1079.497 kb on - strand, within Xcc-8004.1130.1at 1079.575 kb on - strand, within Xcc-8004.1130.1

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid 10mM (C)
remove
1,076,549 - -1.3
1,076,605 + -0.5
1,076,605 + -0.6
1,076,606 - +1.2
1,076,606 - -1.1
1,076,772 + +1.0
1,076,773 - -1.9
1,076,930 + +2.2
1,076,947 + Xcc-8004.1129.1 0.10 -0.2
1,076,947 + Xcc-8004.1129.1 0.10 +1.3
1,076,977 + Xcc-8004.1129.1 0.12 +0.0
1,076,977 + Xcc-8004.1129.1 0.12 +1.1
1,076,977 + Xcc-8004.1129.1 0.12 +1.6
1,076,978 - Xcc-8004.1129.1 0.12 +0.2
1,076,978 - Xcc-8004.1129.1 0.12 -1.2
1,077,052 - Xcc-8004.1129.1 0.16 -0.6
1,077,325 + Xcc-8004.1129.1 0.31 -0.2
1,077,325 + Xcc-8004.1129.1 0.31 -0.8
1,077,325 + Xcc-8004.1129.1 0.31 -0.2
1,077,325 + Xcc-8004.1129.1 0.31 +0.3
1,077,328 + Xcc-8004.1129.1 0.31 +0.5
1,077,328 + Xcc-8004.1129.1 0.31 -1.2
1,077,328 + Xcc-8004.1129.1 0.31 +3.8
1,077,559 + Xcc-8004.1129.1 0.44 +0.6
1,077,559 + Xcc-8004.1129.1 0.44 +0.7
1,077,559 + Xcc-8004.1129.1 0.44 -2.3
1,077,559 + Xcc-8004.1129.1 0.44 -2.8
1,077,559 + Xcc-8004.1129.1 0.44 -0.8
1,077,559 + Xcc-8004.1129.1 0.44 -0.7
1,077,559 + Xcc-8004.1129.1 0.44 -1.1
1,077,559 + Xcc-8004.1129.1 0.44 +0.3
1,077,560 - Xcc-8004.1129.1 0.44 -1.2
1,077,560 - Xcc-8004.1129.1 0.44 -0.2
1,077,604 + Xcc-8004.1129.1 0.46 +0.1
1,077,635 - Xcc-8004.1129.1 0.48 -0.9
1,077,673 + Xcc-8004.1129.1 0.50 +1.3
1,077,674 - Xcc-8004.1129.1 0.50 +1.6
1,077,674 - Xcc-8004.1129.1 0.50 -0.0
1,077,674 - Xcc-8004.1129.1 0.50 -0.2
1,077,674 - Xcc-8004.1129.1 0.50 +2.6
1,077,682 + Xcc-8004.1129.1 0.50 -1.5
1,077,682 + Xcc-8004.1129.1 0.50 -2.4
1,077,682 + Xcc-8004.1129.1 0.50 -0.7
1,077,683 - Xcc-8004.1129.1 0.51 -2.0
1,077,811 + Xcc-8004.1129.1 0.58 -1.7
1,077,812 - Xcc-8004.1129.1 0.58 -2.8
1,077,818 - Xcc-8004.1129.1 0.58 -0.1
1,077,818 - Xcc-8004.1129.1 0.58 +0.7
1,077,818 - Xcc-8004.1129.1 0.58 +1.5
1,077,818 - Xcc-8004.1129.1 0.58 +0.2
1,077,818 - Xcc-8004.1129.1 0.58 +0.4
1,077,835 + Xcc-8004.1129.1 0.59 -0.4
1,077,922 + Xcc-8004.1129.1 0.64 -0.4
1,077,922 + Xcc-8004.1129.1 0.64 -1.3
1,077,922 + Xcc-8004.1129.1 0.64 -0.3
1,077,923 - Xcc-8004.1129.1 0.64 +0.1
1,077,923 - Xcc-8004.1129.1 0.64 +0.2
1,077,923 - Xcc-8004.1129.1 0.64 +1.7
1,077,928 + Xcc-8004.1129.1 0.64 +0.8
1,077,929 - Xcc-8004.1129.1 0.64 -2.0
1,077,934 + Xcc-8004.1129.1 0.64 +0.5
1,077,935 - Xcc-8004.1129.1 0.64 -0.7
1,077,935 - Xcc-8004.1129.1 0.64 +0.6
1,078,012 + Xcc-8004.1129.1 0.69 -0.0
1,078,012 + Xcc-8004.1129.1 0.69 +1.1
1,078,021 + Xcc-8004.1129.1 0.69 -0.6
1,078,055 - Xcc-8004.1129.1 0.71 -1.9
1,078,096 + Xcc-8004.1129.1 0.73 -0.8
1,078,097 - Xcc-8004.1129.1 0.73 +0.1
1,078,097 - Xcc-8004.1129.1 0.73 +0.2
1,078,351 + Xcc-8004.1129.1 0.87 +0.8
1,078,351 + Xcc-8004.1129.1 0.87 -0.0
1,078,351 + Xcc-8004.1129.1 0.87 -0.5
1,078,351 + Xcc-8004.1129.1 0.87 +2.0
1,078,352 - Xcc-8004.1129.1 0.87 +1.8
1,078,476 + -1.1
1,078,479 + +0.8
1,078,479 + -1.2
1,078,479 + +0.4
1,078,480 - +0.6
1,078,480 - +0.5
1,078,480 - +0.2
1,078,480 - -0.3
1,078,487 - -1.2
1,078,509 + +1.6
1,078,510 - -2.2
1,078,536 + +0.2
1,078,537 - -0.1
1,078,539 + +0.6
1,078,539 + +1.2
1,078,614 + Xcc-8004.1130.1 0.11 -1.5
1,078,615 - Xcc-8004.1130.1 0.11 +0.6
1,078,615 - Xcc-8004.1130.1 0.11 +0.5
1,078,615 - Xcc-8004.1130.1 0.11 -0.2
1,078,615 - Xcc-8004.1130.1 0.11 +2.1
1,078,615 - Xcc-8004.1130.1 0.11 +0.4
1,078,636 - Xcc-8004.1130.1 0.13 +1.6
1,078,638 - Xcc-8004.1130.1 0.13 -2.0
1,078,735 - Xcc-8004.1130.1 0.19 -2.1
1,078,735 - Xcc-8004.1130.1 0.19 +0.2
1,078,735 - Xcc-8004.1130.1 0.19 -0.2
1,078,794 + Xcc-8004.1130.1 0.23 -0.1
1,078,795 - Xcc-8004.1130.1 0.23 -0.6
1,078,795 - Xcc-8004.1130.1 0.23 -1.2
1,078,795 - Xcc-8004.1130.1 0.23 -0.6
1,078,797 + Xcc-8004.1130.1 0.23 -1.0
1,078,797 + Xcc-8004.1130.1 0.23 -0.7
1,078,797 + Xcc-8004.1130.1 0.23 -0.6
1,078,798 - Xcc-8004.1130.1 0.23 -0.5
1,078,798 - Xcc-8004.1130.1 0.23 +1.6
1,078,798 - Xcc-8004.1130.1 0.23 +1.5
1,078,798 - Xcc-8004.1130.1 0.23 +0.3
1,078,798 - Xcc-8004.1130.1 0.23 -0.4
1,078,798 - Xcc-8004.1130.1 0.23 -0.2
1,078,798 - Xcc-8004.1130.1 0.23 -1.2
1,078,803 + Xcc-8004.1130.1 0.24 +0.2
1,078,803 + Xcc-8004.1130.1 0.24 +0.6
1,078,803 + Xcc-8004.1130.1 0.24 -0.9
1,078,804 - Xcc-8004.1130.1 0.24 -0.3
1,079,040 + Xcc-8004.1130.1 0.40 -0.7
1,079,041 - Xcc-8004.1130.1 0.40 -0.3
1,079,041 - Xcc-8004.1130.1 0.40 +2.1
1,079,041 - Xcc-8004.1130.1 0.40 -1.2
1,079,235 + Xcc-8004.1130.1 0.53 +0.2
1,079,235 + Xcc-8004.1130.1 0.53 -2.3
1,079,298 + Xcc-8004.1130.1 0.57 +0.6
1,079,298 + Xcc-8004.1130.1 0.57 +0.2
1,079,299 - Xcc-8004.1130.1 0.57 +1.8
1,079,299 - Xcc-8004.1130.1 0.57 +0.0
1,079,299 - Xcc-8004.1130.1 0.57 +0.7
1,079,299 - Xcc-8004.1130.1 0.57 +1.8
1,079,312 + Xcc-8004.1130.1 0.58 -0.2
1,079,312 + Xcc-8004.1130.1 0.58 -1.8
1,079,313 - Xcc-8004.1130.1 0.58 -0.9
1,079,316 + Xcc-8004.1130.1 0.58 +1.5
1,079,316 + Xcc-8004.1130.1 0.58 -0.4
1,079,316 + Xcc-8004.1130.1 0.58 +0.7
1,079,317 - Xcc-8004.1130.1 0.58 -1.8
1,079,496 + Xcc-8004.1130.1 0.70 +0.9
1,079,496 + Xcc-8004.1130.1 0.70 +1.4
1,079,497 - Xcc-8004.1130.1 0.70 -2.7
1,079,497 - Xcc-8004.1130.1 0.70 -0.2
1,079,497 - Xcc-8004.1130.1 0.70 -0.6
1,079,575 - Xcc-8004.1130.1 0.76 -1.0

Or see this region's nucleotide sequence