Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.1113.1

Experiment: Citric Acid 10mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.1111.1 and Xcc-8004.1112.1 are separated by 125 nucleotidesXcc-8004.1112.1 and Xcc-8004.1113.1 overlap by 68 nucleotidesXcc-8004.1113.1 and Xcc-8004.1115.1 overlap by 2 nucleotides Xcc-8004.1111.1: Xcc-8004.1111.1 - FIG01211770: hypothetical protein, at 1,058,412 to 1,059,071 Xcc-8004.1111.1 Xcc-8004.1112.1: Xcc-8004.1112.1 - Short chain dehydrogenase, at 1,059,197 to 1,060,012 Xcc-8004.1112.1 Xcc-8004.1113.1: Xcc-8004.1113.1 - hypothetical protein, at 1,059,945 to 1,060,547 Xcc-8004.1113.1 Xcc-8004.1115.1: Xcc-8004.1115.1 - FIG01210202: hypothetical protein, at 1,060,546 to 1,061,592 Xcc-8004.1115.1 Position (kb) 1059 1060 1061Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1058.980 kb on + strand, within Xcc-8004.1111.1at 1058.980 kb on + strand, within Xcc-8004.1111.1at 1058.981 kb on - strand, within Xcc-8004.1111.1at 1058.981 kb on - strand, within Xcc-8004.1111.1at 1058.981 kb on - strand, within Xcc-8004.1111.1at 1058.981 kb on - strand, within Xcc-8004.1111.1at 1058.981 kb on - strand, within Xcc-8004.1111.1at 1058.981 kb on - strand, within Xcc-8004.1111.1at 1059.006 kb on + strandat 1059.158 kb on + strandat 1059.158 kb on + strandat 1059.158 kb on + strandat 1059.159 kb on - strandat 1059.159 kb on - strandat 1059.159 kb on - strandat 1059.190 kb on + strandat 1059.768 kb on + strand, within Xcc-8004.1112.1at 1059.768 kb on + strand, within Xcc-8004.1112.1at 1059.768 kb on + strand, within Xcc-8004.1112.1at 1059.768 kb on + strand, within Xcc-8004.1112.1at 1059.768 kb on + strand, within Xcc-8004.1112.1at 1059.768 kb on + strand, within Xcc-8004.1112.1at 1059.769 kb on - strand, within Xcc-8004.1112.1at 1059.769 kb on - strand, within Xcc-8004.1112.1at 1059.962 kb on + strandat 1059.990 kb on + strandat 1060.228 kb on + strand, within Xcc-8004.1113.1at 1060.228 kb on + strand, within Xcc-8004.1113.1at 1060.229 kb on - strand, within Xcc-8004.1113.1at 1060.256 kb on + strand, within Xcc-8004.1113.1at 1060.375 kb on - strand, within Xcc-8004.1113.1at 1060.585 kb on + strandat 1060.585 kb on + strandat 1060.586 kb on - strandat 1060.586 kb on - strandat 1060.586 kb on - strandat 1060.623 kb on - strandat 1060.623 kb on - strandat 1060.768 kb on + strand, within Xcc-8004.1115.1at 1060.769 kb on - strand, within Xcc-8004.1115.1at 1060.769 kb on - strand, within Xcc-8004.1115.1at 1060.769 kb on - strand, within Xcc-8004.1115.1at 1060.769 kb on - strand, within Xcc-8004.1115.1at 1060.769 kb on - strand, within Xcc-8004.1115.1at 1060.769 kb on - strand, within Xcc-8004.1115.1at 1060.813 kb on + strand, within Xcc-8004.1115.1at 1060.813 kb on + strand, within Xcc-8004.1115.1at 1060.813 kb on + strand, within Xcc-8004.1115.1at 1060.813 kb on + strand, within Xcc-8004.1115.1at 1060.813 kb on + strand, within Xcc-8004.1115.1at 1060.814 kb on - strand, within Xcc-8004.1115.1at 1060.814 kb on - strand, within Xcc-8004.1115.1at 1060.814 kb on - strand, within Xcc-8004.1115.1at 1060.814 kb on - strand, within Xcc-8004.1115.1at 1060.814 kb on - strand, within Xcc-8004.1115.1at 1060.822 kb on + strand, within Xcc-8004.1115.1at 1060.822 kb on + strand, within Xcc-8004.1115.1at 1060.822 kb on + strand, within Xcc-8004.1115.1at 1060.822 kb on + strand, within Xcc-8004.1115.1at 1060.822 kb on + strand, within Xcc-8004.1115.1at 1060.822 kb on + strand, within Xcc-8004.1115.1at 1060.823 kb on - strand, within Xcc-8004.1115.1at 1060.823 kb on - strand, within Xcc-8004.1115.1at 1060.823 kb on - strand, within Xcc-8004.1115.1at 1060.823 kb on - strand, within Xcc-8004.1115.1at 1060.823 kb on - strand, within Xcc-8004.1115.1at 1060.823 kb on - strand, within Xcc-8004.1115.1at 1060.823 kb on - strand, within Xcc-8004.1115.1at 1060.823 kb on - strand, within Xcc-8004.1115.1at 1060.991 kb on - strand, within Xcc-8004.1115.1at 1061.042 kb on - strand, within Xcc-8004.1115.1at 1061.044 kb on + strand, within Xcc-8004.1115.1at 1061.044 kb on + strand, within Xcc-8004.1115.1at 1061.044 kb on + strand, within Xcc-8004.1115.1at 1061.082 kb on + strand, within Xcc-8004.1115.1at 1061.082 kb on + strand, within Xcc-8004.1115.1at 1061.082 kb on + strand, within Xcc-8004.1115.1at 1061.082 kb on + strand, within Xcc-8004.1115.1at 1061.083 kb on - strand, within Xcc-8004.1115.1at 1061.116 kb on + strand, within Xcc-8004.1115.1at 1061.116 kb on + strand, within Xcc-8004.1115.1at 1061.116 kb on + strand, within Xcc-8004.1115.1at 1061.116 kb on + strand, within Xcc-8004.1115.1at 1061.116 kb on + strand, within Xcc-8004.1115.1at 1061.116 kb on + strand, within Xcc-8004.1115.1at 1061.117 kb on - strand, within Xcc-8004.1115.1at 1061.117 kb on - strand, within Xcc-8004.1115.1at 1061.118 kb on + strand, within Xcc-8004.1115.1at 1061.118 kb on + strand, within Xcc-8004.1115.1at 1061.236 kb on + strand, within Xcc-8004.1115.1at 1061.236 kb on + strand, within Xcc-8004.1115.1at 1061.237 kb on - strand, within Xcc-8004.1115.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Citric Acid 10mM (C)
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1,058,980 + Xcc-8004.1111.1 0.86 -0.2
1,058,980 + Xcc-8004.1111.1 0.86 +0.2
1,058,981 - Xcc-8004.1111.1 0.86 -1.6
1,058,981 - Xcc-8004.1111.1 0.86 +0.5
1,058,981 - Xcc-8004.1111.1 0.86 -0.9
1,058,981 - Xcc-8004.1111.1 0.86 +0.2
1,058,981 - Xcc-8004.1111.1 0.86 +0.8
1,058,981 - Xcc-8004.1111.1 0.86 -0.0
1,059,006 + +1.0
1,059,158 + -0.2
1,059,158 + -2.0
1,059,158 + +0.3
1,059,159 - -0.4
1,059,159 - -0.8
1,059,159 - -0.8
1,059,190 + -0.5
1,059,768 + Xcc-8004.1112.1 0.70 -0.0
1,059,768 + Xcc-8004.1112.1 0.70 -1.2
1,059,768 + Xcc-8004.1112.1 0.70 -1.2
1,059,768 + Xcc-8004.1112.1 0.70 -0.8
1,059,768 + Xcc-8004.1112.1 0.70 +1.8
1,059,768 + Xcc-8004.1112.1 0.70 +0.5
1,059,769 - Xcc-8004.1112.1 0.70 +1.8
1,059,769 - Xcc-8004.1112.1 0.70 -0.2
1,059,962 + -1.4
1,059,990 + +0.7
1,060,228 + Xcc-8004.1113.1 0.47 +0.5
1,060,228 + Xcc-8004.1113.1 0.47 +1.0
1,060,229 - Xcc-8004.1113.1 0.47 -0.8
1,060,256 + Xcc-8004.1113.1 0.52 -1.3
1,060,375 - Xcc-8004.1113.1 0.71 -1.0
1,060,585 + +0.4
1,060,585 + -0.8
1,060,586 - -1.1
1,060,586 - +1.6
1,060,586 - +0.7
1,060,623 - +0.2
1,060,623 - -2.6
1,060,768 + Xcc-8004.1115.1 0.21 +0.7
1,060,769 - Xcc-8004.1115.1 0.21 +0.5
1,060,769 - Xcc-8004.1115.1 0.21 +2.1
1,060,769 - Xcc-8004.1115.1 0.21 +0.1
1,060,769 - Xcc-8004.1115.1 0.21 +0.0
1,060,769 - Xcc-8004.1115.1 0.21 +1.2
1,060,769 - Xcc-8004.1115.1 0.21 -0.8
1,060,813 + Xcc-8004.1115.1 0.26 +1.0
1,060,813 + Xcc-8004.1115.1 0.26 -1.8
1,060,813 + Xcc-8004.1115.1 0.26 -1.4
1,060,813 + Xcc-8004.1115.1 0.26 +0.9
1,060,813 + Xcc-8004.1115.1 0.26 -0.4
1,060,814 - Xcc-8004.1115.1 0.26 +0.2
1,060,814 - Xcc-8004.1115.1 0.26 -0.7
1,060,814 - Xcc-8004.1115.1 0.26 +0.4
1,060,814 - Xcc-8004.1115.1 0.26 -0.8
1,060,814 - Xcc-8004.1115.1 0.26 +0.9
1,060,822 + Xcc-8004.1115.1 0.26 +0.0
1,060,822 + Xcc-8004.1115.1 0.26 -1.0
1,060,822 + Xcc-8004.1115.1 0.26 -1.5
1,060,822 + Xcc-8004.1115.1 0.26 -1.5
1,060,822 + Xcc-8004.1115.1 0.26 -1.4
1,060,822 + Xcc-8004.1115.1 0.26 +0.7
1,060,823 - Xcc-8004.1115.1 0.26 -0.6
1,060,823 - Xcc-8004.1115.1 0.26 -1.9
1,060,823 - Xcc-8004.1115.1 0.26 -2.0
1,060,823 - Xcc-8004.1115.1 0.26 -0.0
1,060,823 - Xcc-8004.1115.1 0.26 +0.8
1,060,823 - Xcc-8004.1115.1 0.26 -1.6
1,060,823 - Xcc-8004.1115.1 0.26 +0.8
1,060,823 - Xcc-8004.1115.1 0.26 -0.1
1,060,991 - Xcc-8004.1115.1 0.43 +0.8
1,061,042 - Xcc-8004.1115.1 0.47 +1.2
1,061,044 + Xcc-8004.1115.1 0.48 -3.1
1,061,044 + Xcc-8004.1115.1 0.48 +0.6
1,061,044 + Xcc-8004.1115.1 0.48 +0.0
1,061,082 + Xcc-8004.1115.1 0.51 -0.9
1,061,082 + Xcc-8004.1115.1 0.51 -1.4
1,061,082 + Xcc-8004.1115.1 0.51 -0.8
1,061,082 + Xcc-8004.1115.1 0.51 +0.5
1,061,083 - Xcc-8004.1115.1 0.51 +0.6
1,061,116 + Xcc-8004.1115.1 0.54 -0.5
1,061,116 + Xcc-8004.1115.1 0.54 -0.8
1,061,116 + Xcc-8004.1115.1 0.54 -1.4
1,061,116 + Xcc-8004.1115.1 0.54 -1.6
1,061,116 + Xcc-8004.1115.1 0.54 -0.4
1,061,116 + Xcc-8004.1115.1 0.54 +0.5
1,061,117 - Xcc-8004.1115.1 0.55 -0.2
1,061,117 - Xcc-8004.1115.1 0.55 -2.5
1,061,118 + Xcc-8004.1115.1 0.55 -0.6
1,061,118 + Xcc-8004.1115.1 0.55 +0.3
1,061,236 + Xcc-8004.1115.1 0.66 +0.7
1,061,236 + Xcc-8004.1115.1 0.66 -1.6
1,061,237 - Xcc-8004.1115.1 0.66 -1.3

Or see this region's nucleotide sequence