Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5379.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5378.1 and Xcc-8004.5379.1 are separated by 79 nucleotidesXcc-8004.5379.1 and Xcc-8004.5380.1 are separated by 387 nucleotides Xcc-8004.5378.1: Xcc-8004.5378.1 - Transcriptional regulator, at 5,108,002 to 5,108,922 Xcc-8004.5378.1 Xcc-8004.5379.1: Xcc-8004.5379.1 - FIG01210813: hypothetical protein, at 5,109,002 to 5,109,256 Xcc-8004.5379.1 Xcc-8004.5380.1: Xcc-8004.5380.1 - FIG01212194: hypothetical protein, at 5,109,644 to 5,110,024 Xcc-8004.5380.1 Position (kb) 5109 5110Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 5108.194 kb on + strand, within Xcc-8004.5378.1at 5108.194 kb on + strand, within Xcc-8004.5378.1at 5108.194 kb on + strand, within Xcc-8004.5378.1at 5108.195 kb on - strand, within Xcc-8004.5378.1at 5108.195 kb on - strand, within Xcc-8004.5378.1at 5108.195 kb on - strand, within Xcc-8004.5378.1at 5108.195 kb on - strand, within Xcc-8004.5378.1at 5108.195 kb on - strand, within Xcc-8004.5378.1at 5108.195 kb on - strand, within Xcc-8004.5378.1at 5108.195 kb on - strand, within Xcc-8004.5378.1at 5108.203 kb on + strand, within Xcc-8004.5378.1at 5108.203 kb on + strand, within Xcc-8004.5378.1at 5108.203 kb on + strand, within Xcc-8004.5378.1at 5108.203 kb on + strand, within Xcc-8004.5378.1at 5108.203 kb on + strand, within Xcc-8004.5378.1at 5108.204 kb on - strand, within Xcc-8004.5378.1at 5108.204 kb on - strand, within Xcc-8004.5378.1at 5108.204 kb on - strand, within Xcc-8004.5378.1at 5108.204 kb on - strand, within Xcc-8004.5378.1at 5108.515 kb on + strand, within Xcc-8004.5378.1at 5108.515 kb on + strand, within Xcc-8004.5378.1at 5108.515 kb on + strand, within Xcc-8004.5378.1at 5108.515 kb on + strand, within Xcc-8004.5378.1at 5108.515 kb on + strand, within Xcc-8004.5378.1at 5108.516 kb on - strand, within Xcc-8004.5378.1at 5108.516 kb on - strand, within Xcc-8004.5378.1at 5108.516 kb on - strand, within Xcc-8004.5378.1at 5108.516 kb on - strand, within Xcc-8004.5378.1at 5108.578 kb on + strand, within Xcc-8004.5378.1at 5108.578 kb on + strand, within Xcc-8004.5378.1at 5108.578 kb on + strand, within Xcc-8004.5378.1at 5108.578 kb on + strand, within Xcc-8004.5378.1at 5108.578 kb on + strand, within Xcc-8004.5378.1at 5108.578 kb on + strand, within Xcc-8004.5378.1at 5108.578 kb on + strand, within Xcc-8004.5378.1at 5108.578 kb on + strand, within Xcc-8004.5378.1at 5108.578 kb on + strand, within Xcc-8004.5378.1at 5108.579 kb on - strand, within Xcc-8004.5378.1at 5108.579 kb on - strand, within Xcc-8004.5378.1at 5108.579 kb on - strand, within Xcc-8004.5378.1at 5108.579 kb on - strand, within Xcc-8004.5378.1at 5108.579 kb on - strand, within Xcc-8004.5378.1at 5108.579 kb on - strand, within Xcc-8004.5378.1at 5108.579 kb on - strand, within Xcc-8004.5378.1at 5108.579 kb on - strand, within Xcc-8004.5378.1at 5108.719 kb on + strand, within Xcc-8004.5378.1at 5108.719 kb on + strand, within Xcc-8004.5378.1at 5108.719 kb on + strand, within Xcc-8004.5378.1at 5108.719 kb on + strand, within Xcc-8004.5378.1at 5108.720 kb on - strand, within Xcc-8004.5378.1at 5108.720 kb on - strand, within Xcc-8004.5378.1at 5108.785 kb on + strand, within Xcc-8004.5378.1at 5108.786 kb on - strand, within Xcc-8004.5378.1at 5108.786 kb on - strand, within Xcc-8004.5378.1at 5108.982 kb on - strandat 5108.990 kb on + strandat 5108.990 kb on + strandat 5109.035 kb on + strand, within Xcc-8004.5379.1at 5109.071 kb on + strand, within Xcc-8004.5379.1at 5109.071 kb on + strand, within Xcc-8004.5379.1at 5109.072 kb on - strand, within Xcc-8004.5379.1at 5109.072 kb on - strand, within Xcc-8004.5379.1at 5109.072 kb on - strand, within Xcc-8004.5379.1at 5109.122 kb on + strand, within Xcc-8004.5379.1at 5109.122 kb on + strand, within Xcc-8004.5379.1at 5109.122 kb on + strand, within Xcc-8004.5379.1at 5109.122 kb on + strand, within Xcc-8004.5379.1at 5109.122 kb on + strand, within Xcc-8004.5379.1at 5109.122 kb on + strand, within Xcc-8004.5379.1at 5109.122 kb on + strand, within Xcc-8004.5379.1at 5109.122 kb on + strand, within Xcc-8004.5379.1at 5109.122 kb on + strand, within Xcc-8004.5379.1at 5109.122 kb on + strand, within Xcc-8004.5379.1at 5109.122 kb on + strand, within Xcc-8004.5379.1at 5109.123 kb on - strand, within Xcc-8004.5379.1at 5109.123 kb on - strand, within Xcc-8004.5379.1at 5109.123 kb on - strand, within Xcc-8004.5379.1at 5109.123 kb on - strand, within Xcc-8004.5379.1at 5109.123 kb on - strand, within Xcc-8004.5379.1at 5109.123 kb on - strand, within Xcc-8004.5379.1at 5109.123 kb on - strand, within Xcc-8004.5379.1at 5109.123 kb on - strand, within Xcc-8004.5379.1at 5109.123 kb on - strand, within Xcc-8004.5379.1at 5109.123 kb on - strand, within Xcc-8004.5379.1at 5109.123 kb on - strand, within Xcc-8004.5379.1at 5109.123 kb on - strand, within Xcc-8004.5379.1at 5109.123 kb on - strand, within Xcc-8004.5379.1at 5109.123 kb on - strand, within Xcc-8004.5379.1at 5109.123 kb on - strand, within Xcc-8004.5379.1at 5109.128 kb on + strand, within Xcc-8004.5379.1at 5109.128 kb on + strand, within Xcc-8004.5379.1at 5109.128 kb on + strand, within Xcc-8004.5379.1at 5109.128 kb on + strand, within Xcc-8004.5379.1at 5109.128 kb on + strand, within Xcc-8004.5379.1at 5109.128 kb on + strand, within Xcc-8004.5379.1at 5109.128 kb on + strand, within Xcc-8004.5379.1at 5109.129 kb on - strand, within Xcc-8004.5379.1at 5109.129 kb on - strand, within Xcc-8004.5379.1at 5109.129 kb on - strand, within Xcc-8004.5379.1at 5109.129 kb on - strand, within Xcc-8004.5379.1at 5109.129 kb on - strand, within Xcc-8004.5379.1at 5109.129 kb on - strand, within Xcc-8004.5379.1at 5109.129 kb on - strand, within Xcc-8004.5379.1at 5109.129 kb on - strand, within Xcc-8004.5379.1at 5109.129 kb on - strand, within Xcc-8004.5379.1at 5109.129 kb on - strand, within Xcc-8004.5379.1at 5109.130 kb on + strand, within Xcc-8004.5379.1at 5109.131 kb on - strand, within Xcc-8004.5379.1at 5109.131 kb on - strand, within Xcc-8004.5379.1at 5109.202 kb on + strand, within Xcc-8004.5379.1at 5109.202 kb on + strand, within Xcc-8004.5379.1at 5109.203 kb on - strand, within Xcc-8004.5379.1at 5109.203 kb on - strand, within Xcc-8004.5379.1at 5109.206 kb on + strand, within Xcc-8004.5379.1at 5109.206 kb on + strand, within Xcc-8004.5379.1at 5109.206 kb on + strand, within Xcc-8004.5379.1at 5109.206 kb on + strand, within Xcc-8004.5379.1at 5109.206 kb on + strand, within Xcc-8004.5379.1at 5109.206 kb on + strand, within Xcc-8004.5379.1at 5109.206 kb on + strand, within Xcc-8004.5379.1at 5109.206 kb on + strand, within Xcc-8004.5379.1at 5109.206 kb on + strand, within Xcc-8004.5379.1at 5109.206 kb on + strand, within Xcc-8004.5379.1at 5109.206 kb on + strand, within Xcc-8004.5379.1at 5109.206 kb on + strand, within Xcc-8004.5379.1at 5109.206 kb on + strand, within Xcc-8004.5379.1at 5109.206 kb on + strand, within Xcc-8004.5379.1at 5109.206 kb on + strand, within Xcc-8004.5379.1at 5109.207 kb on - strand, within Xcc-8004.5379.1at 5109.207 kb on - strand, within Xcc-8004.5379.1at 5109.207 kb on - strand, within Xcc-8004.5379.1at 5109.207 kb on - strand, within Xcc-8004.5379.1at 5109.207 kb on - strand, within Xcc-8004.5379.1at 5109.207 kb on - strand, within Xcc-8004.5379.1at 5109.207 kb on - strand, within Xcc-8004.5379.1at 5109.207 kb on - strand, within Xcc-8004.5379.1at 5109.207 kb on - strand, within Xcc-8004.5379.1at 5109.207 kb on - strand, within Xcc-8004.5379.1at 5109.207 kb on - strand, within Xcc-8004.5379.1at 5109.207 kb on - strand, within Xcc-8004.5379.1at 5109.207 kb on - strand, within Xcc-8004.5379.1at 5109.207 kb on - strand, within Xcc-8004.5379.1at 5109.234 kb on - strandat 5109.254 kb on + strandat 5109.254 kb on + strandat 5109.255 kb on - strandat 5109.255 kb on - strandat 5109.255 kb on - strandat 5109.309 kb on - strandat 5109.309 kb on - strandat 5109.309 kb on - strandat 5109.351 kb on + strandat 5109.351 kb on + strandat 5109.351 kb on + strandat 5109.351 kb on + strandat 5109.351 kb on + strandat 5109.351 kb on + strandat 5109.352 kb on - strandat 5109.352 kb on - strandat 5109.352 kb on - strandat 5109.352 kb on - strandat 5109.352 kb on - strandat 5109.352 kb on - strandat 5109.352 kb on - strandat 5109.352 kb on - strandat 5109.352 kb on - strandat 5109.352 kb on - strandat 5109.352 kb on - strandat 5109.399 kb on + strandat 5109.399 kb on + strandat 5109.399 kb on + strandat 5109.399 kb on + strandat 5109.399 kb on + strandat 5109.400 kb on - strandat 5109.725 kb on + strand, within Xcc-8004.5380.1at 5109.725 kb on + strand, within Xcc-8004.5380.1at 5109.726 kb on - strand, within Xcc-8004.5380.1at 5109.752 kb on + strand, within Xcc-8004.5380.1at 5109.753 kb on - strand, within Xcc-8004.5380.1at 5109.803 kb on + strand, within Xcc-8004.5380.1at 5109.803 kb on + strand, within Xcc-8004.5380.1at 5109.803 kb on + strand, within Xcc-8004.5380.1at 5109.804 kb on - strand, within Xcc-8004.5380.1at 5109.804 kb on - strand, within Xcc-8004.5380.1at 5109.804 kb on - strand, within Xcc-8004.5380.1at 5109.804 kb on - strand, within Xcc-8004.5380.1at 5109.804 kb on - strand, within Xcc-8004.5380.1at 5109.804 kb on - strand, within Xcc-8004.5380.1at 5109.804 kb on - strand, within Xcc-8004.5380.1at 5109.983 kb on + strand, within Xcc-8004.5380.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes)
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5,108,194 + Xcc-8004.5378.1 0.21 -2.9
5,108,194 + Xcc-8004.5378.1 0.21 +0.2
5,108,194 + Xcc-8004.5378.1 0.21 -0.1
5,108,195 - Xcc-8004.5378.1 0.21 +1.2
5,108,195 - Xcc-8004.5378.1 0.21 +3.3
5,108,195 - Xcc-8004.5378.1 0.21 -0.5
5,108,195 - Xcc-8004.5378.1 0.21 -0.4
5,108,195 - Xcc-8004.5378.1 0.21 -2.2
5,108,195 - Xcc-8004.5378.1 0.21 -1.4
5,108,195 - Xcc-8004.5378.1 0.21 -0.3
5,108,203 + Xcc-8004.5378.1 0.22 -0.7
5,108,203 + Xcc-8004.5378.1 0.22 -1.9
5,108,203 + Xcc-8004.5378.1 0.22 +1.5
5,108,203 + Xcc-8004.5378.1 0.22 -1.4
5,108,203 + Xcc-8004.5378.1 0.22 +0.0
5,108,204 - Xcc-8004.5378.1 0.22 +2.4
5,108,204 - Xcc-8004.5378.1 0.22 +1.2
5,108,204 - Xcc-8004.5378.1 0.22 -1.9
5,108,204 - Xcc-8004.5378.1 0.22 -1.9
5,108,515 + Xcc-8004.5378.1 0.56 -2.6
5,108,515 + Xcc-8004.5378.1 0.56 -1.4
5,108,515 + Xcc-8004.5378.1 0.56 -1.7
5,108,515 + Xcc-8004.5378.1 0.56 -2.4
5,108,515 + Xcc-8004.5378.1 0.56 -1.5
5,108,516 - Xcc-8004.5378.1 0.56 -1.1
5,108,516 - Xcc-8004.5378.1 0.56 -0.4
5,108,516 - Xcc-8004.5378.1 0.56 -0.5
5,108,516 - Xcc-8004.5378.1 0.56 +0.7
5,108,578 + Xcc-8004.5378.1 0.63 +1.4
5,108,578 + Xcc-8004.5378.1 0.63 -0.5
5,108,578 + Xcc-8004.5378.1 0.63 +0.5
5,108,578 + Xcc-8004.5378.1 0.63 -1.0
5,108,578 + Xcc-8004.5378.1 0.63 -1.0
5,108,578 + Xcc-8004.5378.1 0.63 +1.0
5,108,578 + Xcc-8004.5378.1 0.63 +1.4
5,108,578 + Xcc-8004.5378.1 0.63 -0.3
5,108,578 + Xcc-8004.5378.1 0.63 -0.1
5,108,579 - Xcc-8004.5378.1 0.63 -0.7
5,108,579 - Xcc-8004.5378.1 0.63 -0.6
5,108,579 - Xcc-8004.5378.1 0.63 -1.9
5,108,579 - Xcc-8004.5378.1 0.63 +0.1
5,108,579 - Xcc-8004.5378.1 0.63 +2.5
5,108,579 - Xcc-8004.5378.1 0.63 -1.5
5,108,579 - Xcc-8004.5378.1 0.63 +1.3
5,108,579 - Xcc-8004.5378.1 0.63 +2.6
5,108,719 + Xcc-8004.5378.1 0.78 +2.1
5,108,719 + Xcc-8004.5378.1 0.78 -2.1
5,108,719 + Xcc-8004.5378.1 0.78 -1.2
5,108,719 + Xcc-8004.5378.1 0.78 +1.0
5,108,720 - Xcc-8004.5378.1 0.78 -3.2
5,108,720 - Xcc-8004.5378.1 0.78 -0.7
5,108,785 + Xcc-8004.5378.1 0.85 -0.4
5,108,786 - Xcc-8004.5378.1 0.85 -1.1
5,108,786 - Xcc-8004.5378.1 0.85 -0.4
5,108,982 - -1.4
5,108,990 + -0.4
5,108,990 + +0.4
5,109,035 + Xcc-8004.5379.1 0.13 -1.4
5,109,071 + Xcc-8004.5379.1 0.27 -3.4
5,109,071 + Xcc-8004.5379.1 0.27 +2.4
5,109,072 - Xcc-8004.5379.1 0.27 -1.6
5,109,072 - Xcc-8004.5379.1 0.27 +1.2
5,109,072 - Xcc-8004.5379.1 0.27 -0.5
5,109,122 + Xcc-8004.5379.1 0.47 -1.7
5,109,122 + Xcc-8004.5379.1 0.47 +0.9
5,109,122 + Xcc-8004.5379.1 0.47 -0.7
5,109,122 + Xcc-8004.5379.1 0.47 -1.7
5,109,122 + Xcc-8004.5379.1 0.47 -0.8
5,109,122 + Xcc-8004.5379.1 0.47 +1.4
5,109,122 + Xcc-8004.5379.1 0.47 -1.9
5,109,122 + Xcc-8004.5379.1 0.47 +2.3
5,109,122 + Xcc-8004.5379.1 0.47 -2.3
5,109,122 + Xcc-8004.5379.1 0.47 -1.6
5,109,122 + Xcc-8004.5379.1 0.47 -1.7
5,109,123 - Xcc-8004.5379.1 0.47 +0.6
5,109,123 - Xcc-8004.5379.1 0.47 +0.5
5,109,123 - Xcc-8004.5379.1 0.47 +1.3
5,109,123 - Xcc-8004.5379.1 0.47 +1.7
5,109,123 - Xcc-8004.5379.1 0.47 -0.5
5,109,123 - Xcc-8004.5379.1 0.47 -0.9
5,109,123 - Xcc-8004.5379.1 0.47 +2.8
5,109,123 - Xcc-8004.5379.1 0.47 +2.2
5,109,123 - Xcc-8004.5379.1 0.47 +0.7
5,109,123 - Xcc-8004.5379.1 0.47 +1.7
5,109,123 - Xcc-8004.5379.1 0.47 -0.1
5,109,123 - Xcc-8004.5379.1 0.47 +0.7
5,109,123 - Xcc-8004.5379.1 0.47 -0.9
5,109,123 - Xcc-8004.5379.1 0.47 +0.8
5,109,123 - Xcc-8004.5379.1 0.47 +1.1
5,109,128 + Xcc-8004.5379.1 0.49 -2.8
5,109,128 + Xcc-8004.5379.1 0.49 -1.3
5,109,128 + Xcc-8004.5379.1 0.49 +2.3
5,109,128 + Xcc-8004.5379.1 0.49 -0.3
5,109,128 + Xcc-8004.5379.1 0.49 +0.6
5,109,128 + Xcc-8004.5379.1 0.49 -0.5
5,109,128 + Xcc-8004.5379.1 0.49 +2.1
5,109,129 - Xcc-8004.5379.1 0.50 +3.3
5,109,129 - Xcc-8004.5379.1 0.50 +0.8
5,109,129 - Xcc-8004.5379.1 0.50 -2.0
5,109,129 - Xcc-8004.5379.1 0.50 -0.6
5,109,129 - Xcc-8004.5379.1 0.50 -2.6
5,109,129 - Xcc-8004.5379.1 0.50 -0.4
5,109,129 - Xcc-8004.5379.1 0.50 +4.6
5,109,129 - Xcc-8004.5379.1 0.50 -1.8
5,109,129 - Xcc-8004.5379.1 0.50 +4.4
5,109,129 - Xcc-8004.5379.1 0.50 -2.2
5,109,130 + Xcc-8004.5379.1 0.50 +0.7
5,109,131 - Xcc-8004.5379.1 0.51 +0.8
5,109,131 - Xcc-8004.5379.1 0.51 +1.0
5,109,202 + Xcc-8004.5379.1 0.78 -0.8
5,109,202 + Xcc-8004.5379.1 0.78 +0.0
5,109,203 - Xcc-8004.5379.1 0.79 -3.3
5,109,203 - Xcc-8004.5379.1 0.79 -0.4
5,109,206 + Xcc-8004.5379.1 0.80 +3.5
5,109,206 + Xcc-8004.5379.1 0.80 -1.3
5,109,206 + Xcc-8004.5379.1 0.80 -2.4
5,109,206 + Xcc-8004.5379.1 0.80 -2.9
5,109,206 + Xcc-8004.5379.1 0.80 +1.7
5,109,206 + Xcc-8004.5379.1 0.80 +1.9
5,109,206 + Xcc-8004.5379.1 0.80 +1.2
5,109,206 + Xcc-8004.5379.1 0.80 +1.0
5,109,206 + Xcc-8004.5379.1 0.80 -0.8
5,109,206 + Xcc-8004.5379.1 0.80 +2.3
5,109,206 + Xcc-8004.5379.1 0.80 -1.7
5,109,206 + Xcc-8004.5379.1 0.80 -0.2
5,109,206 + Xcc-8004.5379.1 0.80 +0.3
5,109,206 + Xcc-8004.5379.1 0.80 -1.9
5,109,206 + Xcc-8004.5379.1 0.80 -2.7
5,109,207 - Xcc-8004.5379.1 0.80 +3.2
5,109,207 - Xcc-8004.5379.1 0.80 -1.6
5,109,207 - Xcc-8004.5379.1 0.80 +0.1
5,109,207 - Xcc-8004.5379.1 0.80 +0.5
5,109,207 - Xcc-8004.5379.1 0.80 +0.2
5,109,207 - Xcc-8004.5379.1 0.80 -0.7
5,109,207 - Xcc-8004.5379.1 0.80 -2.2
5,109,207 - Xcc-8004.5379.1 0.80 -1.1
5,109,207 - Xcc-8004.5379.1 0.80 -1.9
5,109,207 - Xcc-8004.5379.1 0.80 +1.1
5,109,207 - Xcc-8004.5379.1 0.80 +1.5
5,109,207 - Xcc-8004.5379.1 0.80 -0.9
5,109,207 - Xcc-8004.5379.1 0.80 +0.4
5,109,207 - Xcc-8004.5379.1 0.80 -0.1
5,109,234 - -1.9
5,109,254 + +2.1
5,109,254 + -0.5
5,109,255 - +0.1
5,109,255 - -0.9
5,109,255 - -0.8
5,109,309 - +1.7
5,109,309 - -2.2
5,109,309 - +0.2
5,109,351 + +1.6
5,109,351 + +0.2
5,109,351 + +0.0
5,109,351 + +0.3
5,109,351 + +1.0
5,109,351 + -1.7
5,109,352 - -0.0
5,109,352 - -0.2
5,109,352 - +2.0
5,109,352 - -0.4
5,109,352 - -0.2
5,109,352 - -2.1
5,109,352 - -0.9
5,109,352 - +2.3
5,109,352 - -0.0
5,109,352 - +0.5
5,109,352 - -0.2
5,109,399 + +1.2
5,109,399 + -2.7
5,109,399 + +0.8
5,109,399 + -0.3
5,109,399 + +0.2
5,109,400 - +1.6
5,109,725 + Xcc-8004.5380.1 0.21 +1.5
5,109,725 + Xcc-8004.5380.1 0.21 -1.0
5,109,726 - Xcc-8004.5380.1 0.22 +1.5
5,109,752 + Xcc-8004.5380.1 0.28 -1.2
5,109,753 - Xcc-8004.5380.1 0.29 -1.6
5,109,803 + Xcc-8004.5380.1 0.42 -0.1
5,109,803 + Xcc-8004.5380.1 0.42 +0.5
5,109,803 + Xcc-8004.5380.1 0.42 +2.1
5,109,804 - Xcc-8004.5380.1 0.42 -0.0
5,109,804 - Xcc-8004.5380.1 0.42 -0.2
5,109,804 - Xcc-8004.5380.1 0.42 +0.3
5,109,804 - Xcc-8004.5380.1 0.42 -2.6
5,109,804 - Xcc-8004.5380.1 0.42 +0.9
5,109,804 - Xcc-8004.5380.1 0.42 +1.7
5,109,804 - Xcc-8004.5380.1 0.42 -1.2
5,109,983 + Xcc-8004.5380.1 0.89 -0.7

Or see this region's nucleotide sequence