Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.527.1 and Xcc-8004.528.1 are separated by 551 nucleotides
Xcc-8004.527.1: Xcc-8004.527.1 - ribosomal subunit interface protein, putative, at 480,265 to 480,606
Xcc-8004.527.1
Xcc-8004.528.1: Xcc-8004.528.1 - hypothetical protein, at 481,158 to 483,623
Xcc-8004.528.1
Position (kb) 481
482
483
484 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 480.169 kb on + strand at 480.169 kb on + strand at 480.170 kb on - strand at 480.266 kb on + strand at 480.266 kb on + strand at 480.266 kb on + strand at 480.266 kb on + strand at 480.267 kb on - strand at 480.267 kb on - strand at 480.267 kb on - strand at 480.267 kb on - strand at 480.267 kb on - strand at 480.267 kb on - strand at 480.267 kb on - strand at 480.267 kb on - strand at 480.267 kb on - strand at 480.267 kb on - strand at 480.267 kb on - strand at 480.267 kb on - strand at 480.430 kb on - strand, within Xcc-8004.527.1 at 480.606 kb on + strand at 480.606 kb on + strand at 480.606 kb on + strand at 480.607 kb on - strand at 480.821 kb on + strand at 480.822 kb on - strand at 480.856 kb on + strand at 480.856 kb on + strand at 480.857 kb on - strand at 481.005 kb on + strand at 481.005 kb on + strand at 481.005 kb on + strand at 481.006 kb on - strand at 481.110 kb on + strand at 481.111 kb on - strand at 481.111 kb on - strand at 481.111 kb on - strand at 481.150 kb on - strand at 481.417 kb on + strand, within Xcc-8004.528.1 at 481.417 kb on + strand, within Xcc-8004.528.1 at 481.417 kb on + strand, within Xcc-8004.528.1 at 481.417 kb on + strand, within Xcc-8004.528.1 at 481.417 kb on + strand, within Xcc-8004.528.1 at 481.418 kb on - strand, within Xcc-8004.528.1 at 481.418 kb on - strand, within Xcc-8004.528.1 at 481.982 kb on + strand, within Xcc-8004.528.1 at 481.983 kb on - strand, within Xcc-8004.528.1 at 481.983 kb on - strand, within Xcc-8004.528.1 at 481.983 kb on - strand, within Xcc-8004.528.1 at 482.243 kb on + strand, within Xcc-8004.528.1 at 482.244 kb on - strand, within Xcc-8004.528.1 at 482.244 kb on - strand, within Xcc-8004.528.1 at 482.244 kb on - strand, within Xcc-8004.528.1 at 482.274 kb on + strand, within Xcc-8004.528.1 at 482.274 kb on + strand, within Xcc-8004.528.1 at 482.274 kb on + strand, within Xcc-8004.528.1 at 482.890 kb on - strand, within Xcc-8004.528.1 at 482.890 kb on - strand, within Xcc-8004.528.1 at 482.925 kb on - strand, within Xcc-8004.528.1 at 482.925 kb on - strand, within Xcc-8004.528.1 at 483.448 kb on - strand at 483.512 kb on + strand at 483.788 kb on - strand at 483.870 kb on - strand at 484.207 kb on - strand at 484.207 kb on - strand at 484.207 kb on - strand at 484.227 kb on - strand at 484.384 kb on + strand at 484.385 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes) remove 480,169 + +0.7 480,169 + -2.6 480,170 - +0.6 480,266 + -1.1 480,266 + -2.1 480,266 + +0.3 480,266 + +2.4 480,267 - +2.2 480,267 - +1.1 480,267 - -1.1 480,267 - +2.3 480,267 - +0.0 480,267 - +1.1 480,267 - +0.6 480,267 - +0.3 480,267 - +1.1 480,267 - -1.5 480,267 - +2.3 480,267 - +1.0 480,430 - Xcc-8004.527.1 0.48 +1.4 480,606 + +1.1 480,606 + -0.4 480,606 + +0.5 480,607 - +0.7 480,821 + -1.6 480,822 - -0.8 480,856 + +0.3 480,856 + -0.6 480,857 - +3.8 481,005 + +0.1 481,005 + +0.2 481,005 + -2.5 481,006 - +0.8 481,110 + +0.0 481,111 - +1.1 481,111 - -1.8 481,111 - -0.7 481,150 - -0.7 481,417 + Xcc-8004.528.1 0.11 +2.1 481,417 + Xcc-8004.528.1 0.11 -2.0 481,417 + Xcc-8004.528.1 0.11 +0.5 481,417 + Xcc-8004.528.1 0.11 -2.8 481,417 + Xcc-8004.528.1 0.11 -0.4 481,418 - Xcc-8004.528.1 0.11 -1.3 481,418 - Xcc-8004.528.1 0.11 +1.3 481,982 + Xcc-8004.528.1 0.33 +0.3 481,983 - Xcc-8004.528.1 0.33 +0.4 481,983 - Xcc-8004.528.1 0.33 -1.0 481,983 - Xcc-8004.528.1 0.33 +2.1 482,243 + Xcc-8004.528.1 0.44 -1.2 482,244 - Xcc-8004.528.1 0.44 +0.3 482,244 - Xcc-8004.528.1 0.44 +0.9 482,244 - Xcc-8004.528.1 0.44 +1.7 482,274 + Xcc-8004.528.1 0.45 +0.3 482,274 + Xcc-8004.528.1 0.45 +1.3 482,274 + Xcc-8004.528.1 0.45 +0.9 482,890 - Xcc-8004.528.1 0.70 +2.9 482,890 - Xcc-8004.528.1 0.70 -0.7 482,925 - Xcc-8004.528.1 0.72 +2.3 482,925 - Xcc-8004.528.1 0.72 +1.3 483,448 - -0.6 483,512 + +1.3 483,788 - -2.8 483,870 - -2.0 484,207 - +1.3 484,207 - -2.2 484,207 - +1.9 484,227 - -1.0 484,384 + -1.8 484,385 - -0.7
Or see this region's nucleotide sequence