Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Xcc-8004.5210.1 and Xcc-8004.5211.1 are separated by 65 nucleotides Xcc-8004.5211.1 and Xcc-8004.5212.1 overlap by 4 nucleotides Xcc-8004.5212.1 and Xcc-8004.5213.1 are separated by 80 nucleotides
Xcc-8004.5210.1: Xcc-8004.5210.1 - DNA recombination-dependent growth factor C, at 4,944,677 to 4,945,585
Xcc-8004.5210.1
Xcc-8004.5211.1: Xcc-8004.5211.1 - tRNA(Cytosine32)-2-thiocytidine synthetase, at 4,945,651 to 4,946,553
Xcc-8004.5211.1
Xcc-8004.5212.1: Xcc-8004.5212.1 - hypothetical protein, at 4,946,550 to 4,946,888
Xcc-8004.5212.1
Xcc-8004.5213.1: Xcc-8004.5213.1 - Xylose isomerase (EC 5.3.1.5), at 4,946,969 to 4,948,309
Xcc-8004.5213.1
Position (kb) 4946
4947 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4945.653 kb on - strand at 4945.955 kb on + strand, within Xcc-8004.5211.1 at 4945.955 kb on + strand, within Xcc-8004.5211.1 at 4945.955 kb on + strand, within Xcc-8004.5211.1 at 4945.956 kb on - strand, within Xcc-8004.5211.1 at 4945.956 kb on - strand, within Xcc-8004.5211.1 at 4945.956 kb on - strand, within Xcc-8004.5211.1 at 4946.117 kb on + strand, within Xcc-8004.5211.1 at 4946.123 kb on + strand, within Xcc-8004.5211.1 at 4946.123 kb on + strand, within Xcc-8004.5211.1 at 4946.123 kb on + strand, within Xcc-8004.5211.1 at 4946.123 kb on + strand, within Xcc-8004.5211.1 at 4946.124 kb on - strand, within Xcc-8004.5211.1 at 4946.124 kb on - strand, within Xcc-8004.5211.1 at 4946.201 kb on + strand, within Xcc-8004.5211.1 at 4946.201 kb on + strand, within Xcc-8004.5211.1 at 4946.201 kb on + strand, within Xcc-8004.5211.1 at 4946.201 kb on + strand, within Xcc-8004.5211.1 at 4946.202 kb on - strand, within Xcc-8004.5211.1 at 4946.202 kb on - strand, within Xcc-8004.5211.1 at 4946.202 kb on - strand, within Xcc-8004.5211.1 at 4946.202 kb on - strand, within Xcc-8004.5211.1 at 4946.202 kb on - strand, within Xcc-8004.5211.1 at 4946.202 kb on - strand, within Xcc-8004.5211.1 at 4946.202 kb on - strand, within Xcc-8004.5211.1 at 4946.202 kb on - strand, within Xcc-8004.5211.1 at 4946.250 kb on - strand, within Xcc-8004.5211.1 at 4946.366 kb on + strand, within Xcc-8004.5211.1 at 4946.366 kb on + strand, within Xcc-8004.5211.1 at 4946.366 kb on + strand, within Xcc-8004.5211.1 at 4946.366 kb on + strand, within Xcc-8004.5211.1 at 4946.366 kb on + strand, within Xcc-8004.5211.1 at 4946.366 kb on + strand, within Xcc-8004.5211.1 at 4946.367 kb on - strand, within Xcc-8004.5211.1 at 4946.367 kb on - strand, within Xcc-8004.5211.1 at 4946.367 kb on - strand, within Xcc-8004.5211.1 at 4946.367 kb on - strand, within Xcc-8004.5211.1 at 4946.367 kb on - strand, within Xcc-8004.5211.1 at 4946.367 kb on - strand, within Xcc-8004.5211.1 at 4946.367 kb on - strand, within Xcc-8004.5211.1 at 4946.367 kb on - strand, within Xcc-8004.5211.1 at 4946.367 kb on - strand, within Xcc-8004.5211.1 at 4946.367 kb on - strand, within Xcc-8004.5211.1 at 4946.367 kb on - strand, within Xcc-8004.5211.1 at 4946.553 kb on + strand at 4946.554 kb on - strand at 4946.567 kb on + strand at 4946.568 kb on - strand at 4946.568 kb on - strand at 4946.568 kb on - strand at 4946.764 kb on - strand, within Xcc-8004.5212.1 at 4947.003 kb on - strand at 4947.003 kb on - strand at 4947.071 kb on + strand at 4947.071 kb on + strand at 4947.135 kb on - strand, within Xcc-8004.5213.1 at 4947.135 kb on - strand, within Xcc-8004.5213.1 at 4947.135 kb on - strand, within Xcc-8004.5213.1 at 4947.281 kb on + strand, within Xcc-8004.5213.1 at 4947.440 kb on + strand, within Xcc-8004.5213.1 at 4947.440 kb on + strand, within Xcc-8004.5213.1 at 4947.441 kb on - strand, within Xcc-8004.5213.1 at 4947.546 kb on - strand, within Xcc-8004.5213.1 at 4947.546 kb on - strand, within Xcc-8004.5213.1 at 4947.549 kb on + strand, within Xcc-8004.5213.1 at 4947.550 kb on - strand, within Xcc-8004.5213.1 at 4947.550 kb on - strand, within Xcc-8004.5213.1 at 4947.573 kb on - strand, within Xcc-8004.5213.1 at 4947.573 kb on - strand, within Xcc-8004.5213.1 at 4947.573 kb on - strand, within Xcc-8004.5213.1 at 4947.573 kb on - strand, within Xcc-8004.5213.1
Per-strain Table
Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes) remove 4,945,653 - +1.1 4,945,955 + Xcc-8004.5211.1 0.34 -3.4 4,945,955 + Xcc-8004.5211.1 0.34 +1.6 4,945,955 + Xcc-8004.5211.1 0.34 -0.6 4,945,956 - Xcc-8004.5211.1 0.34 +0.2 4,945,956 - Xcc-8004.5211.1 0.34 -2.3 4,945,956 - Xcc-8004.5211.1 0.34 -3.0 4,946,117 + Xcc-8004.5211.1 0.52 -0.3 4,946,123 + Xcc-8004.5211.1 0.52 -0.4 4,946,123 + Xcc-8004.5211.1 0.52 +1.7 4,946,123 + Xcc-8004.5211.1 0.52 +0.4 4,946,123 + Xcc-8004.5211.1 0.52 -1.0 4,946,124 - Xcc-8004.5211.1 0.52 -0.2 4,946,124 - Xcc-8004.5211.1 0.52 -1.7 4,946,201 + Xcc-8004.5211.1 0.61 +2.3 4,946,201 + Xcc-8004.5211.1 0.61 -1.6 4,946,201 + Xcc-8004.5211.1 0.61 -0.7 4,946,201 + Xcc-8004.5211.1 0.61 -0.9 4,946,202 - Xcc-8004.5211.1 0.61 -0.8 4,946,202 - Xcc-8004.5211.1 0.61 +1.4 4,946,202 - Xcc-8004.5211.1 0.61 -0.8 4,946,202 - Xcc-8004.5211.1 0.61 -2.1 4,946,202 - Xcc-8004.5211.1 0.61 -1.4 4,946,202 - Xcc-8004.5211.1 0.61 +1.8 4,946,202 - Xcc-8004.5211.1 0.61 -1.5 4,946,202 - Xcc-8004.5211.1 0.61 -0.2 4,946,250 - Xcc-8004.5211.1 0.66 -0.4 4,946,366 + Xcc-8004.5211.1 0.79 -0.7 4,946,366 + Xcc-8004.5211.1 0.79 +0.1 4,946,366 + Xcc-8004.5211.1 0.79 -1.7 4,946,366 + Xcc-8004.5211.1 0.79 +0.6 4,946,366 + Xcc-8004.5211.1 0.79 -3.1 4,946,366 + Xcc-8004.5211.1 0.79 -2.3 4,946,367 - Xcc-8004.5211.1 0.79 +1.8 4,946,367 - Xcc-8004.5211.1 0.79 -0.0 4,946,367 - Xcc-8004.5211.1 0.79 +1.3 4,946,367 - Xcc-8004.5211.1 0.79 +0.0 4,946,367 - Xcc-8004.5211.1 0.79 +1.3 4,946,367 - Xcc-8004.5211.1 0.79 -1.2 4,946,367 - Xcc-8004.5211.1 0.79 +0.3 4,946,367 - Xcc-8004.5211.1 0.79 -0.8 4,946,367 - Xcc-8004.5211.1 0.79 +0.6 4,946,367 - Xcc-8004.5211.1 0.79 -0.8 4,946,367 - Xcc-8004.5211.1 0.79 -1.7 4,946,553 + -0.3 4,946,554 - +1.2 4,946,567 + -2.0 4,946,568 - +1.9 4,946,568 - -1.9 4,946,568 - +1.4 4,946,764 - Xcc-8004.5212.1 0.63 -1.0 4,947,003 - +0.1 4,947,003 - -0.3 4,947,071 + -1.5 4,947,071 + +1.3 4,947,135 - Xcc-8004.5213.1 0.12 +3.2 4,947,135 - Xcc-8004.5213.1 0.12 +1.2 4,947,135 - Xcc-8004.5213.1 0.12 -0.4 4,947,281 + Xcc-8004.5213.1 0.23 -2.4 4,947,440 + Xcc-8004.5213.1 0.35 +3.3 4,947,440 + Xcc-8004.5213.1 0.35 +1.2 4,947,441 - Xcc-8004.5213.1 0.35 -0.0 4,947,546 - Xcc-8004.5213.1 0.43 -2.0 4,947,546 - Xcc-8004.5213.1 0.43 +0.2 4,947,549 + Xcc-8004.5213.1 0.43 +0.3 4,947,550 - Xcc-8004.5213.1 0.43 -0.7 4,947,550 - Xcc-8004.5213.1 0.43 -0.2 4,947,573 - Xcc-8004.5213.1 0.45 -1.7 4,947,573 - Xcc-8004.5213.1 0.45 +2.6 4,947,573 - Xcc-8004.5213.1 0.45 +2.6 4,947,573 - Xcc-8004.5213.1 0.45 +0.4
Or see this region's nucleotide sequence