Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5137.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5136.1 and Xcc-8004.5137.1 overlap by 19 nucleotidesXcc-8004.5137.1 and Xcc-8004.5138.1 are separated by 129 nucleotidesXcc-8004.5138.1 and Xcc-8004.5139.1 are separated by 69 nucleotidesXcc-8004.5139.1 and Xcc-8004.5140.1 overlap by 4 nucleotides Xcc-8004.5136.1: Xcc-8004.5136.1 - secreted alkaline phosphatase, at 4,869,430 to 4,871,022 Xcc-8004.5136.1 Xcc-8004.5137.1: Xcc-8004.5137.1 - 4'-phosphopantetheinyl transferase (EC 2.7.8.-), at 4,871,004 to 4,871,618 Xcc-8004.5137.1 Xcc-8004.5138.1: Xcc-8004.5138.1 - transglycosylase associated protein, at 4,871,748 to 4,871,999 Xcc-8004.5138.1 Xcc-8004.5139.1: Xcc-8004.5139.1 - Gfa-like protein, at 4,872,069 to 4,872,503 Xcc-8004.5139.1 Xcc-8004.5140.1: Xcc-8004.5140.1 - Exodeoxyribonuclease III (EC 3.1.11.2), at 4,872,500 to 4,873,279 Xcc-8004.5140.1 Position (kb) 4871 4872Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4870.099 kb on + strand, within Xcc-8004.5136.1at 4870.100 kb on - strand, within Xcc-8004.5136.1at 4870.100 kb on - strand, within Xcc-8004.5136.1at 4870.105 kb on + strand, within Xcc-8004.5136.1at 4870.105 kb on + strand, within Xcc-8004.5136.1at 4870.105 kb on + strand, within Xcc-8004.5136.1at 4870.222 kb on + strand, within Xcc-8004.5136.1at 4870.222 kb on + strand, within Xcc-8004.5136.1at 4870.279 kb on + strand, within Xcc-8004.5136.1at 4870.279 kb on + strand, within Xcc-8004.5136.1at 4870.279 kb on + strand, within Xcc-8004.5136.1at 4870.280 kb on - strand, within Xcc-8004.5136.1at 4870.280 kb on - strand, within Xcc-8004.5136.1at 4870.324 kb on + strand, within Xcc-8004.5136.1at 4870.324 kb on + strand, within Xcc-8004.5136.1at 4870.324 kb on + strand, within Xcc-8004.5136.1at 4870.325 kb on - strand, within Xcc-8004.5136.1at 4870.339 kb on + strand, within Xcc-8004.5136.1at 4870.339 kb on + strand, within Xcc-8004.5136.1at 4870.339 kb on + strand, within Xcc-8004.5136.1at 4870.340 kb on - strand, within Xcc-8004.5136.1at 4870.340 kb on - strand, within Xcc-8004.5136.1at 4870.340 kb on - strand, within Xcc-8004.5136.1at 4870.340 kb on - strand, within Xcc-8004.5136.1at 4870.377 kb on + strand, within Xcc-8004.5136.1at 4870.377 kb on + strand, within Xcc-8004.5136.1at 4870.377 kb on + strand, within Xcc-8004.5136.1at 4870.377 kb on + strand, within Xcc-8004.5136.1at 4870.377 kb on + strand, within Xcc-8004.5136.1at 4870.377 kb on + strand, within Xcc-8004.5136.1at 4870.377 kb on + strand, within Xcc-8004.5136.1at 4870.377 kb on + strand, within Xcc-8004.5136.1at 4870.378 kb on - strand, within Xcc-8004.5136.1at 4870.378 kb on - strand, within Xcc-8004.5136.1at 4870.378 kb on - strand, within Xcc-8004.5136.1at 4870.378 kb on - strand, within Xcc-8004.5136.1at 4870.378 kb on - strand, within Xcc-8004.5136.1at 4870.378 kb on - strand, within Xcc-8004.5136.1at 4870.378 kb on - strand, within Xcc-8004.5136.1at 4870.378 kb on - strand, within Xcc-8004.5136.1at 4870.378 kb on - strand, within Xcc-8004.5136.1at 4870.378 kb on - strand, within Xcc-8004.5136.1at 4870.378 kb on - strand, within Xcc-8004.5136.1at 4870.381 kb on + strand, within Xcc-8004.5136.1at 4870.382 kb on - strand, within Xcc-8004.5136.1at 4870.668 kb on + strand, within Xcc-8004.5136.1at 4870.668 kb on + strand, within Xcc-8004.5136.1at 4870.669 kb on - strand, within Xcc-8004.5136.1at 4870.669 kb on - strand, within Xcc-8004.5136.1at 4870.669 kb on - strand, within Xcc-8004.5136.1at 4870.669 kb on - strand, within Xcc-8004.5136.1at 4870.696 kb on + strand, within Xcc-8004.5136.1at 4870.696 kb on + strand, within Xcc-8004.5136.1at 4870.696 kb on + strand, within Xcc-8004.5136.1at 4870.697 kb on - strand, within Xcc-8004.5136.1at 4870.697 kb on - strand, within Xcc-8004.5136.1at 4870.711 kb on + strand, within Xcc-8004.5136.1at 4870.711 kb on + strand, within Xcc-8004.5136.1at 4870.711 kb on + strand, within Xcc-8004.5136.1at 4870.711 kb on + strand, within Xcc-8004.5136.1at 4870.712 kb on - strand, within Xcc-8004.5136.1at 4870.712 kb on - strand, within Xcc-8004.5136.1at 4870.712 kb on - strand, within Xcc-8004.5136.1at 4870.712 kb on - strand, within Xcc-8004.5136.1at 4870.714 kb on + strand, within Xcc-8004.5136.1at 4870.714 kb on + strand, within Xcc-8004.5136.1at 4870.714 kb on + strand, within Xcc-8004.5136.1at 4870.714 kb on + strand, within Xcc-8004.5136.1at 4870.714 kb on + strand, within Xcc-8004.5136.1at 4870.714 kb on + strand, within Xcc-8004.5136.1at 4870.715 kb on - strand, within Xcc-8004.5136.1at 4870.715 kb on - strand, within Xcc-8004.5136.1at 4870.715 kb on - strand, within Xcc-8004.5136.1at 4870.715 kb on - strand, within Xcc-8004.5136.1at 4871.845 kb on + strand, within Xcc-8004.5138.1at 4871.845 kb on + strand, within Xcc-8004.5138.1at 4871.845 kb on + strand, within Xcc-8004.5138.1at 4871.845 kb on + strand, within Xcc-8004.5138.1at 4871.845 kb on + strand, within Xcc-8004.5138.1at 4871.845 kb on + strand, within Xcc-8004.5138.1at 4871.845 kb on + strand, within Xcc-8004.5138.1at 4871.845 kb on + strand, within Xcc-8004.5138.1at 4871.845 kb on + strand, within Xcc-8004.5138.1at 4871.846 kb on - strand, within Xcc-8004.5138.1at 4871.846 kb on - strand, within Xcc-8004.5138.1at 4871.846 kb on - strand, within Xcc-8004.5138.1at 4871.846 kb on - strand, within Xcc-8004.5138.1at 4871.846 kb on - strand, within Xcc-8004.5138.1at 4871.846 kb on - strand, within Xcc-8004.5138.1at 4871.846 kb on - strand, within Xcc-8004.5138.1at 4871.978 kb on + strandat 4872.139 kb on + strand, within Xcc-8004.5139.1at 4872.173 kb on - strand, within Xcc-8004.5139.1at 4872.173 kb on - strand, within Xcc-8004.5139.1at 4872.173 kb on - strand, within Xcc-8004.5139.1at 4872.178 kb on + strand, within Xcc-8004.5139.1at 4872.214 kb on + strand, within Xcc-8004.5139.1at 4872.214 kb on + strand, within Xcc-8004.5139.1at 4872.214 kb on + strand, within Xcc-8004.5139.1at 4872.214 kb on + strand, within Xcc-8004.5139.1at 4872.214 kb on + strand, within Xcc-8004.5139.1at 4872.215 kb on - strand, within Xcc-8004.5139.1at 4872.215 kb on - strand, within Xcc-8004.5139.1at 4872.215 kb on - strand, within Xcc-8004.5139.1at 4872.238 kb on + strand, within Xcc-8004.5139.1at 4872.238 kb on + strand, within Xcc-8004.5139.1at 4872.239 kb on - strand, within Xcc-8004.5139.1at 4872.239 kb on - strand, within Xcc-8004.5139.1at 4872.268 kb on + strand, within Xcc-8004.5139.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes)
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4,870,099 + Xcc-8004.5136.1 0.42 -1.2
4,870,100 - Xcc-8004.5136.1 0.42 -0.5
4,870,100 - Xcc-8004.5136.1 0.42 -1.6
4,870,105 + Xcc-8004.5136.1 0.42 +0.5
4,870,105 + Xcc-8004.5136.1 0.42 -2.2
4,870,105 + Xcc-8004.5136.1 0.42 +0.7
4,870,222 + Xcc-8004.5136.1 0.50 -0.5
4,870,222 + Xcc-8004.5136.1 0.50 +3.0
4,870,279 + Xcc-8004.5136.1 0.53 -1.7
4,870,279 + Xcc-8004.5136.1 0.53 +2.8
4,870,279 + Xcc-8004.5136.1 0.53 -1.4
4,870,280 - Xcc-8004.5136.1 0.53 -1.5
4,870,280 - Xcc-8004.5136.1 0.53 +0.7
4,870,324 + Xcc-8004.5136.1 0.56 -0.7
4,870,324 + Xcc-8004.5136.1 0.56 +3.1
4,870,324 + Xcc-8004.5136.1 0.56 -2.0
4,870,325 - Xcc-8004.5136.1 0.56 +0.1
4,870,339 + Xcc-8004.5136.1 0.57 +1.1
4,870,339 + Xcc-8004.5136.1 0.57 -0.4
4,870,339 + Xcc-8004.5136.1 0.57 +1.4
4,870,340 - Xcc-8004.5136.1 0.57 +2.2
4,870,340 - Xcc-8004.5136.1 0.57 +0.1
4,870,340 - Xcc-8004.5136.1 0.57 -1.2
4,870,340 - Xcc-8004.5136.1 0.57 -1.0
4,870,377 + Xcc-8004.5136.1 0.59 +2.2
4,870,377 + Xcc-8004.5136.1 0.59 +0.4
4,870,377 + Xcc-8004.5136.1 0.59 -0.0
4,870,377 + Xcc-8004.5136.1 0.59 -0.6
4,870,377 + Xcc-8004.5136.1 0.59 -0.1
4,870,377 + Xcc-8004.5136.1 0.59 -2.9
4,870,377 + Xcc-8004.5136.1 0.59 -2.5
4,870,377 + Xcc-8004.5136.1 0.59 -0.8
4,870,378 - Xcc-8004.5136.1 0.60 -1.2
4,870,378 - Xcc-8004.5136.1 0.60 -0.3
4,870,378 - Xcc-8004.5136.1 0.60 -0.8
4,870,378 - Xcc-8004.5136.1 0.60 -3.2
4,870,378 - Xcc-8004.5136.1 0.60 -1.3
4,870,378 - Xcc-8004.5136.1 0.60 -0.5
4,870,378 - Xcc-8004.5136.1 0.60 -2.9
4,870,378 - Xcc-8004.5136.1 0.60 -0.7
4,870,378 - Xcc-8004.5136.1 0.60 -0.1
4,870,378 - Xcc-8004.5136.1 0.60 +1.2
4,870,378 - Xcc-8004.5136.1 0.60 +2.0
4,870,381 + Xcc-8004.5136.1 0.60 -2.8
4,870,382 - Xcc-8004.5136.1 0.60 +1.5
4,870,668 + Xcc-8004.5136.1 0.78 -2.4
4,870,668 + Xcc-8004.5136.1 0.78 +0.5
4,870,669 - Xcc-8004.5136.1 0.78 -0.5
4,870,669 - Xcc-8004.5136.1 0.78 -2.3
4,870,669 - Xcc-8004.5136.1 0.78 +2.0
4,870,669 - Xcc-8004.5136.1 0.78 -0.9
4,870,696 + Xcc-8004.5136.1 0.79 -2.2
4,870,696 + Xcc-8004.5136.1 0.79 -2.4
4,870,696 + Xcc-8004.5136.1 0.79 -0.4
4,870,697 - Xcc-8004.5136.1 0.80 +2.0
4,870,697 - Xcc-8004.5136.1 0.80 -0.3
4,870,711 + Xcc-8004.5136.1 0.80 -0.6
4,870,711 + Xcc-8004.5136.1 0.80 -1.5
4,870,711 + Xcc-8004.5136.1 0.80 -2.3
4,870,711 + Xcc-8004.5136.1 0.80 -2.1
4,870,712 - Xcc-8004.5136.1 0.80 +0.2
4,870,712 - Xcc-8004.5136.1 0.80 +1.3
4,870,712 - Xcc-8004.5136.1 0.80 +0.2
4,870,712 - Xcc-8004.5136.1 0.80 +0.3
4,870,714 + Xcc-8004.5136.1 0.81 -1.4
4,870,714 + Xcc-8004.5136.1 0.81 -1.9
4,870,714 + Xcc-8004.5136.1 0.81 -0.2
4,870,714 + Xcc-8004.5136.1 0.81 +0.3
4,870,714 + Xcc-8004.5136.1 0.81 +1.3
4,870,714 + Xcc-8004.5136.1 0.81 -1.3
4,870,715 - Xcc-8004.5136.1 0.81 +0.5
4,870,715 - Xcc-8004.5136.1 0.81 +0.5
4,870,715 - Xcc-8004.5136.1 0.81 +1.3
4,870,715 - Xcc-8004.5136.1 0.81 -1.8
4,871,845 + Xcc-8004.5138.1 0.38 -2.0
4,871,845 + Xcc-8004.5138.1 0.38 +0.1
4,871,845 + Xcc-8004.5138.1 0.38 +0.6
4,871,845 + Xcc-8004.5138.1 0.38 -0.5
4,871,845 + Xcc-8004.5138.1 0.38 -2.7
4,871,845 + Xcc-8004.5138.1 0.38 +4.0
4,871,845 + Xcc-8004.5138.1 0.38 -0.7
4,871,845 + Xcc-8004.5138.1 0.38 +0.4
4,871,845 + Xcc-8004.5138.1 0.38 -0.5
4,871,846 - Xcc-8004.5138.1 0.39 -2.3
4,871,846 - Xcc-8004.5138.1 0.39 -2.1
4,871,846 - Xcc-8004.5138.1 0.39 +3.5
4,871,846 - Xcc-8004.5138.1 0.39 -1.1
4,871,846 - Xcc-8004.5138.1 0.39 -1.0
4,871,846 - Xcc-8004.5138.1 0.39 +0.9
4,871,846 - Xcc-8004.5138.1 0.39 -1.6
4,871,978 + -0.5
4,872,139 + Xcc-8004.5139.1 0.16 -1.3
4,872,173 - Xcc-8004.5139.1 0.24 +0.0
4,872,173 - Xcc-8004.5139.1 0.24 -1.0
4,872,173 - Xcc-8004.5139.1 0.24 +0.7
4,872,178 + Xcc-8004.5139.1 0.25 +0.2
4,872,214 + Xcc-8004.5139.1 0.33 +2.3
4,872,214 + Xcc-8004.5139.1 0.33 -3.3
4,872,214 + Xcc-8004.5139.1 0.33 +1.4
4,872,214 + Xcc-8004.5139.1 0.33 +0.7
4,872,214 + Xcc-8004.5139.1 0.33 +1.6
4,872,215 - Xcc-8004.5139.1 0.34 -1.0
4,872,215 - Xcc-8004.5139.1 0.34 +0.2
4,872,215 - Xcc-8004.5139.1 0.34 -0.8
4,872,238 + Xcc-8004.5139.1 0.39 +0.6
4,872,238 + Xcc-8004.5139.1 0.39 +1.1
4,872,239 - Xcc-8004.5139.1 0.39 +0.2
4,872,239 - Xcc-8004.5139.1 0.39 -0.7
4,872,268 + Xcc-8004.5139.1 0.46 -0.7

Or see this region's nucleotide sequence