Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.5075.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.5074.1 and Xcc-8004.5075.1 overlap by 1 nucleotidesXcc-8004.5075.1 and Xcc-8004.5076.1 overlap by 4 nucleotidesXcc-8004.5076.1 and Xcc-8004.5077.1 overlap by 4 nucleotides Xcc-8004.5074.1: Xcc-8004.5074.1 - 3-oxoacyl-[ACP] synthase (EC 2.3.1.41) FabV like, at 4,815,391 to 4,816,587 Xcc-8004.5074.1 Xcc-8004.5075.1: Xcc-8004.5075.1 - 3-oxoacyl-[ACP] synthase, at 4,816,587 to 4,817,360 Xcc-8004.5075.1 Xcc-8004.5076.1: Xcc-8004.5076.1 - FIG143263: Glycosyl transferase @ Dolichyl-phosphate mannose synthase related protein, at 4,817,357 to 4,818,178 Xcc-8004.5076.1 Xcc-8004.5077.1: Xcc-8004.5077.1 - FIG022199: FAD-binding protein, at 4,818,175 to 4,819,800 Xcc-8004.5077.1 Position (kb) 4816 4817 4818Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 4815.620 kb on + strand, within Xcc-8004.5074.1at 4815.620 kb on + strand, within Xcc-8004.5074.1at 4815.620 kb on + strand, within Xcc-8004.5074.1at 4815.620 kb on + strand, within Xcc-8004.5074.1at 4815.620 kb on + strand, within Xcc-8004.5074.1at 4815.620 kb on + strand, within Xcc-8004.5074.1at 4815.620 kb on + strand, within Xcc-8004.5074.1at 4815.621 kb on - strand, within Xcc-8004.5074.1at 4815.621 kb on - strand, within Xcc-8004.5074.1at 4815.621 kb on - strand, within Xcc-8004.5074.1at 4815.621 kb on - strand, within Xcc-8004.5074.1at 4815.621 kb on - strand, within Xcc-8004.5074.1at 4815.621 kb on - strand, within Xcc-8004.5074.1at 4815.736 kb on + strand, within Xcc-8004.5074.1at 4815.736 kb on + strand, within Xcc-8004.5074.1at 4815.737 kb on - strand, within Xcc-8004.5074.1at 4815.737 kb on - strand, within Xcc-8004.5074.1at 4815.737 kb on - strand, within Xcc-8004.5074.1at 4815.737 kb on - strand, within Xcc-8004.5074.1at 4815.804 kb on + strand, within Xcc-8004.5074.1at 4815.805 kb on - strand, within Xcc-8004.5074.1at 4815.966 kb on + strand, within Xcc-8004.5074.1at 4815.966 kb on + strand, within Xcc-8004.5074.1at 4815.966 kb on + strand, within Xcc-8004.5074.1at 4815.966 kb on + strand, within Xcc-8004.5074.1at 4815.967 kb on - strand, within Xcc-8004.5074.1at 4815.967 kb on - strand, within Xcc-8004.5074.1at 4815.967 kb on - strand, within Xcc-8004.5074.1at 4816.132 kb on + strand, within Xcc-8004.5074.1at 4816.132 kb on + strand, within Xcc-8004.5074.1at 4816.132 kb on + strand, within Xcc-8004.5074.1at 4816.133 kb on - strand, within Xcc-8004.5074.1at 4816.133 kb on - strand, within Xcc-8004.5074.1at 4816.138 kb on + strand, within Xcc-8004.5074.1at 4816.138 kb on + strand, within Xcc-8004.5074.1at 4816.255 kb on + strand, within Xcc-8004.5074.1at 4816.255 kb on + strand, within Xcc-8004.5074.1at 4816.255 kb on + strand, within Xcc-8004.5074.1at 4816.256 kb on - strand, within Xcc-8004.5074.1at 4816.519 kb on + strandat 4816.519 kb on + strandat 4816.520 kb on - strandat 4816.822 kb on + strand, within Xcc-8004.5075.1at 4816.822 kb on + strand, within Xcc-8004.5075.1at 4816.822 kb on + strand, within Xcc-8004.5075.1at 4816.860 kb on + strand, within Xcc-8004.5075.1at 4816.860 kb on + strand, within Xcc-8004.5075.1at 4816.860 kb on + strand, within Xcc-8004.5075.1at 4816.860 kb on + strand, within Xcc-8004.5075.1at 4816.860 kb on + strand, within Xcc-8004.5075.1at 4816.860 kb on + strand, within Xcc-8004.5075.1at 4816.860 kb on + strand, within Xcc-8004.5075.1at 4816.860 kb on + strand, within Xcc-8004.5075.1at 4816.860 kb on + strand, within Xcc-8004.5075.1at 4816.860 kb on + strand, within Xcc-8004.5075.1at 4816.861 kb on - strand, within Xcc-8004.5075.1at 4816.861 kb on - strand, within Xcc-8004.5075.1at 4816.861 kb on - strand, within Xcc-8004.5075.1at 4816.861 kb on - strand, within Xcc-8004.5075.1at 4816.861 kb on - strand, within Xcc-8004.5075.1at 4816.861 kb on - strand, within Xcc-8004.5075.1at 4816.861 kb on - strand, within Xcc-8004.5075.1at 4817.316 kb on + strandat 4817.316 kb on + strandat 4817.316 kb on + strandat 4817.456 kb on + strand, within Xcc-8004.5076.1at 4817.456 kb on + strand, within Xcc-8004.5076.1at 4817.456 kb on + strand, within Xcc-8004.5076.1at 4817.456 kb on + strand, within Xcc-8004.5076.1at 4817.456 kb on + strand, within Xcc-8004.5076.1at 4817.456 kb on + strand, within Xcc-8004.5076.1at 4817.456 kb on + strand, within Xcc-8004.5076.1at 4817.456 kb on + strand, within Xcc-8004.5076.1at 4817.456 kb on + strand, within Xcc-8004.5076.1at 4817.456 kb on + strand, within Xcc-8004.5076.1at 4817.457 kb on - strand, within Xcc-8004.5076.1at 4817.457 kb on - strand, within Xcc-8004.5076.1at 4817.457 kb on - strand, within Xcc-8004.5076.1at 4817.457 kb on - strand, within Xcc-8004.5076.1at 4817.457 kb on - strand, within Xcc-8004.5076.1at 4817.457 kb on - strand, within Xcc-8004.5076.1at 4817.838 kb on - strand, within Xcc-8004.5076.1at 4818.084 kb on - strand, within Xcc-8004.5076.1at 4818.139 kb on + strandat 4818.139 kb on + strandat 4818.139 kb on + strandat 4818.355 kb on + strand, within Xcc-8004.5077.1at 4818.355 kb on + strand, within Xcc-8004.5077.1at 4818.356 kb on - strand, within Xcc-8004.5077.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes)
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4,815,620 + Xcc-8004.5074.1 0.19 -1.3
4,815,620 + Xcc-8004.5074.1 0.19 -0.4
4,815,620 + Xcc-8004.5074.1 0.19 +0.9
4,815,620 + Xcc-8004.5074.1 0.19 -0.0
4,815,620 + Xcc-8004.5074.1 0.19 +1.2
4,815,620 + Xcc-8004.5074.1 0.19 -1.8
4,815,620 + Xcc-8004.5074.1 0.19 -2.2
4,815,621 - Xcc-8004.5074.1 0.19 -3.6
4,815,621 - Xcc-8004.5074.1 0.19 +1.5
4,815,621 - Xcc-8004.5074.1 0.19 -1.2
4,815,621 - Xcc-8004.5074.1 0.19 -1.0
4,815,621 - Xcc-8004.5074.1 0.19 +0.4
4,815,621 - Xcc-8004.5074.1 0.19 -0.8
4,815,736 + Xcc-8004.5074.1 0.29 +1.0
4,815,736 + Xcc-8004.5074.1 0.29 +0.7
4,815,737 - Xcc-8004.5074.1 0.29 -0.3
4,815,737 - Xcc-8004.5074.1 0.29 -1.2
4,815,737 - Xcc-8004.5074.1 0.29 -0.2
4,815,737 - Xcc-8004.5074.1 0.29 -0.3
4,815,804 + Xcc-8004.5074.1 0.35 +1.0
4,815,805 - Xcc-8004.5074.1 0.35 +0.2
4,815,966 + Xcc-8004.5074.1 0.48 +0.9
4,815,966 + Xcc-8004.5074.1 0.48 -1.4
4,815,966 + Xcc-8004.5074.1 0.48 -1.0
4,815,966 + Xcc-8004.5074.1 0.48 -0.9
4,815,967 - Xcc-8004.5074.1 0.48 -1.0
4,815,967 - Xcc-8004.5074.1 0.48 -0.0
4,815,967 - Xcc-8004.5074.1 0.48 -0.5
4,816,132 + Xcc-8004.5074.1 0.62 -1.6
4,816,132 + Xcc-8004.5074.1 0.62 -0.1
4,816,132 + Xcc-8004.5074.1 0.62 +0.7
4,816,133 - Xcc-8004.5074.1 0.62 +0.9
4,816,133 - Xcc-8004.5074.1 0.62 -2.8
4,816,138 + Xcc-8004.5074.1 0.62 -0.8
4,816,138 + Xcc-8004.5074.1 0.62 -0.5
4,816,255 + Xcc-8004.5074.1 0.72 -0.0
4,816,255 + Xcc-8004.5074.1 0.72 +0.6
4,816,255 + Xcc-8004.5074.1 0.72 -2.3
4,816,256 - Xcc-8004.5074.1 0.72 -1.6
4,816,519 + -1.6
4,816,519 + -1.0
4,816,520 - +2.2
4,816,822 + Xcc-8004.5075.1 0.30 -0.9
4,816,822 + Xcc-8004.5075.1 0.30 -0.9
4,816,822 + Xcc-8004.5075.1 0.30 -2.4
4,816,860 + Xcc-8004.5075.1 0.35 -1.3
4,816,860 + Xcc-8004.5075.1 0.35 -1.6
4,816,860 + Xcc-8004.5075.1 0.35 +0.5
4,816,860 + Xcc-8004.5075.1 0.35 -1.4
4,816,860 + Xcc-8004.5075.1 0.35 +0.4
4,816,860 + Xcc-8004.5075.1 0.35 +1.6
4,816,860 + Xcc-8004.5075.1 0.35 +5.0
4,816,860 + Xcc-8004.5075.1 0.35 +1.4
4,816,860 + Xcc-8004.5075.1 0.35 -0.3
4,816,860 + Xcc-8004.5075.1 0.35 -0.4
4,816,861 - Xcc-8004.5075.1 0.35 +0.4
4,816,861 - Xcc-8004.5075.1 0.35 +0.2
4,816,861 - Xcc-8004.5075.1 0.35 -0.1
4,816,861 - Xcc-8004.5075.1 0.35 -1.2
4,816,861 - Xcc-8004.5075.1 0.35 +1.2
4,816,861 - Xcc-8004.5075.1 0.35 -1.2
4,816,861 - Xcc-8004.5075.1 0.35 +0.2
4,817,316 + -1.7
4,817,316 + +1.7
4,817,316 + -2.9
4,817,456 + Xcc-8004.5076.1 0.12 -0.7
4,817,456 + Xcc-8004.5076.1 0.12 -1.6
4,817,456 + Xcc-8004.5076.1 0.12 -2.5
4,817,456 + Xcc-8004.5076.1 0.12 +2.3
4,817,456 + Xcc-8004.5076.1 0.12 -1.1
4,817,456 + Xcc-8004.5076.1 0.12 -2.7
4,817,456 + Xcc-8004.5076.1 0.12 +0.7
4,817,456 + Xcc-8004.5076.1 0.12 +0.4
4,817,456 + Xcc-8004.5076.1 0.12 -0.9
4,817,456 + Xcc-8004.5076.1 0.12 -0.2
4,817,457 - Xcc-8004.5076.1 0.12 +0.8
4,817,457 - Xcc-8004.5076.1 0.12 -0.0
4,817,457 - Xcc-8004.5076.1 0.12 +1.5
4,817,457 - Xcc-8004.5076.1 0.12 +2.1
4,817,457 - Xcc-8004.5076.1 0.12 -0.0
4,817,457 - Xcc-8004.5076.1 0.12 -0.1
4,817,838 - Xcc-8004.5076.1 0.59 -1.4
4,818,084 - Xcc-8004.5076.1 0.88 +0.8
4,818,139 + -0.2
4,818,139 + -0.8
4,818,139 + +1.0
4,818,355 + Xcc-8004.5077.1 0.11 +1.1
4,818,355 + Xcc-8004.5077.1 0.11 -2.9
4,818,356 - Xcc-8004.5077.1 0.11 -1.4

Or see this region's nucleotide sequence