Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4910.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntXcc-8004.4909.1 and Xcc-8004.4910.1 are separated by 100 nucleotidesXcc-8004.4910.1 and Xcc-8004.4911.1 are separated by 114 nucleotides Xcc-8004.4909.1: Xcc-8004.4909.1 - Biosynthetic arginine decarboxylase (EC 4.1.1.19), at 4,670,114 to 4,672,141 Xcc-8004.4909.1 Xcc-8004.4910.1: Xcc-8004.4910.1 - Spermidine synthase (EC 2.5.1.16), at 4,672,242 to 4,673,099 Xcc-8004.4910.1 Xcc-8004.4911.1: Xcc-8004.4911.1 - FIG01210100: hypothetical protein, at 4,673,214 to 4,673,996 Xcc-8004.4911.1 Position (kb) 4672 4673 4674Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6at 4672.064 kb on - strandat 4672.064 kb on - strandat 4673.097 kb on + strandat 4673.097 kb on + strandat 4673.124 kb on + strandat 4673.124 kb on + strandat 4673.125 kb on - strandat 4673.281 kb on + strandat 4673.284 kb on + strandat 4673.285 kb on - strandat 4673.285 kb on - strandat 4673.285 kb on - strandat 4673.285 kb on - strandat 4673.285 kb on - strandat 4673.285 kb on - strandat 4673.285 kb on - strandat 4673.287 kb on + strandat 4673.287 kb on + strandat 4673.287 kb on + strandat 4673.287 kb on + strandat 4673.288 kb on - strandat 4673.288 kb on - strandat 4673.288 kb on - strandat 4673.299 kb on + strand, within Xcc-8004.4911.1at 4673.299 kb on + strand, within Xcc-8004.4911.1at 4673.299 kb on + strand, within Xcc-8004.4911.1at 4673.299 kb on + strand, within Xcc-8004.4911.1at 4673.300 kb on - strand, within Xcc-8004.4911.1at 4673.305 kb on + strand, within Xcc-8004.4911.1at 4673.305 kb on + strand, within Xcc-8004.4911.1at 4673.305 kb on + strand, within Xcc-8004.4911.1at 4673.305 kb on + strand, within Xcc-8004.4911.1at 4673.305 kb on + strand, within Xcc-8004.4911.1at 4673.305 kb on + strand, within Xcc-8004.4911.1at 4673.305 kb on + strand, within Xcc-8004.4911.1at 4673.305 kb on + strand, within Xcc-8004.4911.1at 4673.305 kb on + strand, within Xcc-8004.4911.1at 4673.305 kb on + strand, within Xcc-8004.4911.1at 4673.305 kb on + strand, within Xcc-8004.4911.1at 4673.305 kb on + strand, within Xcc-8004.4911.1at 4673.305 kb on + strand, within Xcc-8004.4911.1at 4673.306 kb on - strand, within Xcc-8004.4911.1at 4673.306 kb on - strand, within Xcc-8004.4911.1at 4673.306 kb on - strand, within Xcc-8004.4911.1at 4673.306 kb on - strand, within Xcc-8004.4911.1at 4673.306 kb on - strand, within Xcc-8004.4911.1at 4673.306 kb on - strand, within Xcc-8004.4911.1at 4673.306 kb on - strand, within Xcc-8004.4911.1at 4673.306 kb on - strand, within Xcc-8004.4911.1at 4673.306 kb on - strand, within Xcc-8004.4911.1at 4673.306 kb on - strand, within Xcc-8004.4911.1at 4673.306 kb on - strand, within Xcc-8004.4911.1at 4673.306 kb on - strand, within Xcc-8004.4911.1at 4673.306 kb on - strand, within Xcc-8004.4911.1at 4673.306 kb on - strand, within Xcc-8004.4911.1at 4673.312 kb on + strand, within Xcc-8004.4911.1at 4673.312 kb on + strand, within Xcc-8004.4911.1at 4673.313 kb on - strand, within Xcc-8004.4911.1at 4673.313 kb on - strand, within Xcc-8004.4911.1at 4673.313 kb on - strand, within Xcc-8004.4911.1at 4673.313 kb on - strand, within Xcc-8004.4911.1at 4673.315 kb on - strand, within Xcc-8004.4911.1at 4673.315 kb on - strand, within Xcc-8004.4911.1at 4673.315 kb on - strand, within Xcc-8004.4911.1at 4673.315 kb on - strand, within Xcc-8004.4911.1at 4673.315 kb on - strand, within Xcc-8004.4911.1at 4673.371 kb on + strand, within Xcc-8004.4911.1at 4673.372 kb on - strand, within Xcc-8004.4911.1at 4673.372 kb on - strand, within Xcc-8004.4911.1at 4673.423 kb on - strand, within Xcc-8004.4911.1at 4673.504 kb on + strand, within Xcc-8004.4911.1at 4673.505 kb on - strand, within Xcc-8004.4911.1at 4673.512 kb on + strand, within Xcc-8004.4911.1at 4673.512 kb on + strand, within Xcc-8004.4911.1at 4673.512 kb on + strand, within Xcc-8004.4911.1at 4673.512 kb on + strand, within Xcc-8004.4911.1at 4673.512 kb on + strand, within Xcc-8004.4911.1at 4673.512 kb on + strand, within Xcc-8004.4911.1at 4673.513 kb on - strand, within Xcc-8004.4911.1at 4673.513 kb on - strand, within Xcc-8004.4911.1at 4673.513 kb on - strand, within Xcc-8004.4911.1at 4673.513 kb on - strand, within Xcc-8004.4911.1at 4673.513 kb on - strand, within Xcc-8004.4911.1at 4673.513 kb on - strand, within Xcc-8004.4911.1at 4673.513 kb on - strand, within Xcc-8004.4911.1at 4673.513 kb on - strand, within Xcc-8004.4911.1at 4673.515 kb on + strand, within Xcc-8004.4911.1at 4673.515 kb on + strand, within Xcc-8004.4911.1at 4673.515 kb on + strand, within Xcc-8004.4911.1at 4673.515 kb on + strand, within Xcc-8004.4911.1at 4673.515 kb on + strand, within Xcc-8004.4911.1at 4673.515 kb on + strand, within Xcc-8004.4911.1at 4673.515 kb on + strand, within Xcc-8004.4911.1at 4673.516 kb on - strand, within Xcc-8004.4911.1at 4673.641 kb on + strand, within Xcc-8004.4911.1at 4673.642 kb on - strand, within Xcc-8004.4911.1at 4673.642 kb on - strand, within Xcc-8004.4911.1at 4673.642 kb on - strand, within Xcc-8004.4911.1at 4673.672 kb on + strand, within Xcc-8004.4911.1at 4673.672 kb on + strand, within Xcc-8004.4911.1at 4673.725 kb on + strand, within Xcc-8004.4911.1at 4673.725 kb on + strand, within Xcc-8004.4911.1at 4673.725 kb on + strand, within Xcc-8004.4911.1at 4673.725 kb on + strand, within Xcc-8004.4911.1at 4673.725 kb on + strand, within Xcc-8004.4911.1at 4673.725 kb on + strand, within Xcc-8004.4911.1at 4673.725 kb on + strand, within Xcc-8004.4911.1at 4673.726 kb on - strand, within Xcc-8004.4911.1at 4673.726 kb on - strand, within Xcc-8004.4911.1at 4673.726 kb on - strand, within Xcc-8004.4911.1at 4673.726 kb on - strand, within Xcc-8004.4911.1at 4673.726 kb on - strand, within Xcc-8004.4911.1at 4673.726 kb on - strand, within Xcc-8004.4911.1at 4673.726 kb on - strand, within Xcc-8004.4911.1at 4673.726 kb on - strand, within Xcc-8004.4911.1at 4673.774 kb on + strand, within Xcc-8004.4911.1at 4673.810 kb on + strand, within Xcc-8004.4911.1at 4673.810 kb on + strand, within Xcc-8004.4911.1at 4673.811 kb on - strand, within Xcc-8004.4911.1at 4673.811 kb on - strand, within Xcc-8004.4911.1at 4673.811 kb on - strand, within Xcc-8004.4911.1at 4673.843 kb on + strand, within Xcc-8004.4911.1at 4673.843 kb on + strand, within Xcc-8004.4911.1at 4673.843 kb on + strand, within Xcc-8004.4911.1at 4673.843 kb on + strand, within Xcc-8004.4911.1at 4673.843 kb on + strand, within Xcc-8004.4911.1at 4673.843 kb on + strand, within Xcc-8004.4911.1at 4673.844 kb on - strand, within Xcc-8004.4911.1at 4673.844 kb on - strand, within Xcc-8004.4911.1at 4673.844 kb on - strand, within Xcc-8004.4911.1at 4673.844 kb on - strand, within Xcc-8004.4911.1at 4673.844 kb on - strand, within Xcc-8004.4911.1at 4673.844 kb on - strand, within Xcc-8004.4911.1at 4673.844 kb on - strand, within Xcc-8004.4911.1at 4673.903 kb on - strand, within Xcc-8004.4911.1at 4674.090 kb on + strandat 4674.090 kb on + strandat 4674.090 kb on + strandat 4674.091 kb on - strandat 4674.091 kb on - strandat 4674.091 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes)
remove
4,672,064 - -1.9
4,672,064 - -2.0
4,673,097 + -1.9
4,673,097 + -0.8
4,673,124 + +0.4
4,673,124 + +1.2
4,673,125 - -3.4
4,673,281 + -1.2
4,673,284 + -0.3
4,673,285 - -0.4
4,673,285 - -3.0
4,673,285 - -2.1
4,673,285 - -0.5
4,673,285 - -0.0
4,673,285 - +1.7
4,673,285 - -0.3
4,673,287 + -0.5
4,673,287 + -1.4
4,673,287 + -0.9
4,673,287 + -1.7
4,673,288 - -1.4
4,673,288 - -0.9
4,673,288 - +2.3
4,673,299 + Xcc-8004.4911.1 0.11 +0.4
4,673,299 + Xcc-8004.4911.1 0.11 +0.3
4,673,299 + Xcc-8004.4911.1 0.11 +2.6
4,673,299 + Xcc-8004.4911.1 0.11 -3.4
4,673,300 - Xcc-8004.4911.1 0.11 +1.6
4,673,305 + Xcc-8004.4911.1 0.12 -1.4
4,673,305 + Xcc-8004.4911.1 0.12 -0.5
4,673,305 + Xcc-8004.4911.1 0.12 +0.3
4,673,305 + Xcc-8004.4911.1 0.12 +1.8
4,673,305 + Xcc-8004.4911.1 0.12 +0.5
4,673,305 + Xcc-8004.4911.1 0.12 +0.2
4,673,305 + Xcc-8004.4911.1 0.12 +1.7
4,673,305 + Xcc-8004.4911.1 0.12 -0.4
4,673,305 + Xcc-8004.4911.1 0.12 -1.2
4,673,305 + Xcc-8004.4911.1 0.12 -0.5
4,673,305 + Xcc-8004.4911.1 0.12 +1.4
4,673,305 + Xcc-8004.4911.1 0.12 +0.9
4,673,305 + Xcc-8004.4911.1 0.12 -2.6
4,673,306 - Xcc-8004.4911.1 0.12 -0.8
4,673,306 - Xcc-8004.4911.1 0.12 +2.6
4,673,306 - Xcc-8004.4911.1 0.12 +2.8
4,673,306 - Xcc-8004.4911.1 0.12 -2.2
4,673,306 - Xcc-8004.4911.1 0.12 +5.8
4,673,306 - Xcc-8004.4911.1 0.12 -3.1
4,673,306 - Xcc-8004.4911.1 0.12 -1.6
4,673,306 - Xcc-8004.4911.1 0.12 -3.2
4,673,306 - Xcc-8004.4911.1 0.12 +0.7
4,673,306 - Xcc-8004.4911.1 0.12 +0.1
4,673,306 - Xcc-8004.4911.1 0.12 +1.0
4,673,306 - Xcc-8004.4911.1 0.12 +0.6
4,673,306 - Xcc-8004.4911.1 0.12 +1.8
4,673,306 - Xcc-8004.4911.1 0.12 +0.5
4,673,312 + Xcc-8004.4911.1 0.13 +2.0
4,673,312 + Xcc-8004.4911.1 0.13 +1.3
4,673,313 - Xcc-8004.4911.1 0.13 -2.0
4,673,313 - Xcc-8004.4911.1 0.13 +0.6
4,673,313 - Xcc-8004.4911.1 0.13 +3.3
4,673,313 - Xcc-8004.4911.1 0.13 +1.8
4,673,315 - Xcc-8004.4911.1 0.13 -1.6
4,673,315 - Xcc-8004.4911.1 0.13 +1.9
4,673,315 - Xcc-8004.4911.1 0.13 -0.7
4,673,315 - Xcc-8004.4911.1 0.13 -0.1
4,673,315 - Xcc-8004.4911.1 0.13 -0.7
4,673,371 + Xcc-8004.4911.1 0.20 -2.0
4,673,372 - Xcc-8004.4911.1 0.20 -1.2
4,673,372 - Xcc-8004.4911.1 0.20 +3.4
4,673,423 - Xcc-8004.4911.1 0.27 +0.3
4,673,504 + Xcc-8004.4911.1 0.37 +3.0
4,673,505 - Xcc-8004.4911.1 0.37 +1.9
4,673,512 + Xcc-8004.4911.1 0.38 -2.0
4,673,512 + Xcc-8004.4911.1 0.38 +0.4
4,673,512 + Xcc-8004.4911.1 0.38 -1.8
4,673,512 + Xcc-8004.4911.1 0.38 +0.8
4,673,512 + Xcc-8004.4911.1 0.38 -0.0
4,673,512 + Xcc-8004.4911.1 0.38 -0.5
4,673,513 - Xcc-8004.4911.1 0.38 -0.8
4,673,513 - Xcc-8004.4911.1 0.38 +0.9
4,673,513 - Xcc-8004.4911.1 0.38 +1.8
4,673,513 - Xcc-8004.4911.1 0.38 -0.3
4,673,513 - Xcc-8004.4911.1 0.38 -1.3
4,673,513 - Xcc-8004.4911.1 0.38 +0.1
4,673,513 - Xcc-8004.4911.1 0.38 -1.0
4,673,513 - Xcc-8004.4911.1 0.38 +2.7
4,673,515 + Xcc-8004.4911.1 0.38 +3.3
4,673,515 + Xcc-8004.4911.1 0.38 -0.6
4,673,515 + Xcc-8004.4911.1 0.38 -0.4
4,673,515 + Xcc-8004.4911.1 0.38 -2.3
4,673,515 + Xcc-8004.4911.1 0.38 -0.5
4,673,515 + Xcc-8004.4911.1 0.38 -1.2
4,673,515 + Xcc-8004.4911.1 0.38 +1.9
4,673,516 - Xcc-8004.4911.1 0.39 -2.5
4,673,641 + Xcc-8004.4911.1 0.55 +0.7
4,673,642 - Xcc-8004.4911.1 0.55 -1.5
4,673,642 - Xcc-8004.4911.1 0.55 -0.5
4,673,642 - Xcc-8004.4911.1 0.55 -1.6
4,673,672 + Xcc-8004.4911.1 0.58 +0.0
4,673,672 + Xcc-8004.4911.1 0.58 -0.2
4,673,725 + Xcc-8004.4911.1 0.65 +0.7
4,673,725 + Xcc-8004.4911.1 0.65 +1.0
4,673,725 + Xcc-8004.4911.1 0.65 +5.0
4,673,725 + Xcc-8004.4911.1 0.65 +2.3
4,673,725 + Xcc-8004.4911.1 0.65 +0.3
4,673,725 + Xcc-8004.4911.1 0.65 -0.6
4,673,725 + Xcc-8004.4911.1 0.65 -0.9
4,673,726 - Xcc-8004.4911.1 0.65 -0.9
4,673,726 - Xcc-8004.4911.1 0.65 +0.7
4,673,726 - Xcc-8004.4911.1 0.65 +0.6
4,673,726 - Xcc-8004.4911.1 0.65 -0.7
4,673,726 - Xcc-8004.4911.1 0.65 -0.5
4,673,726 - Xcc-8004.4911.1 0.65 +1.3
4,673,726 - Xcc-8004.4911.1 0.65 +2.9
4,673,726 - Xcc-8004.4911.1 0.65 -2.6
4,673,774 + Xcc-8004.4911.1 0.72 +0.8
4,673,810 + Xcc-8004.4911.1 0.76 -1.9
4,673,810 + Xcc-8004.4911.1 0.76 -3.7
4,673,811 - Xcc-8004.4911.1 0.76 -0.0
4,673,811 - Xcc-8004.4911.1 0.76 -1.1
4,673,811 - Xcc-8004.4911.1 0.76 -0.5
4,673,843 + Xcc-8004.4911.1 0.80 +0.1
4,673,843 + Xcc-8004.4911.1 0.80 +1.3
4,673,843 + Xcc-8004.4911.1 0.80 +1.9
4,673,843 + Xcc-8004.4911.1 0.80 +0.2
4,673,843 + Xcc-8004.4911.1 0.80 +1.3
4,673,843 + Xcc-8004.4911.1 0.80 +1.4
4,673,844 - Xcc-8004.4911.1 0.80 -1.9
4,673,844 - Xcc-8004.4911.1 0.80 +2.3
4,673,844 - Xcc-8004.4911.1 0.80 -1.3
4,673,844 - Xcc-8004.4911.1 0.80 +1.0
4,673,844 - Xcc-8004.4911.1 0.80 +0.0
4,673,844 - Xcc-8004.4911.1 0.80 -2.5
4,673,844 - Xcc-8004.4911.1 0.80 +0.0
4,673,903 - Xcc-8004.4911.1 0.88 +1.5
4,674,090 + -0.8
4,674,090 + -2.5
4,674,090 + -0.0
4,674,091 - +1.4
4,674,091 - -0.8
4,674,091 - +1.7

Or see this region's nucleotide sequence