Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4842.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4840.1 and Xcc-8004.4841.1 are separated by 60 nucleotidesXcc-8004.4841.1 and Xcc-8004.4842.1 are separated by 96 nucleotidesXcc-8004.4842.1 and Xcc-8004.4843.1 are separated by 36 nucleotidesXcc-8004.4843.1 and Xcc-8004.4844.1 overlap by 4 nucleotidesXcc-8004.4844.1 and Xcc-8004.4845.1 overlap by 20 nucleotides Xcc-8004.4840.1: Xcc-8004.4840.1 - Cytochrome oxidase biogenesis protein Surf1, facilitates heme A insertion, at 4,604,660 to 4,605,385 Xcc-8004.4840.1 Xcc-8004.4841.1: Xcc-8004.4841.1 - FIG01212439: hypothetical protein, at 4,605,446 to 4,605,664 Xcc-8004.4841.1 Xcc-8004.4842.1: Xcc-8004.4842.1 - Cytochrome c oxidase polypeptide III (EC 1.9.3.1), at 4,605,761 to 4,606,636 Xcc-8004.4842.1 Xcc-8004.4843.1: Xcc-8004.4843.1 - Cytochrome oxidase biogenesis protein Cox11-CtaG, copper delivery to Cox1, at 4,606,673 to 4,607,269 Xcc-8004.4843.1 Xcc-8004.4844.1: Xcc-8004.4844.1 - FIG01210764: hypothetical protein, at 4,607,266 to 4,607,439 Xcc-8004.4844.1 Xcc-8004.4845.1: Xcc-8004.4845.1 - Cytochrome c oxidase polypeptide I (EC 1.9.3.1), at 4,607,420 to 4,609,024 Xcc-8004.4845.1 Position (kb) 4605 4606 4607Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 4604.792 kb on + strand, within Xcc-8004.4840.1at 4604.793 kb on - strand, within Xcc-8004.4840.1at 4604.811 kb on + strand, within Xcc-8004.4840.1at 4604.811 kb on + strand, within Xcc-8004.4840.1at 4604.811 kb on + strand, within Xcc-8004.4840.1at 4604.811 kb on + strand, within Xcc-8004.4840.1at 4604.811 kb on + strand, within Xcc-8004.4840.1at 4604.811 kb on + strand, within Xcc-8004.4840.1at 4604.811 kb on + strand, within Xcc-8004.4840.1at 4604.812 kb on - strand, within Xcc-8004.4840.1at 4604.812 kb on - strand, within Xcc-8004.4840.1at 4605.170 kb on + strand, within Xcc-8004.4840.1at 4605.170 kb on + strand, within Xcc-8004.4840.1at 4605.171 kb on - strand, within Xcc-8004.4840.1at 4605.498 kb on + strand, within Xcc-8004.4841.1at 4605.499 kb on - strand, within Xcc-8004.4841.1at 4605.499 kb on - strand, within Xcc-8004.4841.1at 4605.499 kb on - strand, within Xcc-8004.4841.1at 4605.499 kb on - strand, within Xcc-8004.4841.1at 4605.499 kb on - strand, within Xcc-8004.4841.1at 4605.499 kb on - strand, within Xcc-8004.4841.1at 4605.499 kb on - strand, within Xcc-8004.4841.1at 4605.521 kb on + strand, within Xcc-8004.4841.1at 4605.521 kb on + strand, within Xcc-8004.4841.1at 4605.525 kb on - strand, within Xcc-8004.4841.1at 4605.626 kb on + strand, within Xcc-8004.4841.1at 4605.626 kb on + strand, within Xcc-8004.4841.1at 4605.626 kb on + strand, within Xcc-8004.4841.1at 4605.626 kb on + strand, within Xcc-8004.4841.1at 4605.626 kb on + strand, within Xcc-8004.4841.1at 4605.626 kb on + strand, within Xcc-8004.4841.1at 4605.627 kb on - strand, within Xcc-8004.4841.1at 4605.627 kb on - strand, within Xcc-8004.4841.1at 4605.627 kb on - strand, within Xcc-8004.4841.1at 4605.749 kb on + strandat 4605.749 kb on + strandat 4605.750 kb on - strandat 4605.771 kb on + strandat 4605.771 kb on + strandat 4605.771 kb on + strandat 4605.771 kb on + strandat 4605.771 kb on + strandat 4605.771 kb on + strandat 4605.771 kb on + strandat 4605.771 kb on + strandat 4605.771 kb on + strandat 4605.771 kb on + strandat 4605.772 kb on - strandat 4605.772 kb on - strandat 4605.772 kb on - strandat 4605.772 kb on - strandat 4605.772 kb on - strandat 4605.772 kb on - strandat 4605.819 kb on + strandat 4605.820 kb on - strandat 4605.963 kb on + strand, within Xcc-8004.4842.1at 4605.963 kb on + strand, within Xcc-8004.4842.1at 4605.963 kb on + strand, within Xcc-8004.4842.1at 4605.963 kb on + strand, within Xcc-8004.4842.1at 4605.963 kb on + strand, within Xcc-8004.4842.1at 4605.964 kb on - strand, within Xcc-8004.4842.1at 4605.964 kb on - strand, within Xcc-8004.4842.1at 4605.964 kb on - strand, within Xcc-8004.4842.1at 4605.964 kb on - strand, within Xcc-8004.4842.1at 4605.964 kb on - strand, within Xcc-8004.4842.1at 4605.964 kb on - strand, within Xcc-8004.4842.1at 4606.011 kb on + strand, within Xcc-8004.4842.1at 4606.011 kb on + strand, within Xcc-8004.4842.1at 4606.011 kb on + strand, within Xcc-8004.4842.1at 4606.011 kb on + strand, within Xcc-8004.4842.1at 4606.012 kb on - strand, within Xcc-8004.4842.1at 4606.012 kb on - strand, within Xcc-8004.4842.1at 4606.012 kb on - strand, within Xcc-8004.4842.1at 4606.012 kb on - strand, within Xcc-8004.4842.1at 4606.012 kb on - strand, within Xcc-8004.4842.1at 4606.239 kb on + strand, within Xcc-8004.4842.1at 4606.318 kb on - strand, within Xcc-8004.4842.1at 4606.413 kb on + strand, within Xcc-8004.4842.1at 4606.413 kb on + strand, within Xcc-8004.4842.1at 4606.414 kb on - strand, within Xcc-8004.4842.1at 4606.605 kb on + strandat 4606.605 kb on + strandat 4606.605 kb on + strandat 4606.606 kb on - strandat 4606.606 kb on - strandat 4606.657 kb on - strandat 4606.674 kb on + strandat 4606.744 kb on - strand, within Xcc-8004.4843.1at 4606.744 kb on - strand, within Xcc-8004.4843.1at 4606.753 kb on - strand, within Xcc-8004.4843.1at 4606.753 kb on - strand, within Xcc-8004.4843.1at 4606.762 kb on + strand, within Xcc-8004.4843.1at 4606.762 kb on + strand, within Xcc-8004.4843.1at 4606.762 kb on + strand, within Xcc-8004.4843.1at 4606.763 kb on - strand, within Xcc-8004.4843.1at 4606.763 kb on - strand, within Xcc-8004.4843.1at 4606.852 kb on + strand, within Xcc-8004.4843.1at 4606.881 kb on + strand, within Xcc-8004.4843.1at 4606.882 kb on - strand, within Xcc-8004.4843.1at 4606.925 kb on + strand, within Xcc-8004.4843.1at 4606.925 kb on + strand, within Xcc-8004.4843.1at 4606.925 kb on + strand, within Xcc-8004.4843.1at 4606.928 kb on + strand, within Xcc-8004.4843.1at 4606.928 kb on + strand, within Xcc-8004.4843.1at 4606.928 kb on + strand, within Xcc-8004.4843.1at 4606.928 kb on + strand, within Xcc-8004.4843.1at 4606.929 kb on - strand, within Xcc-8004.4843.1at 4606.929 kb on - strand, within Xcc-8004.4843.1at 4606.959 kb on + strand, within Xcc-8004.4843.1at 4606.960 kb on - strand, within Xcc-8004.4843.1at 4606.960 kb on - strand, within Xcc-8004.4843.1at 4606.960 kb on - strand, within Xcc-8004.4843.1at 4606.960 kb on - strand, within Xcc-8004.4843.1at 4607.239 kb on + strandat 4607.239 kb on + strandat 4607.240 kb on - strandat 4607.252 kb on - strandat 4607.264 kb on - strandat 4607.304 kb on - strand, within Xcc-8004.4844.1at 4607.482 kb on + strandat 4607.482 kb on + strandat 4607.482 kb on + strandat 4607.483 kb on - strandat 4607.563 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes)
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4,604,792 + Xcc-8004.4840.1 0.18 +0.0
4,604,793 - Xcc-8004.4840.1 0.18 +0.3
4,604,811 + Xcc-8004.4840.1 0.21 +0.1
4,604,811 + Xcc-8004.4840.1 0.21 +1.8
4,604,811 + Xcc-8004.4840.1 0.21 -0.2
4,604,811 + Xcc-8004.4840.1 0.21 -1.6
4,604,811 + Xcc-8004.4840.1 0.21 +1.1
4,604,811 + Xcc-8004.4840.1 0.21 +1.0
4,604,811 + Xcc-8004.4840.1 0.21 +0.6
4,604,812 - Xcc-8004.4840.1 0.21 +2.9
4,604,812 - Xcc-8004.4840.1 0.21 +0.5
4,605,170 + Xcc-8004.4840.1 0.70 +0.3
4,605,170 + Xcc-8004.4840.1 0.70 -2.4
4,605,171 - Xcc-8004.4840.1 0.70 -2.6
4,605,498 + Xcc-8004.4841.1 0.24 +0.2
4,605,499 - Xcc-8004.4841.1 0.24 -0.9
4,605,499 - Xcc-8004.4841.1 0.24 +0.0
4,605,499 - Xcc-8004.4841.1 0.24 -1.4
4,605,499 - Xcc-8004.4841.1 0.24 +1.7
4,605,499 - Xcc-8004.4841.1 0.24 +2.6
4,605,499 - Xcc-8004.4841.1 0.24 +0.4
4,605,499 - Xcc-8004.4841.1 0.24 -0.6
4,605,521 + Xcc-8004.4841.1 0.34 -0.8
4,605,521 + Xcc-8004.4841.1 0.34 +1.2
4,605,525 - Xcc-8004.4841.1 0.36 -0.4
4,605,626 + Xcc-8004.4841.1 0.82 -2.3
4,605,626 + Xcc-8004.4841.1 0.82 -2.6
4,605,626 + Xcc-8004.4841.1 0.82 -0.2
4,605,626 + Xcc-8004.4841.1 0.82 +0.3
4,605,626 + Xcc-8004.4841.1 0.82 +0.6
4,605,626 + Xcc-8004.4841.1 0.82 +2.2
4,605,627 - Xcc-8004.4841.1 0.83 -0.0
4,605,627 - Xcc-8004.4841.1 0.83 +1.8
4,605,627 - Xcc-8004.4841.1 0.83 +1.7
4,605,749 + +3.2
4,605,749 + +0.4
4,605,750 - +1.5
4,605,771 + -2.1
4,605,771 + -1.5
4,605,771 + +4.9
4,605,771 + +0.2
4,605,771 + -2.2
4,605,771 + -3.9
4,605,771 + +0.6
4,605,771 + +4.5
4,605,771 + -2.9
4,605,771 + +0.4
4,605,772 - -0.5
4,605,772 - +1.8
4,605,772 - -1.0
4,605,772 - +0.0
4,605,772 - +2.3
4,605,772 - -0.2
4,605,819 + +1.8
4,605,820 - +0.8
4,605,963 + Xcc-8004.4842.1 0.23 +1.9
4,605,963 + Xcc-8004.4842.1 0.23 -0.7
4,605,963 + Xcc-8004.4842.1 0.23 -1.6
4,605,963 + Xcc-8004.4842.1 0.23 -2.5
4,605,963 + Xcc-8004.4842.1 0.23 +2.3
4,605,964 - Xcc-8004.4842.1 0.23 +1.0
4,605,964 - Xcc-8004.4842.1 0.23 +1.5
4,605,964 - Xcc-8004.4842.1 0.23 -0.6
4,605,964 - Xcc-8004.4842.1 0.23 +0.6
4,605,964 - Xcc-8004.4842.1 0.23 +0.9
4,605,964 - Xcc-8004.4842.1 0.23 +0.9
4,606,011 + Xcc-8004.4842.1 0.29 -0.8
4,606,011 + Xcc-8004.4842.1 0.29 -0.3
4,606,011 + Xcc-8004.4842.1 0.29 -0.5
4,606,011 + Xcc-8004.4842.1 0.29 -2.2
4,606,012 - Xcc-8004.4842.1 0.29 -2.5
4,606,012 - Xcc-8004.4842.1 0.29 -1.0
4,606,012 - Xcc-8004.4842.1 0.29 -0.8
4,606,012 - Xcc-8004.4842.1 0.29 +0.9
4,606,012 - Xcc-8004.4842.1 0.29 -0.9
4,606,239 + Xcc-8004.4842.1 0.55 +0.7
4,606,318 - Xcc-8004.4842.1 0.64 -1.2
4,606,413 + Xcc-8004.4842.1 0.74 +0.1
4,606,413 + Xcc-8004.4842.1 0.74 -3.8
4,606,414 - Xcc-8004.4842.1 0.75 -0.9
4,606,605 + +0.8
4,606,605 + -2.5
4,606,605 + +0.1
4,606,606 - +2.9
4,606,606 - +1.4
4,606,657 - +1.2
4,606,674 + +1.2
4,606,744 - Xcc-8004.4843.1 0.12 -2.9
4,606,744 - Xcc-8004.4843.1 0.12 -1.4
4,606,753 - Xcc-8004.4843.1 0.13 -1.4
4,606,753 - Xcc-8004.4843.1 0.13 +2.6
4,606,762 + Xcc-8004.4843.1 0.15 -0.0
4,606,762 + Xcc-8004.4843.1 0.15 +0.2
4,606,762 + Xcc-8004.4843.1 0.15 -2.9
4,606,763 - Xcc-8004.4843.1 0.15 +0.5
4,606,763 - Xcc-8004.4843.1 0.15 +1.3
4,606,852 + Xcc-8004.4843.1 0.30 -0.5
4,606,881 + Xcc-8004.4843.1 0.35 -0.2
4,606,882 - Xcc-8004.4843.1 0.35 +1.7
4,606,925 + Xcc-8004.4843.1 0.42 +3.6
4,606,925 + Xcc-8004.4843.1 0.42 +3.3
4,606,925 + Xcc-8004.4843.1 0.42 +0.7
4,606,928 + Xcc-8004.4843.1 0.43 +1.5
4,606,928 + Xcc-8004.4843.1 0.43 +1.6
4,606,928 + Xcc-8004.4843.1 0.43 -1.2
4,606,928 + Xcc-8004.4843.1 0.43 +0.7
4,606,929 - Xcc-8004.4843.1 0.43 +1.5
4,606,929 - Xcc-8004.4843.1 0.43 +0.7
4,606,959 + Xcc-8004.4843.1 0.48 -0.3
4,606,960 - Xcc-8004.4843.1 0.48 +1.0
4,606,960 - Xcc-8004.4843.1 0.48 +0.1
4,606,960 - Xcc-8004.4843.1 0.48 -0.0
4,606,960 - Xcc-8004.4843.1 0.48 +4.3
4,607,239 + -1.9
4,607,239 + +0.5
4,607,240 - -0.6
4,607,252 - +1.9
4,607,264 - -1.1
4,607,304 - Xcc-8004.4844.1 0.22 -1.2
4,607,482 + -1.3
4,607,482 + -0.1
4,607,482 + -1.5
4,607,483 - +1.8
4,607,563 + -2.5

Or see this region's nucleotide sequence