Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.4615.1

Experiment: Xylemvessel barcodes Location 3 6 dpi (25 plantes)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.4614.1 and Xcc-8004.4615.1 are separated by 88 nucleotidesXcc-8004.4615.1 and Xcc-8004.4616.1 are separated by 139 nucleotides Xcc-8004.4614.1: Xcc-8004.4614.1 - L-sorbosone dehydrogenase, at 4,399,275 to 4,400,609 Xcc-8004.4614.1 Xcc-8004.4615.1: Xcc-8004.4615.1 - FIG01210966: hypothetical protein, at 4,400,698 to 4,401,003 Xcc-8004.4615.1 Xcc-8004.4616.1: Xcc-8004.4616.1 - Sensor histidine kinase, at 4,401,143 to 4,403,251 Xcc-8004.4616.1 Position (kb) 4400 4401 4402Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 4399.721 kb on - strand, within Xcc-8004.4614.1at 4399.721 kb on - strand, within Xcc-8004.4614.1at 4399.939 kb on + strand, within Xcc-8004.4614.1at 4399.939 kb on + strand, within Xcc-8004.4614.1at 4399.939 kb on + strand, within Xcc-8004.4614.1at 4399.939 kb on + strand, within Xcc-8004.4614.1at 4399.939 kb on + strand, within Xcc-8004.4614.1at 4399.939 kb on + strand, within Xcc-8004.4614.1at 4399.939 kb on + strand, within Xcc-8004.4614.1at 4399.939 kb on + strand, within Xcc-8004.4614.1at 4399.939 kb on + strand, within Xcc-8004.4614.1at 4399.939 kb on + strand, within Xcc-8004.4614.1at 4399.939 kb on + strand, within Xcc-8004.4614.1at 4399.939 kb on + strand, within Xcc-8004.4614.1at 4399.939 kb on + strand, within Xcc-8004.4614.1at 4399.939 kb on + strand, within Xcc-8004.4614.1at 4399.939 kb on + strand, within Xcc-8004.4614.1at 4399.939 kb on + strand, within Xcc-8004.4614.1at 4399.939 kb on + strand, within Xcc-8004.4614.1at 4399.939 kb on + strand, within Xcc-8004.4614.1at 4399.939 kb on + strand, within Xcc-8004.4614.1at 4399.939 kb on + strand, within Xcc-8004.4614.1at 4399.939 kb on + strand, within Xcc-8004.4614.1at 4399.940 kb on - strand, within Xcc-8004.4614.1at 4399.940 kb on - strand, within Xcc-8004.4614.1at 4399.940 kb on - strand, within Xcc-8004.4614.1at 4399.940 kb on - strand, within Xcc-8004.4614.1at 4399.940 kb on - strand, within Xcc-8004.4614.1at 4399.940 kb on - strand, within Xcc-8004.4614.1at 4399.940 kb on - strand, within Xcc-8004.4614.1at 4399.940 kb on - strand, within Xcc-8004.4614.1at 4399.940 kb on - strand, within Xcc-8004.4614.1at 4399.940 kb on - strand, within Xcc-8004.4614.1at 4399.940 kb on - strand, within Xcc-8004.4614.1at 4399.940 kb on - strand, within Xcc-8004.4614.1at 4399.940 kb on - strand, within Xcc-8004.4614.1at 4399.940 kb on - strand, within Xcc-8004.4614.1at 4399.940 kb on - strand, within Xcc-8004.4614.1at 4399.940 kb on - strand, within Xcc-8004.4614.1at 4399.940 kb on - strand, within Xcc-8004.4614.1at 4399.940 kb on - strand, within Xcc-8004.4614.1at 4399.940 kb on - strand, within Xcc-8004.4614.1at 4399.940 kb on - strand, within Xcc-8004.4614.1at 4400.092 kb on + strand, within Xcc-8004.4614.1at 4400.093 kb on - strand, within Xcc-8004.4614.1at 4400.093 kb on - strand, within Xcc-8004.4614.1at 4400.093 kb on - strand, within Xcc-8004.4614.1at 4400.093 kb on - strand, within Xcc-8004.4614.1at 4400.093 kb on - strand, within Xcc-8004.4614.1at 4400.093 kb on - strand, within Xcc-8004.4614.1at 4400.344 kb on + strand, within Xcc-8004.4614.1at 4400.344 kb on + strand, within Xcc-8004.4614.1at 4400.344 kb on + strand, within Xcc-8004.4614.1at 4400.344 kb on + strand, within Xcc-8004.4614.1at 4400.344 kb on + strand, within Xcc-8004.4614.1at 4400.344 kb on + strand, within Xcc-8004.4614.1at 4400.344 kb on + strand, within Xcc-8004.4614.1at 4400.344 kb on + strand, within Xcc-8004.4614.1at 4400.344 kb on + strand, within Xcc-8004.4614.1at 4400.344 kb on + strand, within Xcc-8004.4614.1at 4400.344 kb on + strand, within Xcc-8004.4614.1at 4400.344 kb on + strand, within Xcc-8004.4614.1at 4400.344 kb on + strand, within Xcc-8004.4614.1at 4400.344 kb on + strand, within Xcc-8004.4614.1at 4400.344 kb on + strand, within Xcc-8004.4614.1at 4400.344 kb on + strand, within Xcc-8004.4614.1at 4400.344 kb on + strand, within Xcc-8004.4614.1at 4400.344 kb on + strand, within Xcc-8004.4614.1at 4400.344 kb on + strand, within Xcc-8004.4614.1at 4400.344 kb on + strand, within Xcc-8004.4614.1at 4400.344 kb on + strand, within Xcc-8004.4614.1at 4400.344 kb on + strand, within Xcc-8004.4614.1at 4400.344 kb on + strand, within Xcc-8004.4614.1at 4400.344 kb on + strand, within Xcc-8004.4614.1at 4400.344 kb on + strand, within Xcc-8004.4614.1at 4400.344 kb on + strand, within Xcc-8004.4614.1at 4400.344 kb on + strand, within Xcc-8004.4614.1at 4400.344 kb on + strand, within Xcc-8004.4614.1at 4400.344 kb on + strand, within Xcc-8004.4614.1at 4400.344 kb on + strand, within Xcc-8004.4614.1at 4400.344 kb on + strand, within Xcc-8004.4614.1at 4400.344 kb on + strand, within Xcc-8004.4614.1at 4400.344 kb on + strand, within Xcc-8004.4614.1at 4400.345 kb on - strand, within Xcc-8004.4614.1at 4400.345 kb on - strand, within Xcc-8004.4614.1at 4400.345 kb on - strand, within Xcc-8004.4614.1at 4400.345 kb on - strand, within Xcc-8004.4614.1at 4400.345 kb on - strand, within Xcc-8004.4614.1at 4400.345 kb on - strand, within Xcc-8004.4614.1at 4400.345 kb on - strand, within Xcc-8004.4614.1at 4400.345 kb on - strand, within Xcc-8004.4614.1at 4400.345 kb on - strand, within Xcc-8004.4614.1at 4400.345 kb on - strand, within Xcc-8004.4614.1at 4400.345 kb on - strand, within Xcc-8004.4614.1at 4400.345 kb on - strand, within Xcc-8004.4614.1at 4400.345 kb on - strand, within Xcc-8004.4614.1at 4400.345 kb on - strand, within Xcc-8004.4614.1at 4400.345 kb on - strand, within Xcc-8004.4614.1at 4400.345 kb on - strand, within Xcc-8004.4614.1at 4400.345 kb on - strand, within Xcc-8004.4614.1at 4400.345 kb on - strand, within Xcc-8004.4614.1at 4400.345 kb on - strand, within Xcc-8004.4614.1at 4400.345 kb on - strand, within Xcc-8004.4614.1at 4400.345 kb on - strand, within Xcc-8004.4614.1at 4400.345 kb on - strand, within Xcc-8004.4614.1at 4400.345 kb on - strand, within Xcc-8004.4614.1at 4400.345 kb on - strand, within Xcc-8004.4614.1at 4400.345 kb on - strand, within Xcc-8004.4614.1at 4400.345 kb on - strand, within Xcc-8004.4614.1at 4400.674 kb on + strandat 4400.674 kb on + strandat 4400.674 kb on + strandat 4400.674 kb on + strandat 4400.674 kb on + strandat 4400.674 kb on + strandat 4400.674 kb on + strandat 4400.674 kb on + strandat 4400.674 kb on + strandat 4400.674 kb on + strandat 4400.675 kb on - strandat 4400.675 kb on - strandat 4400.675 kb on - strandat 4400.675 kb on - strandat 4400.675 kb on - strandat 4400.675 kb on - strandat 4400.675 kb on - strandat 4400.675 kb on - strandat 4400.675 kb on - strandat 4400.675 kb on - strandat 4400.675 kb on - strandat 4400.843 kb on + strand, within Xcc-8004.4615.1at 4400.843 kb on + strand, within Xcc-8004.4615.1at 4400.843 kb on + strand, within Xcc-8004.4615.1at 4400.843 kb on + strand, within Xcc-8004.4615.1at 4400.844 kb on - strand, within Xcc-8004.4615.1at 4400.844 kb on - strand, within Xcc-8004.4615.1at 4400.844 kb on - strand, within Xcc-8004.4615.1at 4400.976 kb on + strandat 4400.978 kb on + strandat 4400.978 kb on + strandat 4400.978 kb on + strandat 4400.978 kb on + strandat 4400.978 kb on + strandat 4400.978 kb on + strandat 4400.978 kb on + strandat 4400.979 kb on - strandat 4400.979 kb on - strandat 4400.979 kb on - strandat 4400.979 kb on - strandat 4400.979 kb on - strandat 4400.979 kb on - strandat 4400.993 kb on + strandat 4400.993 kb on + strandat 4400.993 kb on + strandat 4400.993 kb on + strandat 4400.993 kb on + strandat 4400.993 kb on + strandat 4400.993 kb on + strandat 4400.994 kb on - strandat 4400.994 kb on - strandat 4400.994 kb on - strandat 4400.994 kb on - strandat 4400.994 kb on - strandat 4401.036 kb on - strandat 4401.198 kb on + strandat 4401.198 kb on + strandat 4401.198 kb on + strandat 4401.199 kb on - strandat 4401.199 kb on - strandat 4401.199 kb on - strandat 4401.393 kb on + strand, within Xcc-8004.4616.1at 4401.394 kb on - strand, within Xcc-8004.4616.1at 4401.394 kb on - strand, within Xcc-8004.4616.1at 4401.483 kb on + strand, within Xcc-8004.4616.1at 4401.484 kb on - strand, within Xcc-8004.4616.1at 4401.484 kb on - strand, within Xcc-8004.4616.1at 4401.484 kb on - strand, within Xcc-8004.4616.1

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Per-strain Table

Position Strand Gene LocusTag Fraction Xylemvessel barcodes Location 3 6 dpi (25 plantes)
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4,399,721 - Xcc-8004.4614.1 0.33 +0.8
4,399,721 - Xcc-8004.4614.1 0.33 +0.1
4,399,939 + Xcc-8004.4614.1 0.50 +0.6
4,399,939 + Xcc-8004.4614.1 0.50 +0.5
4,399,939 + Xcc-8004.4614.1 0.50 -0.4
4,399,939 + Xcc-8004.4614.1 0.50 -1.6
4,399,939 + Xcc-8004.4614.1 0.50 +0.1
4,399,939 + Xcc-8004.4614.1 0.50 -0.4
4,399,939 + Xcc-8004.4614.1 0.50 -1.1
4,399,939 + Xcc-8004.4614.1 0.50 +1.3
4,399,939 + Xcc-8004.4614.1 0.50 -0.4
4,399,939 + Xcc-8004.4614.1 0.50 -1.0
4,399,939 + Xcc-8004.4614.1 0.50 +2.9
4,399,939 + Xcc-8004.4614.1 0.50 +0.1
4,399,939 + Xcc-8004.4614.1 0.50 +3.4
4,399,939 + Xcc-8004.4614.1 0.50 +0.8
4,399,939 + Xcc-8004.4614.1 0.50 +1.3
4,399,939 + Xcc-8004.4614.1 0.50 -0.9
4,399,939 + Xcc-8004.4614.1 0.50 -0.4
4,399,939 + Xcc-8004.4614.1 0.50 +0.9
4,399,939 + Xcc-8004.4614.1 0.50 +0.6
4,399,939 + Xcc-8004.4614.1 0.50 +0.2
4,399,939 + Xcc-8004.4614.1 0.50 -0.4
4,399,940 - Xcc-8004.4614.1 0.50 -2.0
4,399,940 - Xcc-8004.4614.1 0.50 +1.5
4,399,940 - Xcc-8004.4614.1 0.50 +2.2
4,399,940 - Xcc-8004.4614.1 0.50 +1.4
4,399,940 - Xcc-8004.4614.1 0.50 -1.1
4,399,940 - Xcc-8004.4614.1 0.50 -0.4
4,399,940 - Xcc-8004.4614.1 0.50 +1.7
4,399,940 - Xcc-8004.4614.1 0.50 +3.3
4,399,940 - Xcc-8004.4614.1 0.50 -0.3
4,399,940 - Xcc-8004.4614.1 0.50 -0.6
4,399,940 - Xcc-8004.4614.1 0.50 -0.8
4,399,940 - Xcc-8004.4614.1 0.50 -0.7
4,399,940 - Xcc-8004.4614.1 0.50 -0.6
4,399,940 - Xcc-8004.4614.1 0.50 -3.0
4,399,940 - Xcc-8004.4614.1 0.50 +0.1
4,399,940 - Xcc-8004.4614.1 0.50 +2.7
4,399,940 - Xcc-8004.4614.1 0.50 +0.2
4,399,940 - Xcc-8004.4614.1 0.50 +0.1
4,399,940 - Xcc-8004.4614.1 0.50 +2.7
4,399,940 - Xcc-8004.4614.1 0.50 +1.2
4,400,092 + Xcc-8004.4614.1 0.61 +0.4
4,400,093 - Xcc-8004.4614.1 0.61 -0.5
4,400,093 - Xcc-8004.4614.1 0.61 +0.7
4,400,093 - Xcc-8004.4614.1 0.61 +0.8
4,400,093 - Xcc-8004.4614.1 0.61 +0.6
4,400,093 - Xcc-8004.4614.1 0.61 +0.6
4,400,093 - Xcc-8004.4614.1 0.61 -0.7
4,400,344 + Xcc-8004.4614.1 0.80 -1.1
4,400,344 + Xcc-8004.4614.1 0.80 -0.8
4,400,344 + Xcc-8004.4614.1 0.80 -0.6
4,400,344 + Xcc-8004.4614.1 0.80 -1.8
4,400,344 + Xcc-8004.4614.1 0.80 +3.6
4,400,344 + Xcc-8004.4614.1 0.80 +5.3
4,400,344 + Xcc-8004.4614.1 0.80 -2.1
4,400,344 + Xcc-8004.4614.1 0.80 -1.4
4,400,344 + Xcc-8004.4614.1 0.80 -1.3
4,400,344 + Xcc-8004.4614.1 0.80 -1.3
4,400,344 + Xcc-8004.4614.1 0.80 +2.6
4,400,344 + Xcc-8004.4614.1 0.80 -0.3
4,400,344 + Xcc-8004.4614.1 0.80 -0.1
4,400,344 + Xcc-8004.4614.1 0.80 +1.8
4,400,344 + Xcc-8004.4614.1 0.80 +0.6
4,400,344 + Xcc-8004.4614.1 0.80 -2.4
4,400,344 + Xcc-8004.4614.1 0.80 -2.4
4,400,344 + Xcc-8004.4614.1 0.80 +0.6
4,400,344 + Xcc-8004.4614.1 0.80 -1.7
4,400,344 + Xcc-8004.4614.1 0.80 +0.4
4,400,344 + Xcc-8004.4614.1 0.80 +0.7
4,400,344 + Xcc-8004.4614.1 0.80 +1.7
4,400,344 + Xcc-8004.4614.1 0.80 +1.0
4,400,344 + Xcc-8004.4614.1 0.80 +0.4
4,400,344 + Xcc-8004.4614.1 0.80 -2.6
4,400,344 + Xcc-8004.4614.1 0.80 -2.1
4,400,344 + Xcc-8004.4614.1 0.80 -1.6
4,400,344 + Xcc-8004.4614.1 0.80 +3.3
4,400,344 + Xcc-8004.4614.1 0.80 +1.2
4,400,344 + Xcc-8004.4614.1 0.80 +2.8
4,400,344 + Xcc-8004.4614.1 0.80 -2.8
4,400,344 + Xcc-8004.4614.1 0.80 -1.1
4,400,344 + Xcc-8004.4614.1 0.80 +0.3
4,400,345 - Xcc-8004.4614.1 0.80 +1.6
4,400,345 - Xcc-8004.4614.1 0.80 +1.0
4,400,345 - Xcc-8004.4614.1 0.80 -1.7
4,400,345 - Xcc-8004.4614.1 0.80 +1.0
4,400,345 - Xcc-8004.4614.1 0.80 -0.9
4,400,345 - Xcc-8004.4614.1 0.80 +1.7
4,400,345 - Xcc-8004.4614.1 0.80 -1.4
4,400,345 - Xcc-8004.4614.1 0.80 -2.5
4,400,345 - Xcc-8004.4614.1 0.80 +1.8
4,400,345 - Xcc-8004.4614.1 0.80 +0.7
4,400,345 - Xcc-8004.4614.1 0.80 -3.3
4,400,345 - Xcc-8004.4614.1 0.80 -1.7
4,400,345 - Xcc-8004.4614.1 0.80 +1.3
4,400,345 - Xcc-8004.4614.1 0.80 -1.0
4,400,345 - Xcc-8004.4614.1 0.80 +0.6
4,400,345 - Xcc-8004.4614.1 0.80 +1.4
4,400,345 - Xcc-8004.4614.1 0.80 +0.6
4,400,345 - Xcc-8004.4614.1 0.80 -1.3
4,400,345 - Xcc-8004.4614.1 0.80 +1.1
4,400,345 - Xcc-8004.4614.1 0.80 +2.4
4,400,345 - Xcc-8004.4614.1 0.80 -0.8
4,400,345 - Xcc-8004.4614.1 0.80 -0.1
4,400,345 - Xcc-8004.4614.1 0.80 +1.2
4,400,345 - Xcc-8004.4614.1 0.80 -2.5
4,400,345 - Xcc-8004.4614.1 0.80 -1.2
4,400,345 - Xcc-8004.4614.1 0.80 +1.6
4,400,674 + +2.4
4,400,674 + +0.3
4,400,674 + -0.0
4,400,674 + -2.3
4,400,674 + -0.3
4,400,674 + +3.5
4,400,674 + +0.1
4,400,674 + +1.2
4,400,674 + -4.4
4,400,674 + -0.6
4,400,675 - +0.3
4,400,675 - +0.2
4,400,675 - +2.0
4,400,675 - +1.9
4,400,675 - +2.5
4,400,675 - -0.9
4,400,675 - -1.2
4,400,675 - +2.1
4,400,675 - -2.3
4,400,675 - -0.8
4,400,675 - -2.1
4,400,843 + Xcc-8004.4615.1 0.47 +1.2
4,400,843 + Xcc-8004.4615.1 0.47 +0.6
4,400,843 + Xcc-8004.4615.1 0.47 +1.5
4,400,843 + Xcc-8004.4615.1 0.47 +1.2
4,400,844 - Xcc-8004.4615.1 0.48 +1.4
4,400,844 - Xcc-8004.4615.1 0.48 +2.4
4,400,844 - Xcc-8004.4615.1 0.48 -0.2
4,400,976 + -0.7
4,400,978 + +2.0
4,400,978 + +0.2
4,400,978 + +1.2
4,400,978 + +0.2
4,400,978 + -1.5
4,400,978 + -0.5
4,400,978 + +0.8
4,400,979 - -1.5
4,400,979 - +0.8
4,400,979 - -0.4
4,400,979 - +0.9
4,400,979 - -1.9
4,400,979 - +0.3
4,400,993 + -2.5
4,400,993 + -0.3
4,400,993 + +0.8
4,400,993 + +0.9
4,400,993 + -2.4
4,400,993 + -1.8
4,400,993 + -2.8
4,400,994 - -0.2
4,400,994 - -1.6
4,400,994 - -1.4
4,400,994 - -0.6
4,400,994 - +0.8
4,401,036 - -0.9
4,401,198 + +0.2
4,401,198 + -2.3
4,401,198 + -0.4
4,401,199 - -2.4
4,401,199 - -2.0
4,401,199 - +0.7
4,401,393 + Xcc-8004.4616.1 0.12 +0.1
4,401,394 - Xcc-8004.4616.1 0.12 +0.4
4,401,394 - Xcc-8004.4616.1 0.12 +3.7
4,401,483 + Xcc-8004.4616.1 0.16 -0.6
4,401,484 - Xcc-8004.4616.1 0.16 +1.2
4,401,484 - Xcc-8004.4616.1 0.16 -0.8
4,401,484 - Xcc-8004.4616.1 0.16 +1.5

Or see this region's nucleotide sequence